Wall clock time and date at job start Mon Mar 30 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47505 * 2 1 4 4 C 1.36878 * 126.39829 * 265.02999 * 3 2 1 5 5 C 1.34666 * 106.81597 * 180.23772 * 4 3 2 6 6 N 1.34129 * 108.02165 * 359.60606 * 5 4 3 7 7 C 1.30498 * 109.25671 * 0.40230 * 6 5 4 8 8 C 1.50696 * 125.65003 * 179.77584 * 7 6 5 9 9 N 1.46499 * 109.46962 * 269.97260 * 8 7 6 10 10 C 1.34776 * 120.00146 * 180.02562 * 9 8 7 11 11 O 1.21445 * 120.00080 * 359.97438 * 10 9 8 12 12 C 1.48834 * 120.00363 * 180.02562 * 10 9 8 13 13 O 1.21494 * 119.99791 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99945 * 179.97438 * 12 10 9 15 15 C 1.36118 * 119.99760 * 180.02562 * 14 12 10 16 16 H 1.08007 * 120.00299 * 359.97438 * 15 14 12 17 17 C 1.39589 * 120.00049 * 179.97438 * 15 14 12 18 18 N 1.31012 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47087 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47326 * 120.00000 * 19 17 15 22 22 H 1.48500 * 109.47410 * 239.99903 * 19 17 15 23 23 H 1.09001 * 109.47324 * 300.00335 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99749 * 1 2 3 25 25 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47534 * 240.00174 * 2 1 3 27 27 H 1.09008 * 109.47437 * 119.99631 * 2 1 3 28 28 H 1.08002 * 126.58785 * 359.96564 * 4 3 2 29 29 H 1.08003 * 125.98708 * 179.75770 * 5 4 3 30 30 H 1.08996 * 109.47237 * 29.97295 * 8 7 6 31 31 H 1.09004 * 109.47461 * 149.97686 * 8 7 6 32 32 H 0.97003 * 120.00150 * 0.02562 * 9 8 7 33 33 H 0.96996 * 120.00506 * 0.02562 * 14 12 10 34 34 H 0.97001 * 120.00374 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3792 2.1152 -1.0976 5 6 2.7703 3.3226 -0.6475 6 7 2.6434 3.3288 0.6878 7 6 2.1965 2.1681 1.0830 8 6 1.9240 1.7718 2.5111 9 7 3.1329 1.1843 3.0940 10 6 3.1244 0.7535 4.3710 11 8 2.1149 0.8528 5.0387 12 6 4.3527 0.1572 4.9634 13 8 5.3631 0.0591 4.2959 14 7 4.3443 -0.2732 6.2406 15 6 5.4678 -0.8181 6.7825 16 1 6.3658 -0.9060 6.1889 17 6 5.4593 -1.2633 8.1054 18 7 4.3699 -1.1571 8.8254 19 14 7.0009 -2.0118 8.8489 20 1 8.0865 -2.0178 7.8356 21 1 7.4249 -1.2076 10.0231 22 1 6.7171 -3.4044 9.2793 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.3586 1.7873 -2.1264 29 1 3.1220 4.1431 -1.2554 30 1 1.6358 2.6531 3.0841 31 1 1.1158 1.0409 2.5375 32 1 3.9394 1.1054 2.5608 33 1 3.5378 -0.1946 6.7736 34 1 4.3639 -1.4668 9.7446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385217619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:32 Heat of formation + Delta-G solvation = -11.411085 kcal Electronic energy + Delta-G solvation = -19513.640679 eV Core-core repulsion = 16254.787401 eV Total energy + Delta-G solvation = -3258.853277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.28314 -39.46368 -37.25246 -35.23215 -34.84891 -34.00689 -31.44093 -30.54308 -30.03956 -26.82707 -25.48647 -23.98379 -22.51935 -21.51241 -20.09644 -19.39272 -18.36140 -17.54618 -16.69510 -16.12409 -15.43852 -15.35691 -14.90410 -14.81193 -14.38754 -14.10491 -13.91370 -13.76100 -13.18927 -12.96270 -12.87230 -12.58737 -12.41674 -12.11470 -11.78711 -11.69131 -11.22423 -10.56456 -10.42704 -10.39223 -10.06565 -9.78185 -9.74721 -8.87274 -8.67443 -8.25302 -8.24201 -6.68781 -4.00824 1.77869 2.39652 2.55437 2.89612 3.13007 3.16545 3.23568 3.58346 4.06233 4.22102 4.26174 4.34684 4.57741 4.63642 4.89910 4.98292 5.13399 5.17763 5.19417 5.30823 5.43426 5.53802 5.71015 5.72716 6.03057 6.13307 6.60409 6.62877 6.97387 7.29727 7.63772 7.82716 7.97827 8.28916 8.56175 8.94136 9.29741 9.83151 10.46064 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.003764 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.600835 B = 7437.186382 C = 7604.960604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.447 5.447 4 C -0.051 4.051 5 C -0.030 4.030 6 N -0.472 5.472 7 C 0.190 3.810 8 C 0.208 3.792 9 N -0.711 5.711 10 C 0.516 3.484 11 O -0.544 6.544 12 C 0.395 3.605 13 O -0.597 6.597 14 N -0.498 5.498 15 C -0.305 4.305 16 H 0.113 0.887 17 C 0.031 3.969 18 N -0.868 5.868 19 Si 0.939 3.061 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.175 0.825 29 H 0.171 0.829 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.412 0.588 33 H 0.405 0.595 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 1.601 -16.656 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.130 5.130 4 C -0.185 4.185 5 C -0.179 4.179 6 N -0.191 5.191 7 C -0.072 4.072 8 C 0.083 3.917 9 N -0.367 5.367 10 C 0.301 3.699 11 O -0.421 6.421 12 C 0.179 3.821 13 O -0.485 6.485 14 N -0.132 5.132 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.506 5.506 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.192 0.808 29 H 0.188 0.812 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.248 0.752 33 H 0.240 0.760 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.288 2.063 -15.878 17.592 hybrid contribution 0.337 -0.964 -0.283 1.059 sum -6.950 1.099 -16.161 17.626 Atomic orbital electron populations 1.22168 0.93777 1.03490 1.03283 1.21966 0.95901 0.79762 1.05213 1.45534 1.47983 1.12634 1.06811 1.22745 1.08779 0.94231 0.92742 1.22343 1.06735 0.97559 0.91220 1.70282 1.17124 1.19521 1.12171 1.23100 1.05500 0.87824 0.90728 1.19429 0.88289 0.99629 0.84338 1.45673 1.14775 1.62762 1.13520 1.20725 0.89664 0.78130 0.81366 1.90701 1.34737 1.56079 1.60566 1.18865 0.88378 0.90168 0.84709 1.90590 1.33762 1.63079 1.61068 1.41559 1.14474 1.47658 1.09503 1.19944 0.92234 1.35696 0.95704 0.86894 1.25592 0.98990 0.96871 0.96125 1.69488 1.27693 1.43334 1.10056 0.85665 0.80486 0.78451 0.79005 1.18700 1.20246 1.20285 0.91504 0.91853 0.90245 0.88677 0.88440 0.80807 0.81180 0.88353 0.90076 0.75189 0.75969 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.15 0.38 -0.78 16 2 C 0.09 0.76 6.40 -4.04 -0.03 0.73 16 3 N -0.45 -4.86 2.75 -113.90 -0.31 -5.18 16 4 C -0.05 -0.51 11.58 -16.56 -0.19 -0.70 16 5 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 6 N -0.47 -7.14 11.25 -10.82 -0.12 -7.26 16 7 C 0.19 2.62 7.27 -155.42 -1.13 1.49 16 8 C 0.21 3.04 5.82 -5.20 -0.03 3.01 16 9 N -0.71 -12.49 5.54 -62.11 -0.34 -12.83 16 10 C 0.52 11.12 7.87 -11.87 -0.09 11.03 16 11 O -0.54 -12.44 16.47 5.41 0.09 -12.35 16 12 C 0.39 9.92 7.82 -11.88 -0.09 9.83 16 13 O -0.60 -16.08 16.03 5.37 0.09 -16.00 16 14 N -0.50 -13.24 5.25 -11.59 -0.06 -13.30 16 15 C -0.31 -8.37 9.67 -15.15 -0.15 -8.52 16 16 H 0.11 3.18 7.15 -52.48 -0.38 2.80 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 18 N -0.87 -23.08 13.03 55.53 0.72 -22.35 16 19 Si 0.94 19.96 29.56 -169.99 -5.02 14.93 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.88 7.92 -51.92 -0.41 0.46 16 28 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.17 1.57 8.06 -52.48 -0.42 1.14 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.06 7.36 -51.93 -0.38 0.68 16 32 H 0.41 7.28 7.92 -40.82 -0.32 6.95 16 33 H 0.40 10.81 7.35 -40.82 -0.30 10.51 16 34 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -32.46 307.58 -5.83 -38.29 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -3.86 Total: 15.18 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: -1.64 Total: 16.24 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.12 Total: -60.93 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: 0.18 Total: -28.35 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.46 -5.83 -38.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385217619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.875 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds