Wall clock time and date at job start Mon Mar 30 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 N 1.46505 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 7 11 11 O 1.21439 * 120.00300 * 0.02562 * 10 9 8 12 12 C 1.48837 * 119.99629 * 179.97438 * 10 9 8 13 13 O 1.21498 * 119.99883 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99803 * 179.97438 * 12 10 9 15 15 C 1.36116 * 119.99548 * 180.02562 * 14 12 10 16 16 H 1.07998 * 120.00375 * 0.02562 * 15 14 12 17 17 C 1.39588 * 119.99685 * 180.02562 * 15 14 12 18 18 N 1.31012 * 120.00329 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47163 * 59.99882 * 19 17 15 21 21 H 1.48506 * 109.46813 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46607 * 299.99473 * 19 17 15 23 23 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 24 24 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 25 25 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 26 26 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 27 27 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 29 29 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 30 30 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 32 32 H 0.96996 * 119.99606 * 0.02562 * 9 8 7 33 33 H 0.96995 * 120.00011 * 0.02562 * 14 12 10 34 34 H 0.96994 * 120.00636 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 7 1.1075 -4.3337 -1.4223 10 6 0.7967 -4.9452 -2.5824 11 8 0.8910 -4.3410 -3.6315 12 6 0.3391 -6.3615 -2.5777 13 8 0.2453 -6.9661 -1.5280 14 7 0.0279 -6.9729 -3.7378 15 6 -0.3911 -8.2680 -3.7334 16 1 -0.4745 -8.8055 -2.8004 17 6 -0.7130 -8.9014 -4.9349 18 7 -0.6114 -8.2496 -6.0669 19 14 -1.2887 -10.6785 -4.9289 20 1 -2.5279 -10.7947 -4.1189 21 1 -1.5644 -11.1142 -6.3216 22 1 -0.2308 -11.5395 -4.3417 23 1 -0.3633 0.0031 1.0277 24 1 -0.3634 0.8884 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 4.4097 1.3412 -0.0122 27 1 4.4776 -1.2831 -0.0089 28 1 0.9328 -2.5761 0.6021 29 1 2.6188 -3.1229 0.4394 30 1 2.4683 -2.8547 -2.0212 31 1 0.7822 -2.3078 -1.8583 32 1 1.0319 -4.8162 -0.5842 33 1 0.1024 -6.4901 -4.5757 34 1 -0.8354 -8.6896 -6.9018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383954351.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:34 Heat of formation + Delta-G solvation = -37.223949 kcal Electronic energy + Delta-G solvation = -19157.098775 eV Core-core repulsion = 15897.126168 eV Total energy + Delta-G solvation = -3259.972607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.07947 -41.32645 -39.22330 -37.10109 -36.23572 -34.52470 -33.44422 -32.63832 -30.17960 -27.94299 -27.64397 -25.44616 -23.62977 -22.35436 -21.48783 -20.65263 -20.31696 -18.89703 -18.14700 -17.43828 -16.98715 -16.87009 -16.56948 -15.91881 -15.78830 -15.67681 -15.10684 -14.72618 -14.59842 -14.25674 -13.91524 -13.82103 -13.66542 -13.22852 -13.09846 -12.96710 -12.74121 -12.59883 -12.36133 -12.12558 -11.65555 -10.98879 -10.71826 -10.37396 -10.28068 -10.28011 -9.30101 -8.66757 -6.11640 0.56009 1.00680 1.38255 1.46739 1.49148 1.56770 2.05841 2.16058 2.31550 2.34814 3.14696 3.26236 3.52468 3.60698 3.61737 3.91561 4.00593 4.16677 4.31287 4.47406 4.63447 4.65511 4.70438 4.86653 5.05144 5.13435 5.24698 5.32680 5.66208 5.82839 6.08999 6.20561 6.34836 6.78362 6.97375 7.12833 7.26321 7.78017 8.48674 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.052041 B = 0.003143 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.913175 B = 8905.643529 C = 8972.695833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.194 3.806 3 N -0.533 5.533 4 C -0.054 4.054 5 C -0.052 4.052 6 N -0.454 5.454 7 C 0.101 3.899 8 C 0.110 3.890 9 N -0.688 5.688 10 C 0.522 3.478 11 O -0.565 6.565 12 C 0.390 3.610 13 O -0.614 6.614 14 N -0.510 5.510 15 C -0.345 4.345 16 H 0.101 0.899 17 C -0.004 4.004 18 N -0.896 5.896 19 Si 1.009 2.991 20 H -0.263 1.263 21 H -0.269 1.269 22 H -0.263 1.263 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.184 0.816 27 H 0.204 0.796 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.422 0.578 33 H 0.400 0.600 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 10.474 11.284 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.068 4.068 3 N -0.253 5.253 4 C -0.201 4.201 5 C -0.185 4.185 6 N -0.138 5.138 7 C -0.021 4.021 8 C -0.014 4.014 9 N -0.343 5.343 10 C 0.305 3.695 11 O -0.444 6.444 12 C 0.175 3.825 13 O -0.503 6.503 14 N -0.144 5.144 15 C -0.475 4.475 16 H 0.119 0.881 17 C -0.209 4.209 18 N -0.533 5.533 19 Si 0.830 3.170 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.188 1.188 23 H 0.115 0.885 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.201 0.799 27 H 0.221 0.779 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.261 0.739 33 H 0.235 0.765 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.158 11.175 11.022 16.238 hybrid contribution 0.285 -1.292 -0.482 1.408 sum 4.442 9.884 10.540 15.117 Atomic orbital electron populations 1.20340 0.83308 1.04649 1.04707 1.23867 0.96892 0.81395 1.04693 1.70226 1.03544 1.29688 1.21818 1.22705 0.94767 0.93996 1.08613 1.23242 0.87725 0.96932 1.10555 1.45360 1.06731 1.07139 1.54524 1.22053 1.04982 0.79318 0.95778 1.21661 1.00647 0.81260 0.97866 1.45261 1.66592 1.13242 1.09216 1.20073 0.77667 0.87450 0.84263 1.90713 1.54066 1.67254 1.32380 1.19506 0.89684 0.88285 0.85001 1.90553 1.61539 1.67269 1.30984 1.41664 1.52292 1.12307 1.08143 1.19961 1.43639 0.88127 0.95761 0.88067 1.26543 0.95513 1.05362 0.93462 1.69538 1.44238 1.40306 0.99263 0.84761 0.79162 0.74952 0.78132 1.18749 1.19312 1.18794 0.88478 0.89241 0.89814 0.79860 0.77947 0.85838 0.85457 0.91501 0.91302 0.73934 0.76518 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.04 71.24 0.72 -0.40 16 2 C 0.19 4.23 7.90 138.13 1.09 5.32 16 3 N -0.53 -13.97 11.25 -188.13 -2.12 -16.09 16 4 C -0.05 -1.17 11.87 83.52 0.99 -0.18 16 5 C -0.05 -0.94 11.58 83.09 0.96 0.03 16 6 N -0.45 -8.34 2.75 -514.30 -1.41 -9.76 16 7 C 0.10 1.41 5.79 86.38 0.50 1.91 16 8 C 0.11 2.40 6.00 86.38 0.52 2.92 16 9 N -0.69 -19.25 5.55 -465.00 -2.58 -21.83 16 10 C 0.52 20.95 7.87 87.08 0.69 21.64 16 11 O -0.57 -25.38 16.47 -3.52 -0.06 -25.44 16 12 C 0.39 18.82 7.82 87.08 0.68 19.51 16 13 O -0.61 -31.09 16.03 -3.71 -0.06 -31.15 16 14 N -0.51 -26.96 5.25 -308.87 -1.62 -28.58 16 15 C -0.35 -18.77 9.67 84.35 0.82 -17.95 16 16 H 0.10 5.61 7.15 -2.91 -0.02 5.59 16 17 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 18 N -0.90 -47.19 13.03 21.77 0.28 -46.91 16 19 Si 1.01 39.54 29.56 68.60 2.03 41.57 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 1.15 7.34 -2.39 -0.02 1.14 16 26 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 28 H 0.12 1.26 7.94 -2.39 -0.02 1.24 16 29 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.65 7.64 -2.39 -0.02 1.63 16 32 H 0.42 10.22 7.93 -92.71 -0.74 9.49 16 33 H 0.40 21.53 7.35 -92.71 -0.68 20.85 16 34 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -70.88 307.56 1.63 -69.26 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.27 Total: 35.89 kcal Atomic # 6 Polarization: 25.60 SS G_CDS: 7.43 Total: 33.03 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -7.45 Total: -123.16 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -0.12 Total: -56.59 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -70.88 1.63 -69.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383954351.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.034 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds