Wall clock time and date at job start Mon Mar 30 2020 04:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46831 * 2 1 4 4 C 1.46501 * 120.00361 * 270.04725 * 3 2 1 5 5 C 1.50698 * 109.46983 * 89.99886 * 4 3 2 6 6 H 1.07999 * 120.00381 * 0.02562 * 5 4 3 7 7 C 1.37883 * 119.99691 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00133 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47122 * 60.00406 * 9 7 5 11 11 H 1.48499 * 109.46997 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47584 * 299.99922 * 9 7 5 13 13 C 1.34779 * 119.99905 * 90.04886 * 3 2 1 14 14 O 1.21609 * 120.00212 * 184.21061 * 13 3 2 15 15 C 1.47400 * 120.00010 * 4.20502 * 13 3 2 16 16 C 1.38241 * 126.45229 * 327.13092 * 15 13 3 17 17 N 1.34244 * 108.41165 * 179.97438 * 16 15 13 18 18 H 0.96996 * 125.39332 * 179.97438 * 17 16 15 19 19 C 1.37828 * 109.20829 * 0.02562 * 17 16 15 20 20 C 1.46630 * 125.86136 * 179.97438 * 19 17 16 21 21 O 1.21602 * 120.00266 * 179.97438 * 20 19 17 22 22 O 1.34874 * 119.99595 * 359.97438 * 20 19 17 23 23 C 1.36452 * 108.28199 * 359.76218 * 19 17 16 24 24 H 1.08994 * 109.47888 * 59.99783 * 1 2 3 25 25 H 1.09007 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47336 * 299.99554 * 1 2 3 27 27 H 1.08994 * 109.47366 * 120.00160 * 2 1 3 28 28 H 1.08997 * 109.46747 * 240.00853 * 2 1 3 29 29 H 1.09003 * 109.47313 * 210.00375 * 4 3 2 30 30 H 1.09005 * 109.47014 * 329.99851 * 4 3 2 31 31 H 0.96994 * 119.99834 * 180.02562 * 8 7 5 32 32 H 1.07994 * 125.79574 * 359.97438 * 16 15 13 33 33 H 0.96700 * 117.00233 * 180.02562 * 22 20 19 34 34 H 1.07998 * 126.49836 * 180.23132 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2614 2.0723 -1.2687 5 6 1.0052 2.7827 -1.7025 6 1 0.1149 2.7256 -1.0939 7 6 0.9926 3.5057 -2.8765 8 7 2.0769 3.5757 -3.6175 9 14 -0.5648 4.3858 -3.4147 10 1 -0.9568 5.3758 -2.3795 11 1 -0.3182 5.0863 -4.7006 12 1 -1.6571 3.3955 -3.5914 13 6 2.2438 2.0163 1.1672 14 8 2.5754 3.1863 1.1688 15 6 2.0884 1.2926 2.4419 16 6 1.1843 0.2810 2.7073 17 7 1.3558 -0.1185 3.9773 18 1 0.8487 -0.8170 4.4199 19 6 2.3658 0.6217 4.5532 20 6 2.8523 0.4865 5.9298 21 8 3.7540 1.1982 6.3287 22 8 2.2996 -0.4273 6.7536 23 6 2.8386 1.4988 3.6209 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8932 -0.5137 -0.8901 29 1 3.0635 2.7989 -1.1388 30 1 2.5490 1.3459 -2.0288 31 1 2.0681 4.0846 -4.4431 32 1 0.4626 -0.1198 2.0110 33 1 2.6533 -0.4792 7.6520 34 1 3.6341 2.2160 3.7589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383949735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:21 Heat of formation + Delta-G solvation = -97.846989 kcal Electronic energy + Delta-G solvation = -19951.157412 eV Core-core repulsion = 16656.263241 eV Total energy + Delta-G solvation = -3294.894171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.75566 -40.86996 -40.00062 -37.15007 -36.99574 -34.87318 -32.54051 -31.96108 -30.72365 -29.09930 -25.82381 -24.68863 -24.20550 -22.85413 -21.42331 -20.57085 -19.06145 -18.81847 -18.61089 -17.65756 -16.93260 -16.88543 -16.61015 -16.15389 -15.70575 -15.01150 -14.89866 -14.72641 -14.36277 -14.13080 -14.08561 -13.63820 -13.26050 -13.11872 -12.96907 -12.67181 -12.65523 -12.49304 -12.11439 -11.97845 -11.78030 -11.61815 -10.77213 -10.58248 -10.24475 -9.53021 -9.37952 -8.16263 -6.29262 0.09444 0.85483 1.39325 1.44352 1.50960 1.73834 1.90167 2.08229 2.37459 2.41473 2.60806 3.13584 3.75429 3.98131 4.02184 4.16250 4.25309 4.49037 4.62411 4.68694 4.79573 4.98163 5.03053 5.09280 5.24571 5.34351 5.45004 5.55905 5.60059 5.66733 5.92004 6.12963 6.35290 6.77407 6.85087 6.89511 7.34622 7.54315 8.91023 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.004426 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.827214 B = 6325.419770 C = 6601.548737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.261 3.739 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.256 1.256 13 C 0.567 3.433 14 O -0.604 6.604 15 C -0.251 4.251 16 C 0.099 3.901 17 N -0.488 5.488 18 H 0.449 0.551 19 C -0.052 4.052 20 C 0.568 3.432 21 O -0.543 6.543 22 O -0.502 6.502 23 C -0.064 4.064 24 H 0.047 0.953 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.079 0.921 29 H -0.008 1.008 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.231 0.769 33 H 0.439 0.561 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.890 -16.585 16.999 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.140 3.860 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.181 1.181 13 C 0.357 3.643 14 O -0.486 6.486 15 C -0.260 4.260 16 C -0.045 4.045 17 N -0.084 5.084 18 H 0.293 0.707 19 C -0.161 4.161 20 C 0.413 3.587 21 O -0.434 6.434 22 O -0.317 6.317 23 C -0.090 4.090 24 H 0.066 0.934 25 H 0.126 0.874 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.010 0.990 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.247 0.753 33 H 0.302 0.698 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.610 -15.872 16.699 23.712 hybrid contribution -0.091 0.917 -0.029 0.922 sum -5.700 -14.955 16.670 23.109 Atomic orbital electron populations 1.22430 0.94859 1.03977 1.02413 1.22041 0.95643 0.81133 1.04218 1.48116 1.63693 1.15021 1.05693 1.18784 0.95549 0.91606 0.80105 1.21676 0.97897 1.31292 1.06076 0.92282 1.25848 0.99768 0.97043 0.96653 1.70053 1.29693 1.42601 1.14860 0.85517 0.79630 0.78825 0.77130 1.20666 1.20716 1.18065 1.18022 0.76806 0.85516 0.83962 1.90717 1.51192 1.18669 1.88048 1.19552 1.06449 1.05349 0.94662 1.23826 0.99601 0.94586 0.86463 1.41648 1.27111 1.29613 1.10056 0.70710 1.18659 1.01144 1.04118 0.92223 1.19250 0.78507 0.76760 0.84152 1.90977 1.30688 1.45397 1.76299 1.84488 1.62589 1.54838 1.29751 1.21046 0.99495 0.97758 0.90719 0.93403 0.87366 0.91703 0.87669 0.90223 0.98986 0.95491 0.92594 0.75291 0.69768 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.20 9.03 71.98 0.65 -3.55 16 2 C 0.09 2.58 5.68 86.38 0.49 3.07 16 3 N -0.60 -25.48 2.46 -830.07 -2.04 -27.52 16 4 C 0.26 14.20 5.17 85.63 0.44 14.64 16 5 C -0.53 -30.37 8.92 25.60 0.23 -30.14 16 6 H 0.06 3.30 7.42 -2.91 -0.02 3.27 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 9 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 13 C 0.57 25.52 7.60 86.66 0.66 26.18 16 14 O -0.60 -34.37 16.68 -4.06 -0.07 -34.44 16 15 C -0.25 -8.19 5.52 -20.12 -0.11 -8.30 16 16 C 0.10 1.98 9.19 84.32 0.78 2.76 16 17 N -0.49 -7.36 6.01 -183.40 -1.10 -8.47 16 18 H 0.45 2.78 8.96 -92.71 -0.83 1.95 16 19 C -0.05 -1.19 7.02 39.97 0.28 -0.91 16 20 C 0.57 11.88 8.31 70.01 0.58 12.46 16 21 O -0.54 -15.62 17.65 19.50 0.34 -15.28 16 22 O -0.50 -5.40 13.44 -57.88 -0.78 -6.18 16 23 C -0.06 -2.02 10.51 22.59 0.24 -1.78 16 24 H 0.05 1.51 7.26 -2.39 -0.02 1.50 16 25 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.06 1.40 6.02 -2.39 -0.01 1.39 16 27 H 0.11 2.21 5.24 -2.39 -0.01 2.19 16 28 H 0.08 2.22 7.89 -2.39 -0.02 2.20 16 29 H -0.01 -0.51 7.48 -2.39 -0.02 -0.53 16 30 H 0.03 1.47 7.89 -2.38 -0.02 1.45 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.23 3.26 3.53 -2.91 -0.01 3.25 16 33 H 0.44 0.84 9.11 -74.06 -0.67 0.17 16 34 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -86.70 298.13 3.03 -83.66 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -0.33 Total: 2.62 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 4.70 Total: 15.21 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -2.86 Total: -92.61 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -0.50 Total: -55.90 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -86.70 3.03 -83.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383949735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.185 kcal (2) G-P(sol) polarization free energy of solvation -86.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds