Wall clock time and date at job start Mon Mar 30 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47413 * 2 1 4 4 C 1.50698 * 109.47064 * 239.99762 * 2 1 3 5 5 H 1.07997 * 120.00384 * 239.99960 * 4 2 1 6 6 C 1.37885 * 119.99899 * 60.00255 * 4 2 1 7 7 N 1.31514 * 119.99888 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47035 * 59.99944 * 8 6 4 10 10 H 1.48501 * 109.46928 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47245 * 300.00023 * 8 6 4 12 12 N 1.46901 * 109.47019 * 120.00180 * 2 1 3 13 13 C 1.46895 * 110.99962 * 178.61403 * 12 2 1 14 14 C 1.39039 * 110.99809 * 302.56885 * 12 2 1 15 15 N 1.32553 * 119.66277 * 304.73709 * 14 12 2 16 16 C 1.32057 * 121.80000 * 179.97438 * 15 14 12 17 17 C 1.37765 * 120.93689 * 359.97438 * 16 15 14 18 18 C 1.39654 * 119.23371 * 0.02562 * 17 16 15 19 19 N 1.39196 * 120.82304 * 180.02562 * 18 17 16 20 20 C 1.38782 * 119.66893 * 124.46636 * 14 12 2 21 21 N 1.48021 * 120.49438 * 0.02562 * 20 14 12 22 22 O 1.21803 * 119.99760 * 91.13732 * 21 20 14 23 23 O 1.21799 * 119.99950 * 271.14221 * 21 20 14 24 24 H 1.09006 * 109.46933 * 55.55602 * 1 2 3 25 25 H 1.08997 * 109.47613 * 175.55941 * 1 2 3 26 26 H 1.09003 * 109.47158 * 295.56613 * 1 2 3 27 27 H 0.96998 * 119.99853 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47469 * 58.59880 * 13 12 2 29 29 H 1.08998 * 109.47558 * 178.59359 * 13 12 2 30 30 H 1.09000 * 109.47418 * 298.59724 * 13 12 2 31 31 H 1.08001 * 119.52751 * 180.02562 * 16 15 14 32 32 H 1.08007 * 120.38380 * 180.02562 * 17 16 15 33 33 H 0.96995 * 120.00290 * 0.02562 * 19 18 17 34 34 H 0.96996 * 119.99678 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 3.4877 -0.7409 1.2169 14 6 1.5269 -0.0965 2.3549 15 7 1.7229 1.1983 2.5600 16 6 1.2731 1.8074 3.6419 17 6 0.5763 1.1140 4.6071 18 6 0.3463 -0.2524 4.4329 19 7 -0.3543 -0.9850 5.3868 20 6 0.8300 -0.8621 3.2792 21 7 0.6086 -2.3066 3.0437 22 8 1.4101 -3.1219 3.4638 23 8 -0.3749 -2.6798 2.4298 24 1 -0.3633 0.5813 -0.8475 25 1 -0.3634 -1.0245 -0.0796 26 1 -0.3633 0.4435 0.9271 27 1 0.7090 1.1614 -3.4844 28 1 3.8851 0.2736 1.1877 29 1 3.8241 -1.2367 2.1274 30 1 3.8433 -1.2955 0.3486 31 1 1.4534 2.8644 3.7715 32 1 0.2121 1.6213 5.4883 33 1 -0.6899 -0.5470 6.1845 34 1 -0.5075 -1.9335 5.2534 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384010407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:56 Heat of formation + Delta-G solvation = 28.793513 kcal Electronic energy + Delta-G solvation = -21013.166668 eV Core-core repulsion = 17756.056793 eV Total energy + Delta-G solvation = -3257.109875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.26096 -41.57971 -38.84102 -37.49041 -36.55558 -34.93972 -32.57534 -31.40246 -31.00976 -28.05343 -27.17778 -26.24429 -24.19774 -23.82889 -21.79644 -20.31716 -19.80284 -19.58211 -18.57536 -18.24635 -17.63797 -17.18046 -16.55063 -16.15092 -15.95964 -15.59807 -15.06688 -14.82294 -14.26263 -13.96784 -13.72141 -13.08442 -12.98359 -12.81516 -12.72083 -12.70175 -12.34567 -12.22676 -12.22068 -12.16873 -12.05023 -11.23563 -10.86915 -10.60964 -10.50374 -9.60028 -9.48345 -8.17520 -6.30143 -0.52095 -0.42186 0.05535 0.46444 1.41518 1.44646 1.51847 2.12713 2.37957 2.41602 2.72519 3.12640 3.34465 3.61140 3.69636 3.91953 4.32687 4.46260 4.54877 4.57815 4.65298 4.84129 4.85742 5.01106 5.10336 5.23016 5.35097 5.57569 5.63741 5.75162 5.96945 6.09373 6.38071 6.48135 6.54430 6.73382 6.80972 7.38091 8.89551 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025749 B = 0.006637 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.172169 B = 4217.654694 C = 4631.474487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.235 3.765 3 H -0.008 1.008 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.268 1.268 12 N -0.522 5.522 13 C 0.052 3.948 14 C 0.390 3.610 15 N -0.560 5.560 16 C 0.171 3.829 17 C -0.233 4.233 18 C 0.301 3.699 19 N -0.835 5.835 20 C -0.171 4.171 21 N 0.053 4.947 22 O -0.149 6.149 23 O -0.176 6.176 24 H 0.067 0.933 25 H 0.024 0.976 26 H 0.009 0.991 27 H 0.265 0.735 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.208 0.792 32 H 0.203 0.797 33 H 0.432 0.568 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 1.861 18.070 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 H 0.010 0.990 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.182 4.182 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.192 1.192 12 N -0.246 5.246 13 C -0.094 4.094 14 C 0.160 3.840 15 N -0.277 5.277 16 C 0.016 3.984 17 C -0.258 4.258 18 C 0.181 3.819 19 N -0.374 5.374 20 C -0.262 4.262 21 N 0.580 4.420 22 O -0.374 6.374 23 O -0.393 6.393 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.224 0.776 32 H 0.220 0.780 33 H 0.267 0.733 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.088 2.742 17.402 17.651 hybrid contribution -0.247 -0.755 -0.413 0.895 sum -1.334 1.988 16.990 17.157 Atomic orbital electron populations 1.21564 0.97605 0.99129 0.98489 1.19034 0.91950 0.91287 0.84681 0.99008 1.21291 1.32183 1.12676 0.90676 0.92226 1.25702 0.95038 0.95628 1.01867 1.70010 1.37219 1.23892 1.24472 0.85503 0.78902 0.78500 0.78101 1.19947 1.20540 1.19246 1.60475 1.11440 1.51850 1.00879 1.22141 0.84247 1.00615 1.02398 1.19575 0.87919 0.87220 0.89319 1.68376 1.25936 1.08443 1.24963 1.23458 0.87290 1.01992 0.85644 1.22048 1.08277 0.89779 1.05727 1.17675 0.86926 0.92479 0.84794 1.42418 1.59569 1.12246 1.23180 1.21381 1.20250 0.81311 1.03292 1.43165 0.98684 1.03161 0.96965 1.94447 1.40713 1.50479 1.51760 1.94547 1.20465 1.85125 1.39198 0.91400 0.95690 0.97211 0.92611 0.94965 0.91483 0.90391 0.77552 0.77957 0.73277 0.76858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.91 8.82 71.98 0.64 -5.27 16 2 C 0.24 12.73 1.86 44.17 0.08 12.81 16 3 H -0.01 -0.46 7.83 -2.39 -0.02 -0.48 16 4 C -0.53 -30.37 7.95 25.60 0.20 -30.16 16 5 H 0.06 3.39 6.58 -2.91 -0.02 3.37 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -53.80 11.37 21.45 0.24 -53.56 16 8 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.52 -24.63 4.33 -707.03 -3.06 -27.69 16 13 C 0.05 2.22 9.13 127.69 1.17 3.38 16 14 C 0.39 15.86 3.72 132.92 0.49 16.36 16 15 N -0.56 -20.40 9.65 -193.55 -1.87 -22.26 16 16 C 0.17 4.05 11.16 84.55 0.94 5.00 16 17 C -0.23 -4.24 9.99 22.50 0.22 -4.01 16 18 C 0.30 7.37 6.81 38.54 0.26 7.64 16 19 N -0.83 -13.78 9.07 -51.05 -0.46 -14.25 16 20 C -0.17 -6.10 6.23 36.73 0.23 -5.87 16 21 N 0.05 2.08 3.31 -45.62 -0.15 1.93 16 22 O -0.15 -5.73 19.26 18.88 0.36 -5.37 16 23 O -0.18 -7.54 19.26 18.89 0.36 -7.18 16 24 H 0.07 3.91 6.20 -2.38 -0.01 3.90 16 25 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.01 0.46 7.00 -2.39 -0.02 0.44 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 29 H 0.07 2.51 8.11 -2.39 -0.02 2.49 16 30 H 0.08 3.41 6.43 -2.39 -0.02 3.40 16 31 H 0.21 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.20 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.43 3.35 8.86 -92.71 -0.82 2.53 16 34 H 0.40 7.48 8.18 -92.71 -0.76 6.72 16 Total: -1.00 -73.68 297.94 1.73 -71.95 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -0.42 Total: 8.41 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 4.69 Total: 1.29 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -5.30 Total: -115.83 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.73 Total: -12.54 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.68 1.73 -71.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384010407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.745 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds