Wall clock time and date at job start Mon Mar 30 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47610 * 2 1 4 4 C 1.50702 * 109.46868 * 120.00596 * 2 1 3 5 5 H 1.08000 * 119.99997 * 119.99896 * 4 2 1 6 6 C 1.37876 * 119.99689 * 299.99791 * 4 2 1 7 7 N 1.31509 * 120.00346 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47238 * 89.99383 * 8 6 4 10 10 H 1.48497 * 109.47152 * 209.99971 * 8 6 4 11 11 H 1.48504 * 109.46827 * 329.99950 * 8 6 4 12 12 N 1.46907 * 109.46757 * 239.99841 * 2 1 3 13 13 C 1.46907 * 110.99674 * 179.54028 * 12 2 1 14 14 C 1.39032 * 110.99762 * 55.59463 * 12 2 1 15 15 N 1.32545 * 119.66949 * 58.26953 * 14 12 2 16 16 C 1.32064 * 121.80344 * 180.02562 * 15 14 12 17 17 C 1.37774 * 120.93623 * 359.74338 * 16 15 14 18 18 C 1.39650 * 119.22534 * 0.48573 * 17 16 15 19 19 N 1.39204 * 120.81745 * 179.79992 * 18 17 16 20 20 C 1.38794 * 119.66455 * 238.25197 * 14 12 2 21 21 N 1.48021 * 120.49075 * 0.02562 * 20 14 12 22 22 O 1.21801 * 120.00265 * 267.83325 * 21 20 14 23 23 O 1.21804 * 119.99670 * 87.84144 * 21 20 14 24 24 H 1.09000 * 109.47554 * 185.43632 * 1 2 3 25 25 H 1.08998 * 109.47001 * 305.44168 * 1 2 3 26 26 H 1.09003 * 109.46935 * 65.43307 * 1 2 3 27 27 H 0.97001 * 120.00401 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47169 * 301.83691 * 13 12 2 29 29 H 1.09000 * 109.46777 * 61.83540 * 13 12 2 30 30 H 1.08991 * 109.46591 * 181.83376 * 13 12 2 31 31 H 1.08003 * 119.52879 * 179.97438 * 16 15 14 32 32 H 1.07994 * 120.38610 * 180.26414 * 17 16 15 33 33 H 0.96998 * 119.99701 * 179.71934 * 19 18 17 34 34 H 0.96997 * 119.99949 * 359.44450 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5887 1.1313 6 6 1.6991 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.6304 -0.5445 4.4119 10 1 1.3442 -0.9493 5.1122 11 1 2.4877 -2.5657 3.7121 12 7 2.0196 -0.6926 -1.1995 13 6 3.4881 -0.7027 -1.2390 14 6 1.4941 -0.1222 -2.3534 15 7 1.7041 1.1621 -2.6047 16 6 1.2244 1.7470 -3.6873 17 6 0.4852 1.0365 -4.6076 18 6 0.2349 -0.3186 -4.3812 19 7 -0.5115 -1.0670 -5.2870 20 6 0.7553 -0.9037 -3.2309 21 7 0.5231 -2.3376 -2.9463 22 8 1.2881 -3.1774 -3.3858 23 8 -0.4331 -2.6777 -2.2729 24 1 -0.3634 -1.0230 0.0974 25 1 -0.3633 0.5959 0.8372 26 1 -0.3633 0.4273 -0.9347 27 1 0.7095 1.1616 3.4844 28 1 3.8592 0.3220 -1.2188 29 1 3.8710 -1.2449 -0.3744 30 1 3.8235 -1.1927 -2.1529 31 1 1.4175 2.7962 -3.8554 32 1 0.1008 1.5228 -5.4920 33 1 -0.6748 -2.0084 -5.1199 34 1 -0.8717 -0.6461 -6.0832 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384010408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:59 Heat of formation + Delta-G solvation = 28.467409 kcal Electronic energy + Delta-G solvation = -21030.869223 eV Core-core repulsion = 17773.745207 eV Total energy + Delta-G solvation = -3257.124016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.25607 -41.58012 -38.83874 -37.48283 -36.55567 -34.93804 -32.56705 -31.42940 -30.99329 -28.04214 -27.17431 -26.25365 -24.18666 -23.83460 -21.79893 -20.31188 -19.79501 -19.57951 -18.56787 -18.26092 -17.63222 -17.18129 -16.55652 -16.14745 -15.95638 -15.59835 -15.08384 -14.82060 -14.25581 -13.95584 -13.71555 -13.09476 -12.96997 -12.81211 -12.72864 -12.70745 -12.33526 -12.23816 -12.21920 -12.15470 -12.05435 -11.24125 -10.86601 -10.62000 -10.49442 -9.59581 -9.49531 -8.17888 -6.30286 -0.52211 -0.41570 0.05468 0.47001 1.40964 1.42845 1.53878 2.12847 2.37669 2.41679 2.72676 3.12380 3.34448 3.61108 3.69713 3.91995 4.32610 4.46396 4.55199 4.58096 4.64989 4.83814 4.85326 5.00501 5.10592 5.23227 5.34218 5.57509 5.63852 5.75126 5.97709 6.09088 6.38144 6.47818 6.54861 6.73629 6.80216 7.38038 8.89447 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025590 B = 0.006680 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.922371 B = 4190.454227 C = 4595.209383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.236 3.764 3 H -0.010 1.010 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.522 5.522 13 C 0.052 3.948 14 C 0.390 3.610 15 N -0.560 5.560 16 C 0.171 3.829 17 C -0.233 4.233 18 C 0.300 3.700 19 N -0.835 5.835 20 C -0.170 4.170 21 N 0.053 4.947 22 O -0.149 6.149 23 O -0.176 6.176 24 H 0.026 0.974 25 H 0.066 0.934 26 H 0.009 0.991 27 H 0.265 0.735 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.208 0.792 32 H 0.204 0.796 33 H 0.403 0.597 34 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 1.678 -18.059 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 H 0.008 0.992 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.196 1.196 12 N -0.247 5.247 13 C -0.094 4.094 14 C 0.160 3.840 15 N -0.277 5.277 16 C 0.016 3.984 17 C -0.258 4.258 18 C 0.181 3.819 19 N -0.374 5.374 20 C -0.262 4.262 21 N 0.580 4.420 22 O -0.374 6.374 23 O -0.393 6.393 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.220 0.780 33 H 0.231 0.769 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -1.415 2.554 -17.444 17.686 hybrid contribution -0.291 -0.737 0.468 0.920 sum -1.706 1.817 -16.976 17.158 Atomic orbital electron populations 1.21569 0.97521 0.99352 0.98327 1.19041 0.91992 0.91132 0.84715 0.99198 1.21295 1.32068 1.12614 0.90639 0.92312 1.25698 0.95032 0.95655 1.01868 1.70015 1.37256 1.23939 1.24413 0.85442 0.78198 0.78885 0.78445 1.19650 1.20575 1.19580 1.60498 1.10505 1.52922 1.00771 1.22134 0.84389 1.00593 1.02301 1.19565 0.87923 0.87078 0.89416 1.68377 1.26679 1.09131 1.23549 1.23465 0.87377 1.01845 0.85697 1.22049 1.07793 0.89964 1.06008 1.17682 0.86823 0.92416 0.84988 1.42423 1.56713 1.12878 1.25409 1.21388 1.19052 0.81936 1.03802 1.43166 0.98509 1.03090 0.97209 1.94445 1.42422 1.47736 1.52819 1.94551 1.21997 1.86629 1.36154 0.95530 0.91487 0.97202 0.92617 0.94887 0.90490 0.91493 0.77508 0.77954 0.76862 0.73279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.89 8.80 71.98 0.63 -5.26 16 2 C 0.24 12.77 1.86 44.17 0.08 12.85 16 3 H -0.01 -0.57 7.93 -2.39 -0.02 -0.59 16 4 C -0.53 -30.31 7.96 25.60 0.20 -30.11 16 5 H 0.06 3.37 6.71 -2.91 -0.02 3.35 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -53.84 11.38 21.45 0.24 -53.60 16 8 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.52 -24.65 4.33 -707.00 -3.06 -27.71 16 13 C 0.05 2.21 9.12 127.69 1.16 3.37 16 14 C 0.39 15.87 3.61 132.93 0.48 16.35 16 15 N -0.56 -20.29 9.70 -193.54 -1.88 -22.17 16 16 C 0.17 4.03 11.16 84.55 0.94 4.97 16 17 C -0.23 -4.23 9.99 22.50 0.22 -4.00 16 18 C 0.30 7.39 6.81 38.53 0.26 7.65 16 19 N -0.83 -13.87 9.07 -51.05 -0.46 -14.33 16 20 C -0.17 -6.10 6.23 36.73 0.23 -5.87 16 21 N 0.05 2.09 3.31 -45.62 -0.15 1.94 16 22 O -0.15 -5.77 19.26 18.89 0.36 -5.41 16 23 O -0.18 -7.60 19.26 18.88 0.36 -7.24 16 24 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 3.86 6.24 -2.39 -0.01 3.84 16 26 H 0.01 0.46 6.91 -2.39 -0.02 0.44 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.03 1.38 8.08 -2.39 -0.02 1.37 16 29 H 0.08 3.36 6.55 -2.39 -0.02 3.35 16 30 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 31 H 0.21 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.40 7.53 8.19 -92.71 -0.76 6.77 16 34 H 0.43 3.38 8.86 -92.71 -0.82 2.56 16 Total: -1.00 -73.87 298.12 1.70 -72.17 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -0.42 Total: 8.13 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.67 Total: 1.37 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -5.31 Total: -115.87 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.73 Total: -12.65 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -73.87 1.70 -72.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384010408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.638 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds