Wall clock time and date at job start Mon Mar 30 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47413 * 2 1 4 4 C 1.50698 * 109.47064 * 239.99762 * 2 1 3 5 5 H 1.07997 * 120.00384 * 239.99960 * 4 2 1 6 6 C 1.37885 * 119.99899 * 60.00255 * 4 2 1 7 7 N 1.31514 * 119.99888 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47035 * 59.99944 * 8 6 4 10 10 H 1.48501 * 109.46928 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47245 * 300.00023 * 8 6 4 12 12 N 1.46901 * 109.47019 * 120.00180 * 2 1 3 13 13 C 1.46895 * 110.99962 * 178.61403 * 12 2 1 14 14 C 1.39039 * 110.99809 * 302.56885 * 12 2 1 15 15 N 1.32553 * 119.66277 * 304.73709 * 14 12 2 16 16 C 1.32057 * 121.80000 * 179.97438 * 15 14 12 17 17 C 1.37765 * 120.93689 * 359.97438 * 16 15 14 18 18 C 1.39654 * 119.23371 * 0.02562 * 17 16 15 19 19 N 1.39196 * 120.82304 * 180.02562 * 18 17 16 20 20 C 1.38782 * 119.66893 * 124.46636 * 14 12 2 21 21 N 1.48021 * 120.49438 * 0.02562 * 20 14 12 22 22 O 1.21803 * 119.99760 * 91.13732 * 21 20 14 23 23 O 1.21799 * 119.99950 * 271.14221 * 21 20 14 24 24 H 1.09006 * 109.46933 * 55.55602 * 1 2 3 25 25 H 1.08997 * 109.47613 * 175.55941 * 1 2 3 26 26 H 1.09003 * 109.47158 * 295.56613 * 1 2 3 27 27 H 0.96998 * 119.99853 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47469 * 58.59880 * 13 12 2 29 29 H 1.08998 * 109.47558 * 178.59359 * 13 12 2 30 30 H 1.09000 * 109.47418 * 298.59724 * 13 12 2 31 31 H 1.08001 * 119.52751 * 180.02562 * 16 15 14 32 32 H 1.08007 * 120.38380 * 180.02562 * 17 16 15 33 33 H 0.96995 * 120.00290 * 0.02562 * 19 18 17 34 34 H 0.96996 * 119.99678 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 3.4877 -0.7409 1.2169 14 6 1.5269 -0.0965 2.3549 15 7 1.7229 1.1983 2.5600 16 6 1.2731 1.8074 3.6419 17 6 0.5763 1.1140 4.6071 18 6 0.3463 -0.2524 4.4329 19 7 -0.3543 -0.9850 5.3868 20 6 0.8300 -0.8621 3.2792 21 7 0.6086 -2.3066 3.0437 22 8 1.4101 -3.1219 3.4638 23 8 -0.3749 -2.6798 2.4298 24 1 -0.3633 0.5813 -0.8475 25 1 -0.3634 -1.0245 -0.0796 26 1 -0.3633 0.4435 0.9271 27 1 0.7090 1.1614 -3.4844 28 1 3.8851 0.2736 1.1877 29 1 3.8241 -1.2367 2.1274 30 1 3.8433 -1.2955 0.3486 31 1 1.4534 2.8644 3.7715 32 1 0.2121 1.6213 5.4883 33 1 -0.6899 -0.5470 6.1845 34 1 -0.5075 -1.9335 5.2534 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384010407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:57 Heat of formation + Delta-G solvation = 52.107948 kcal Electronic energy + Delta-G solvation = -21012.155678 eV Core-core repulsion = 17756.056793 eV Total energy + Delta-G solvation = -3256.098885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82650 -40.24900 -37.33147 -35.96816 -35.34019 -32.99021 -31.17719 -30.05840 -29.25855 -26.46828 -25.46256 -24.47966 -22.72757 -22.47261 -20.08191 -18.95537 -18.35293 -18.29700 -17.25870 -16.39439 -16.24272 -15.47700 -15.25168 -14.62779 -14.59917 -14.27344 -13.52437 -13.10847 -12.89228 -12.35118 -11.99530 -11.61334 -11.17698 -11.13606 -10.97734 -10.80506 -10.73915 -10.62990 -10.28683 -10.24527 -10.06988 -9.69792 -9.23359 -9.05545 -8.51583 -8.50358 -7.78864 -6.05159 -4.10353 0.78994 1.03139 1.20007 1.84789 3.12161 3.33236 3.37087 3.40724 3.57600 4.03165 4.42837 4.45700 4.72930 4.92179 5.12364 5.28416 5.46193 5.57518 5.87544 6.13115 6.23873 6.57378 6.60015 6.73286 6.81101 6.98077 7.02928 7.07703 7.33553 7.52983 7.73227 7.93520 7.96227 8.09831 8.16839 8.40442 8.92436 9.53974 11.02260 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025749 B = 0.006637 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.172169 B = 4217.654694 C = 4631.474487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.221 3.779 3 H 0.025 0.975 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.902 3.098 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.508 5.508 13 C 0.046 3.954 14 C 0.422 3.578 15 N -0.526 5.526 16 C 0.180 3.820 17 C -0.265 4.265 18 C 0.299 3.701 19 N -0.856 5.856 20 C -0.147 4.147 21 N 0.049 4.951 22 O -0.159 6.159 23 O -0.133 6.133 24 H 0.089 0.911 25 H 0.041 0.959 26 H -0.002 1.002 27 H 0.263 0.737 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.411 0.589 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.258 1.138 15.868 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.118 3.882 3 H 0.043 0.957 4 C -0.549 4.549 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.233 5.233 13 C -0.100 4.100 14 C 0.192 3.808 15 N -0.242 5.242 16 C 0.022 3.978 17 C -0.291 4.291 18 C 0.182 3.818 19 N -0.395 5.395 20 C -0.239 4.239 21 N 0.578 4.422 22 O -0.378 6.378 23 O -0.359 6.359 24 H 0.108 0.892 25 H 0.060 0.940 26 H 0.017 0.983 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.184 0.816 32 H 0.165 0.835 33 H 0.242 0.758 34 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.886 2.007 15.167 15.325 hybrid contribution -0.296 -0.601 0.039 0.671 sum -1.181 1.405 15.206 15.317 Atomic orbital electron populations 1.21842 0.97297 1.00770 0.99015 1.19452 0.92416 0.93004 0.83325 0.95714 1.21008 1.31913 1.12605 0.89385 0.91721 1.24896 0.94977 0.94986 0.99008 1.69893 1.36460 1.22779 1.23768 0.86500 0.79070 0.79813 0.81705 1.20039 1.21273 1.20220 1.60714 1.10598 1.51401 1.00613 1.22211 0.84783 1.00950 1.02083 1.19759 0.85622 0.86023 0.89365 1.68485 1.24255 1.09193 1.22271 1.22708 0.88000 1.00214 0.86848 1.21486 1.11241 0.91257 1.05117 1.17429 0.87245 0.91467 0.85625 1.42416 1.61266 1.12337 1.23458 1.21230 1.18475 0.82682 1.01466 1.42905 0.99244 1.02324 0.97702 1.94488 1.41182 1.49527 1.52611 1.94549 1.19437 1.84446 1.37437 0.89233 0.94025 0.98293 0.92751 0.94476 0.93455 0.89110 0.81586 0.83478 0.75838 0.76754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.82 37.16 0.33 -3.08 16 2 C 0.22 5.78 1.86 -68.87 -0.13 5.65 16 3 H 0.03 0.71 7.83 -51.93 -0.41 0.31 16 4 C -0.51 -14.19 7.95 -34.44 -0.27 -14.46 16 5 H 0.06 1.78 6.58 -52.49 -0.35 1.44 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.54 11.37 55.43 0.63 -24.91 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.51 -11.68 4.33 -174.83 -0.76 -12.44 16 13 C 0.05 0.95 9.13 60.06 0.55 1.50 16 14 C 0.42 8.60 3.72 -154.99 -0.58 8.02 16 15 N -0.53 -9.80 9.65 -12.53 -0.12 -9.92 16 16 C 0.18 2.43 11.16 -17.63 -0.20 2.23 16 17 C -0.27 -3.05 9.99 -39.23 -0.39 -3.44 16 18 C 0.30 4.14 6.81 -83.65 -0.57 3.57 16 19 N -0.86 -8.60 9.07 32.51 0.29 -8.31 16 20 C -0.15 -2.70 6.23 -79.40 -0.49 -3.20 16 21 N 0.05 0.95 3.31 34.23 0.11 1.06 16 22 O -0.16 -3.10 19.26 -29.46 -0.57 -3.67 16 23 O -0.13 -2.77 19.26 -29.46 -0.57 -3.33 16 24 H 0.09 2.49 6.20 -51.93 -0.32 2.17 16 25 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.00 -0.05 7.00 -51.93 -0.36 -0.41 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.04 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 30 H 0.09 1.92 6.43 -51.93 -0.33 1.58 16 31 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.41 2.58 8.86 -40.82 -0.36 2.22 16 34 H 0.40 4.26 8.18 -40.82 -0.33 3.93 16 LS Contribution 297.94 15.07 4.49 4.49 Total: -1.00 -32.27 297.94 -7.07 -39.34 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -3.71 Total: 2.73 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.85 Total: -1.54 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.16 Total: -54.52 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -1.13 Total: -7.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.27 -7.07 -39.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384010407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.446 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds