Wall clock time and date at job start Mon Mar 30 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47505 * 2 1 4 4 C 1.36878 * 126.39829 * 265.02999 * 3 2 1 5 5 C 1.34666 * 106.81597 * 180.23772 * 4 3 2 6 6 N 1.34129 * 108.02165 * 359.60606 * 5 4 3 7 7 C 1.30498 * 109.25671 * 0.40230 * 6 5 4 8 8 C 1.50696 * 125.65003 * 179.77584 * 7 6 5 9 9 N 1.46499 * 109.46962 * 269.97260 * 8 7 6 10 10 C 1.34776 * 120.00146 * 180.02562 * 9 8 7 11 11 O 1.21445 * 120.00080 * 359.97438 * 10 9 8 12 12 C 1.48834 * 120.00363 * 180.02562 * 10 9 8 13 13 O 1.21494 * 119.99791 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99945 * 179.97438 * 12 10 9 15 15 C 1.36118 * 119.99760 * 180.02562 * 14 12 10 16 16 H 1.08007 * 120.00299 * 359.97438 * 15 14 12 17 17 C 1.39589 * 120.00049 * 179.97438 * 15 14 12 18 18 N 1.31012 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00123 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47087 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47326 * 120.00000 * 19 17 15 22 22 H 1.48500 * 109.47410 * 239.99903 * 19 17 15 23 23 H 1.09001 * 109.47324 * 300.00335 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99749 * 1 2 3 25 25 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47534 * 240.00174 * 2 1 3 27 27 H 1.09008 * 109.47437 * 119.99631 * 2 1 3 28 28 H 1.08002 * 126.58785 * 359.96564 * 4 3 2 29 29 H 1.08003 * 125.98708 * 179.75770 * 5 4 3 30 30 H 1.08996 * 109.47237 * 29.97295 * 8 7 6 31 31 H 1.09004 * 109.47461 * 149.97686 * 8 7 6 32 32 H 0.97003 * 120.00150 * 0.02562 * 9 8 7 33 33 H 0.96996 * 120.00506 * 0.02562 * 14 12 10 34 34 H 0.97001 * 120.00374 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3792 2.1152 -1.0976 5 6 2.7703 3.3226 -0.6475 6 7 2.6434 3.3288 0.6878 7 6 2.1965 2.1681 1.0830 8 6 1.9240 1.7718 2.5111 9 7 3.1329 1.1843 3.0940 10 6 3.1244 0.7535 4.3710 11 8 2.1149 0.8528 5.0387 12 6 4.3527 0.1572 4.9634 13 8 5.3631 0.0591 4.2959 14 7 4.3443 -0.2732 6.2406 15 6 5.4678 -0.8181 6.7825 16 1 6.3658 -0.9060 6.1889 17 6 5.4593 -1.2633 8.1054 18 7 4.3699 -1.1571 8.8254 19 14 7.0009 -2.0118 8.8489 20 1 8.0865 -2.0178 7.8356 21 1 7.4249 -1.2076 10.0231 22 1 6.7171 -3.4044 9.2793 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.3586 1.7873 -2.1264 29 1 3.1220 4.1431 -1.2554 30 1 1.6358 2.6531 3.0841 31 1 1.1158 1.0409 2.5375 32 1 3.9394 1.1054 2.5608 33 1 3.5378 -0.1946 6.7736 34 1 4.3639 -1.4668 9.7446 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385217619.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:30 Heat of formation + Delta-G solvation = -35.684335 kcal Electronic energy + Delta-G solvation = -19514.693246 eV Core-core repulsion = 16254.787401 eV Total energy + Delta-G solvation = -3259.905844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.18638 -41.27648 -39.17433 -36.63665 -36.00362 -35.75233 -33.47298 -31.55548 -30.92612 -28.30970 -27.17446 -24.77475 -24.18492 -22.37225 -21.43334 -20.86952 -20.32881 -18.96198 -17.93484 -17.76290 -16.90233 -16.80167 -16.32848 -15.92088 -15.84442 -15.71367 -15.12805 -14.76363 -14.65671 -14.47469 -13.88775 -13.70069 -13.67877 -13.52352 -12.97789 -12.93959 -12.58169 -12.36804 -12.27364 -12.08135 -11.68395 -11.01314 -10.67638 -10.38372 -10.33743 -10.27777 -9.45595 -8.66719 -6.11435 0.55456 0.81833 1.42269 1.46042 1.57519 1.69372 1.82479 2.18666 2.34060 2.36639 3.14197 3.18964 3.25973 3.70509 3.79137 3.99899 4.03962 4.22783 4.34289 4.38970 4.50773 4.69086 4.79805 4.81141 5.09042 5.17458 5.25220 5.30144 5.66593 5.78809 6.04456 6.14708 6.33124 6.75269 6.95437 7.05889 7.26202 7.78813 8.49176 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.003764 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.600835 B = 7437.186382 C = 7604.960604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 N -0.441 5.441 4 C -0.027 4.027 5 C -0.057 4.057 6 N -0.510 5.510 7 C 0.164 3.836 8 C 0.212 3.788 9 N -0.691 5.691 10 C 0.526 3.474 11 O -0.559 6.559 12 C 0.390 3.610 13 O -0.618 6.618 14 N -0.507 5.507 15 C -0.345 4.345 16 H 0.098 0.902 17 C -0.003 4.003 18 N -0.894 5.894 19 Si 1.010 2.990 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.264 1.264 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.218 0.782 29 H 0.190 0.810 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.413 0.587 33 H 0.402 0.598 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 0.830 -18.152 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.033 4.033 3 N -0.124 5.124 4 C -0.162 4.162 5 C -0.205 4.205 6 N -0.230 5.230 7 C -0.097 4.097 8 C 0.088 3.912 9 N -0.345 5.345 10 C 0.309 3.691 11 O -0.437 6.437 12 C 0.174 3.826 13 O -0.508 6.508 14 N -0.141 5.141 15 C -0.475 4.475 16 H 0.116 0.884 17 C -0.207 4.207 18 N -0.531 5.531 19 Si 0.831 3.169 20 H -0.188 1.188 21 H -0.191 1.191 22 H -0.189 1.189 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.142 0.858 27 H 0.104 0.896 28 H 0.234 0.766 29 H 0.207 0.793 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.249 0.751 33 H 0.237 0.763 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.417 1.293 -17.393 18.952 hybrid contribution 0.312 -0.676 0.028 0.745 sum -7.105 0.616 -17.364 18.771 Atomic orbital electron populations 1.22139 0.92760 1.04479 1.02822 1.22230 0.96716 0.78303 1.06098 1.45726 1.46990 1.13368 1.06289 1.23413 1.05668 0.93112 0.93988 1.22830 1.07924 0.99417 0.90373 1.70189 1.17906 1.20640 1.14257 1.22690 1.07799 0.88495 0.90749 1.19478 0.87042 0.99486 0.85164 1.45603 1.15936 1.61033 1.11941 1.20018 0.88107 0.78485 0.82516 1.90695 1.34676 1.57078 1.61286 1.19498 0.89368 0.89391 0.84298 1.90556 1.35036 1.63733 1.61497 1.41639 1.14242 1.48184 1.10054 1.20023 0.92316 1.38293 0.96838 0.88370 1.26531 1.02251 0.96285 0.95680 1.69547 1.29449 1.43398 1.10717 0.84643 0.76202 0.78058 0.78021 1.18850 1.19133 1.18907 0.93113 0.91122 0.88542 0.85762 0.89644 0.76589 0.79299 0.89171 0.88377 0.75091 0.76349 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.24 71.98 0.74 -1.12 16 2 C 0.09 1.19 6.40 86.38 0.55 1.74 16 3 N -0.44 -8.67 2.75 -514.28 -1.42 -10.08 16 4 C -0.03 -0.45 11.58 83.09 0.96 0.51 16 5 C -0.06 -1.26 11.87 83.52 0.99 -0.27 16 6 N -0.51 -15.17 11.25 -188.13 -2.12 -17.29 16 7 C 0.16 4.39 7.27 138.13 1.00 5.39 16 8 C 0.21 6.16 5.82 85.63 0.50 6.66 16 9 N -0.69 -24.37 5.54 -468.74 -2.60 -26.96 16 10 C 0.53 22.96 7.87 87.08 0.69 23.64 16 11 O -0.56 -25.85 16.47 -3.54 -0.06 -25.91 16 12 C 0.39 20.08 7.82 87.08 0.68 20.76 16 13 O -0.62 -34.09 16.03 -3.70 -0.06 -34.15 16 14 N -0.51 -27.79 5.25 -308.88 -1.62 -29.41 16 15 C -0.34 -19.38 9.67 84.35 0.82 -18.56 16 16 H 0.10 5.70 7.15 -2.91 -0.02 5.67 16 17 C 0.00 -0.15 5.51 85.14 0.47 0.32 16 18 N -0.89 -47.62 13.03 21.77 0.28 -47.34 16 19 Si 1.01 40.53 29.56 68.60 2.03 42.56 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H 0.05 0.74 7.67 -2.39 -0.02 0.73 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.40 7.92 -2.38 -0.02 1.38 16 28 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.10 2.51 7.36 -2.38 -0.02 2.49 16 32 H 0.41 14.63 7.92 -92.71 -0.73 13.89 16 33 H 0.40 22.12 7.35 -92.71 -0.68 21.43 16 34 H 0.29 14.06 8.30 -92.71 -0.77 13.29 16 Total: -1.00 -71.00 307.58 1.58 -69.42 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -0.26 Total: 40.09 kcal Atomic # 6 Polarization: 31.67 SS G_CDS: 7.40 Total: 39.07 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -7.47 Total: -131.08 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -0.12 Total: -60.06 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -71.00 1.58 -69.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385217619.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.734 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds