Wall clock time and date at job start Mon Mar 30 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46831 * 2 1 4 4 C 1.46501 * 120.00361 * 270.04725 * 3 2 1 5 5 C 1.50698 * 109.46983 * 89.99886 * 4 3 2 6 6 H 1.07999 * 120.00381 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99691 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00133 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47122 * 60.00406 * 9 7 5 11 11 H 1.48499 * 109.46997 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47584 * 299.99922 * 9 7 5 13 13 C 1.34779 * 119.99905 * 90.04886 * 3 2 1 14 14 O 1.21609 * 120.00212 * 184.21061 * 13 3 2 15 15 C 1.47400 * 120.00010 * 4.20502 * 13 3 2 16 16 C 1.38241 * 126.45229 * 327.13092 * 15 13 3 17 17 N 1.34244 * 108.41165 * 179.97438 * 16 15 13 18 18 H 0.96996 * 125.39332 * 179.97438 * 17 16 15 19 19 C 1.37828 * 109.20829 * 0.02562 * 17 16 15 20 20 C 1.46630 * 125.86136 * 179.97438 * 19 17 16 21 21 O 1.21602 * 120.00266 * 179.97438 * 20 19 17 22 22 O 1.34874 * 119.99595 * 359.97438 * 20 19 17 23 23 C 1.36452 * 108.28199 * 359.76218 * 19 17 16 24 24 H 1.08994 * 109.47888 * 59.99783 * 1 2 3 25 25 H 1.09007 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47336 * 299.99554 * 1 2 3 27 27 H 1.08994 * 109.47366 * 120.00160 * 2 1 3 28 28 H 1.08997 * 109.46747 * 240.00853 * 2 1 3 29 29 H 1.09003 * 109.47313 * 210.00375 * 4 3 2 30 30 H 1.09005 * 109.47014 * 329.99851 * 4 3 2 31 31 H 0.96994 * 119.99834 * 180.02562 * 8 7 5 32 32 H 1.07994 * 125.79574 * 359.97438 * 16 15 13 33 33 H 0.96700 * 117.00233 * 180.02562 * 22 20 19 34 34 H 1.07998 * 126.49836 * 180.23132 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2614 2.0723 -1.2687 5 6 1.0052 2.7827 -1.7025 6 1 0.1149 2.7256 -1.0939 7 6 0.9926 3.5057 -2.8765 8 7 2.0769 3.5757 -3.6175 9 14 -0.5648 4.3858 -3.4147 10 1 -0.9568 5.3758 -2.3795 11 1 -0.3182 5.0863 -4.7006 12 1 -1.6571 3.3955 -3.5914 13 6 2.2438 2.0163 1.1672 14 8 2.5754 3.1863 1.1688 15 6 2.0884 1.2926 2.4419 16 6 1.1843 0.2810 2.7073 17 7 1.3558 -0.1185 3.9773 18 1 0.8487 -0.8170 4.4199 19 6 2.3658 0.6217 4.5532 20 6 2.8523 0.4865 5.9298 21 8 3.7540 1.1982 6.3287 22 8 2.2996 -0.4273 6.7536 23 6 2.8386 1.4988 3.6209 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8932 -0.5137 -0.8901 29 1 3.0635 2.7989 -1.1388 30 1 2.5490 1.3459 -2.0288 31 1 2.0681 4.0846 -4.4431 32 1 0.4626 -0.1198 2.0110 33 1 2.6533 -0.4792 7.6520 34 1 3.6341 2.2160 3.7589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383949735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:22 Heat of formation + Delta-G solvation = -69.419629 kcal Electronic energy + Delta-G solvation = -19949.924709 eV Core-core repulsion = 16656.263241 eV Total energy + Delta-G solvation = -3293.661468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67703 -39.87090 -38.45563 -36.31611 -35.33938 -32.82057 -31.33668 -30.52190 -29.57401 -27.19156 -24.41832 -23.29642 -22.80015 -21.47331 -20.36115 -19.52272 -17.95060 -17.64842 -16.48521 -16.39811 -15.98175 -15.44513 -15.07206 -14.53221 -14.03325 -13.86831 -13.81371 -13.53247 -13.11625 -12.74555 -12.24924 -12.16437 -11.86858 -11.81065 -11.55408 -11.18545 -11.00925 -10.95070 -10.74600 -10.50207 -10.04308 -9.57233 -9.16115 -8.97294 -8.43158 -8.35644 -7.63038 -6.00301 -4.04187 1.08190 2.10693 2.64587 2.92674 2.99510 3.33539 3.38877 3.41995 3.92516 4.04734 4.48446 4.84762 4.94985 5.05952 5.30018 5.33880 5.37146 5.66350 5.68199 5.80828 5.91650 6.01312 6.17467 6.21156 6.45277 6.64135 6.71944 7.10604 7.15402 7.48894 7.60300 7.64509 7.96452 8.27794 8.47299 8.95099 9.17237 9.60371 11.07890 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.004426 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.827214 B = 6325.419770 C = 6601.548737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.101 3.899 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.574 3.426 14 O -0.535 6.535 15 C -0.215 4.215 16 C 0.059 3.941 17 N -0.521 5.521 18 H 0.425 0.575 19 C -0.064 4.064 20 C 0.556 3.444 21 O -0.506 6.506 22 O -0.524 6.524 23 C -0.036 4.036 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.202 0.798 33 H 0.416 0.584 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -13.621 15.295 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.361 3.639 14 O -0.412 6.412 15 C -0.224 4.224 16 C -0.081 4.081 17 N -0.116 5.116 18 H 0.263 0.737 19 C -0.172 4.172 20 C 0.401 3.599 21 O -0.394 6.394 22 O -0.336 6.336 23 C -0.062 4.062 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.275 0.725 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.834 -12.794 14.934 19.868 hybrid contribution -0.973 0.100 0.393 1.054 sum -3.807 -12.694 15.327 20.262 Atomic orbital electron populations 1.22477 0.96823 1.01137 1.03773 1.21614 0.94060 0.84372 1.02247 1.48121 1.63788 1.12981 1.07504 1.19303 0.97563 0.92454 0.77841 1.21407 0.97513 1.31120 1.06018 0.92321 1.24931 0.96401 0.96281 0.96509 1.69920 1.27506 1.41685 1.14381 0.86595 0.83267 0.79937 0.77819 1.20206 1.21262 1.20337 1.17277 0.78308 0.85981 0.82327 1.90774 1.48063 1.15500 1.86901 1.20053 1.03024 1.02650 0.96704 1.23724 1.01530 0.97124 0.85757 1.41746 1.28530 1.30314 1.11035 0.73711 1.18785 1.01343 1.05010 0.92065 1.19507 0.79286 0.76843 0.84262 1.90973 1.29000 1.43782 1.75662 1.84554 1.63576 1.56985 1.28534 1.21146 0.98874 0.96488 0.89686 0.89743 0.92431 0.92588 0.91303 0.90508 0.93884 0.94939 0.92722 0.78173 0.72501 0.82340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.03 37.16 0.34 -2.13 16 2 C 0.10 1.53 5.68 -4.04 -0.02 1.51 16 3 N -0.59 -12.35 2.46 -176.34 -0.43 -12.79 16 4 C 0.25 6.37 5.17 -5.19 -0.03 6.35 16 5 C -0.52 -14.46 8.92 -34.44 -0.31 -14.77 16 6 H 0.06 1.61 7.42 -52.49 -0.39 1.22 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.57 12.40 7.60 -12.53 -0.10 12.30 16 14 O -0.53 -14.13 16.68 5.27 0.09 -14.04 16 15 C -0.21 -3.55 5.52 -105.02 -0.58 -4.13 16 16 C 0.06 0.71 9.19 -16.50 -0.15 0.55 16 17 N -0.52 -5.11 6.01 -9.32 -0.06 -5.17 16 18 H 0.42 2.61 8.96 -40.82 -0.37 2.25 16 19 C -0.06 -0.81 7.02 -82.43 -0.58 -1.39 16 20 C 0.56 6.53 8.31 34.12 0.28 6.81 16 21 O -0.51 -7.53 17.65 -19.34 -0.34 -7.87 16 22 O -0.52 -3.95 13.44 -40.97 -0.55 -4.50 16 23 C -0.04 -0.56 10.51 -39.08 -0.41 -0.97 16 24 H 0.08 1.41 7.26 -51.93 -0.38 1.04 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.71 6.02 -51.93 -0.31 0.40 16 27 H 0.07 0.85 5.24 -51.93 -0.27 0.58 16 28 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 29 H 0.04 1.26 7.48 -51.93 -0.39 0.88 16 30 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.20 1.96 3.53 -52.49 -0.19 1.78 16 33 H 0.42 1.30 9.11 45.56 0.42 1.71 16 34 H 0.16 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -36.38 298.13 -5.41 -41.79 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.68 Total: 1.39 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.65 Total: 5.76 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.25 Total: -43.69 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.80 Total: -26.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.38 -5.41 -41.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383949735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.628 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds