Wall clock time and date at job start Mon Mar 30 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47610 * 2 1 4 4 C 1.50702 * 109.46868 * 120.00596 * 2 1 3 5 5 H 1.08000 * 119.99997 * 119.99896 * 4 2 1 6 6 C 1.37876 * 119.99689 * 299.99791 * 4 2 1 7 7 N 1.31509 * 120.00346 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47238 * 89.99383 * 8 6 4 10 10 H 1.48497 * 109.47152 * 209.99971 * 8 6 4 11 11 H 1.48504 * 109.46827 * 329.99950 * 8 6 4 12 12 N 1.46907 * 109.46757 * 239.99841 * 2 1 3 13 13 C 1.46907 * 110.99674 * 179.54028 * 12 2 1 14 14 C 1.39032 * 110.99762 * 55.59463 * 12 2 1 15 15 N 1.32545 * 119.66949 * 58.26953 * 14 12 2 16 16 C 1.32064 * 121.80344 * 180.02562 * 15 14 12 17 17 C 1.37774 * 120.93623 * 359.74338 * 16 15 14 18 18 C 1.39650 * 119.22534 * 0.48573 * 17 16 15 19 19 N 1.39204 * 120.81745 * 179.79992 * 18 17 16 20 20 C 1.38794 * 119.66455 * 238.25197 * 14 12 2 21 21 N 1.48021 * 120.49075 * 0.02562 * 20 14 12 22 22 O 1.21801 * 120.00265 * 267.83325 * 21 20 14 23 23 O 1.21804 * 119.99670 * 87.84144 * 21 20 14 24 24 H 1.09000 * 109.47554 * 185.43632 * 1 2 3 25 25 H 1.08998 * 109.47001 * 305.44168 * 1 2 3 26 26 H 1.09003 * 109.46935 * 65.43307 * 1 2 3 27 27 H 0.97001 * 120.00401 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47169 * 301.83691 * 13 12 2 29 29 H 1.09000 * 109.46777 * 61.83540 * 13 12 2 30 30 H 1.08991 * 109.46591 * 181.83376 * 13 12 2 31 31 H 1.08003 * 119.52879 * 179.97438 * 16 15 14 32 32 H 1.07994 * 120.38610 * 180.26414 * 17 16 15 33 33 H 0.96998 * 119.99701 * 179.71934 * 19 18 17 34 34 H 0.96997 * 119.99949 * 359.44450 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5887 1.1313 6 6 1.6991 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.6304 -0.5445 4.4119 10 1 1.3442 -0.9493 5.1122 11 1 2.4877 -2.5657 3.7121 12 7 2.0196 -0.6926 -1.1995 13 6 3.4881 -0.7027 -1.2390 14 6 1.4941 -0.1222 -2.3534 15 7 1.7041 1.1621 -2.6047 16 6 1.2244 1.7470 -3.6873 17 6 0.4852 1.0365 -4.6076 18 6 0.2349 -0.3186 -4.3812 19 7 -0.5115 -1.0670 -5.2870 20 6 0.7553 -0.9037 -3.2309 21 7 0.5231 -2.3376 -2.9463 22 8 1.2881 -3.1774 -3.3858 23 8 -0.4331 -2.6777 -2.2729 24 1 -0.3634 -1.0230 0.0974 25 1 -0.3633 0.5959 0.8372 26 1 -0.3633 0.4273 -0.9347 27 1 0.7095 1.1616 3.4844 28 1 3.8592 0.3220 -1.2188 29 1 3.8710 -1.2449 -0.3744 30 1 3.8235 -1.1927 -2.1529 31 1 1.4175 2.7962 -3.8554 32 1 0.1008 1.5228 -5.4920 33 1 -0.6748 -2.0084 -5.1199 34 1 -0.8717 -0.6461 -6.0832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384010408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:00 Heat of formation + Delta-G solvation = 51.881907 kcal Electronic energy + Delta-G solvation = -21029.853894 eV Core-core repulsion = 17773.745207 eV Total energy + Delta-G solvation = -3256.108687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81758 -40.24721 -37.32954 -35.95397 -35.33876 -32.98494 -31.17459 -30.06133 -29.26214 -26.45440 -25.45408 -24.49270 -22.70922 -22.48090 -20.08522 -18.94595 -18.35234 -18.28159 -17.25159 -16.39478 -16.24126 -15.46769 -15.26445 -14.62866 -14.59887 -14.26493 -13.52064 -13.11768 -12.89711 -12.33700 -11.99265 -11.60536 -11.17839 -11.14256 -10.95833 -10.81938 -10.72748 -10.61733 -10.29205 -10.22331 -10.07384 -9.70603 -9.22046 -9.05944 -8.52255 -8.49978 -7.79505 -6.05236 -4.10175 0.78899 1.04519 1.20024 1.85728 3.12440 3.31301 3.37805 3.42994 3.57495 4.03332 4.42957 4.45766 4.73026 4.92109 5.12311 5.28508 5.46241 5.57579 5.87347 6.12803 6.24606 6.57304 6.60443 6.72382 6.81392 6.97297 7.02362 7.08003 7.32871 7.53454 7.73853 7.92282 7.96858 8.11000 8.16289 8.40210 8.92929 9.54253 11.02317 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.006680 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.922371 B = 4190.454227 C = 4595.209383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.222 3.778 3 H 0.024 0.976 4 C -0.509 4.509 5 H 0.065 0.935 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.901 3.099 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.508 5.508 13 C 0.046 3.954 14 C 0.423 3.577 15 N -0.527 5.527 16 C 0.180 3.820 17 C -0.265 4.265 18 C 0.299 3.701 19 N -0.856 5.856 20 C -0.147 4.147 21 N 0.048 4.952 22 O -0.160 6.160 23 O -0.131 6.131 24 H 0.042 0.958 25 H 0.088 0.912 26 H -0.002 1.002 27 H 0.262 0.738 28 H 0.037 0.963 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.404 0.596 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 0.968 -15.835 15.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.119 3.881 3 H 0.041 0.959 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.234 5.234 13 C -0.100 4.100 14 C 0.193 3.807 15 N -0.243 5.243 16 C 0.022 3.978 17 C -0.291 4.291 18 C 0.182 3.818 19 N -0.395 5.395 20 C -0.238 4.238 21 N 0.578 4.422 22 O -0.379 6.379 23 O -0.358 6.358 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.017 0.983 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.184 0.816 32 H 0.165 0.835 33 H 0.233 0.767 34 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.145 1.829 -15.193 15.346 hybrid contribution -0.359 -0.584 0.013 0.685 sum -1.504 1.246 -15.180 15.305 Atomic orbital electron populations 1.21854 0.97257 1.01038 0.98811 1.19462 0.92434 0.92879 0.83358 0.95860 1.21031 1.31795 1.12585 0.89320 0.91672 1.24895 0.94971 0.95010 0.99019 1.69901 1.36517 1.22848 1.23663 0.86442 0.78406 0.80143 0.82140 1.20689 1.21155 1.19671 1.60744 1.09632 1.52516 1.00469 1.22202 0.84972 1.00911 1.01959 1.19748 0.85710 0.85817 0.89431 1.68484 1.25017 1.09916 1.20905 1.22707 0.88058 1.00034 0.86992 1.21484 1.10614 0.91558 1.05427 1.17432 0.87074 0.91359 0.85906 1.42420 1.58355 1.13046 1.25653 1.21231 1.17316 0.83310 1.01911 1.42900 0.99100 1.02248 0.97932 1.94487 1.42969 1.46747 1.53657 1.94553 1.20846 1.85960 1.34397 0.93844 0.89295 0.98326 0.92813 0.94412 0.89219 0.93492 0.81596 0.83479 0.76744 0.75840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.80 37.16 0.33 -3.09 16 2 C 0.22 5.79 1.86 -68.86 -0.13 5.66 16 3 H 0.02 0.67 7.93 -51.93 -0.41 0.26 16 4 C -0.51 -14.15 7.96 -34.44 -0.27 -14.43 16 5 H 0.07 1.81 6.71 -52.49 -0.35 1.46 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.56 11.38 55.43 0.63 -24.93 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.51 -11.69 4.33 -174.82 -0.76 -12.44 16 13 C 0.05 0.95 9.12 60.07 0.55 1.49 16 14 C 0.42 8.61 3.61 -154.99 -0.56 8.05 16 15 N -0.53 -9.78 9.70 -12.53 -0.12 -9.90 16 16 C 0.18 2.42 11.16 -17.62 -0.20 2.22 16 17 C -0.26 -3.05 9.99 -39.22 -0.39 -3.44 16 18 C 0.30 4.15 6.81 -83.64 -0.57 3.58 16 19 N -0.86 -8.64 9.07 32.51 0.29 -8.34 16 20 C -0.15 -2.69 6.23 -79.40 -0.49 -3.19 16 21 N 0.05 0.95 3.31 34.23 0.11 1.06 16 22 O -0.16 -3.13 19.26 -29.46 -0.57 -3.70 16 23 O -0.13 -2.75 19.26 -29.46 -0.57 -3.32 16 24 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.09 2.47 6.24 -51.93 -0.32 2.14 16 26 H 0.00 -0.06 6.91 -51.93 -0.36 -0.41 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.09 1.88 6.55 -51.93 -0.34 1.54 16 30 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 31 H 0.17 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.40 4.28 8.19 -40.82 -0.33 3.95 16 34 H 0.41 2.60 8.86 -40.82 -0.36 2.23 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -32.33 298.12 -7.06 -39.39 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.73 Total: 2.64 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.83 Total: -1.48 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.16 Total: -54.55 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -1.13 Total: -7.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.33 -7.06 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384010408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.273 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds