Wall clock time and date at job start Mon Mar 30 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47471 * 269.97777 * 6 5 4 8 8 C 1.34776 * 120.00145 * 180.02562 * 7 6 5 9 9 O 1.21434 * 120.00073 * 0.02562 * 8 7 6 10 10 C 1.48835 * 119.99820 * 179.97438 * 8 7 6 11 11 O 1.21499 * 120.00169 * 0.02562 * 10 8 7 12 12 N 1.34776 * 119.99820 * 180.02562 * 10 8 7 13 13 C 1.36117 * 120.00183 * 180.02562 * 12 10 8 14 14 H 1.08001 * 120.00128 * 359.97438 * 13 12 10 15 15 C 1.39591 * 120.00278 * 179.97438 * 13 12 10 16 16 N 1.31011 * 119.99844 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00030 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46912 * 89.99986 * 17 15 13 19 19 H 1.48496 * 109.47167 * 210.00009 * 17 15 13 20 20 H 1.48498 * 109.47208 * 330.00173 * 17 15 13 21 21 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 22 22 N 1.30844 * 108.19764 * 359.97438 * 21 5 4 23 23 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 24 24 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 27 27 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 28 28 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 30 30 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 31 31 H 0.97003 * 119.99917 * 359.97438 * 7 6 5 32 32 H 0.97003 * 119.99938 * 359.97438 * 12 10 8 33 33 H 0.97000 * 120.00234 * 179.97438 * 16 15 13 34 34 H 1.07995 * 125.89923 * 180.25722 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1752 4.8974 2.2903 8 6 3.7618 5.8322 3.0639 9 8 4.9371 6.0964 2.9111 10 6 2.9687 6.5415 4.1046 11 8 1.7926 6.2775 4.2571 12 7 3.5552 7.4768 4.8777 13 6 2.8301 8.1252 5.8299 14 1 1.7846 7.8905 5.9655 15 6 3.4377 9.0934 6.6311 16 7 4.7060 9.3778 6.4669 17 14 2.4423 9.9837 7.9372 18 1 2.5205 9.2332 9.2162 19 1 2.9900 11.3503 8.1310 20 1 1.0252 10.0753 7.5029 21 6 2.3129 3.4723 -0.6000 22 7 1.6811 2.3745 -0.9282 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.3184 1.4127 1.7364 29 1 4.7828 3.6692 1.7373 30 1 4.3482 4.9239 0.5519 31 1 2.2360 4.6871 2.4116 32 1 4.4943 7.6873 4.7562 33 1 5.1281 10.0509 7.0234 34 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390393443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:27 Heat of formation + Delta-G solvation = 2.323593 kcal Electronic energy + Delta-G solvation = -19046.580162 eV Core-core repulsion = 15788.322465 eV Total energy + Delta-G solvation = -3258.257697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -41.38896 -39.33612 -37.17156 -35.24151 -34.40398 -33.76041 -31.38701 -30.66367 -30.01377 -26.45240 -25.27260 -23.95709 -22.36749 -20.90396 -20.31574 -19.36725 -18.30300 -17.38873 -16.64783 -15.92279 -15.57438 -14.96166 -14.95052 -14.55127 -14.36365 -13.93686 -13.86714 -13.50920 -13.20032 -12.76834 -12.68176 -12.42016 -12.31184 -11.88522 -11.74743 -11.68668 -11.17499 -10.68084 -10.51892 -10.40881 -10.32344 -9.68856 -9.57575 -8.74197 -8.65092 -8.18955 -8.15746 -6.63792 -3.96123 1.70912 2.30274 2.51038 2.55005 3.17142 3.18407 3.24320 3.71532 4.12114 4.18943 4.33288 4.59544 4.66286 4.80947 4.86268 5.07293 5.18425 5.20396 5.25310 5.36497 5.44881 5.64056 5.78355 5.87914 6.10253 6.12403 6.49674 6.81511 6.86687 7.34145 7.54337 7.75089 7.95931 8.37647 8.68604 9.00195 9.36106 9.89358 10.51229 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038250 B = 0.003333 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.843903 B = 8398.438973 C = 8846.412181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.076 3.924 5 C -0.255 4.255 6 C 0.200 3.800 7 N -0.711 5.711 8 C 0.512 3.488 9 O -0.548 6.548 10 C 0.395 3.605 11 O -0.598 6.598 12 N -0.501 5.501 13 C -0.306 4.306 14 H 0.112 0.888 15 C 0.030 3.970 16 N -0.870 5.870 17 Si 0.938 3.062 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.265 1.265 21 C 0.066 3.934 22 N -0.297 5.297 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.176 0.824 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.409 0.591 32 H 0.405 0.595 33 H 0.280 0.720 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 -15.882 -10.774 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 N -0.156 5.156 4 C -0.072 4.072 5 C -0.267 4.267 6 C 0.076 3.924 7 N -0.365 5.365 8 C 0.297 3.703 9 O -0.426 6.426 10 C 0.180 3.820 11 O -0.486 6.486 12 N -0.135 5.135 13 C -0.437 4.437 14 H 0.130 0.870 15 C -0.176 4.176 16 N -0.508 5.508 17 Si 0.764 3.236 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.121 4.121 22 N -0.118 5.118 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.193 0.807 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.245 0.755 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.775 -16.448 -11.537 20.443 hybrid contribution 0.325 0.787 1.195 1.467 sum -3.450 -15.661 -10.343 19.082 Atomic orbital electron populations 1.22061 0.93683 1.02838 1.03828 1.21690 0.96216 0.77426 1.03707 1.48717 1.35386 1.10260 1.21218 1.22458 0.94529 0.94662 0.95507 1.20107 1.09649 0.95087 1.01839 1.19395 0.91661 0.92172 0.89190 1.45849 1.15003 1.39808 1.35851 1.20669 0.87265 0.79973 0.82440 1.90686 1.16580 1.65097 1.70198 1.19015 0.88173 0.87265 0.87592 1.90579 1.15997 1.68955 1.73108 1.41562 1.13452 1.30315 1.28181 1.19872 0.96645 1.16604 1.10537 0.87038 1.25574 0.95968 0.97174 0.98898 1.69483 1.10684 1.31559 1.39088 0.85730 0.79778 0.78211 0.79889 1.19946 1.20543 1.18923 1.23875 0.94824 0.97432 0.95994 1.77333 1.23700 0.96985 1.13764 0.91840 0.91072 0.90739 0.89851 0.88607 0.80727 0.91147 0.90788 0.75490 0.75989 0.90965 0.79839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.10 37.16 0.38 -0.74 16 2 C 0.13 0.87 7.23 -4.04 -0.03 0.84 16 3 N -0.37 -3.89 3.68 -61.37 -0.23 -4.12 16 4 C 0.08 0.79 11.36 -17.22 -0.20 0.59 16 5 C -0.25 -3.05 5.47 -105.05 -0.57 -3.63 16 6 C 0.20 2.75 6.15 -5.20 -0.03 2.72 16 7 N -0.71 -12.24 5.54 -62.11 -0.34 -12.59 16 8 C 0.51 11.15 7.87 -11.87 -0.09 11.06 16 9 O -0.55 -12.81 16.47 5.42 0.09 -12.72 16 10 C 0.40 10.04 7.82 -11.87 -0.09 9.95 16 11 O -0.60 -16.20 16.03 5.37 0.09 -16.11 16 12 N -0.50 -13.50 5.25 -11.59 -0.06 -13.56 16 13 C -0.31 -8.49 9.67 -15.15 -0.15 -8.64 16 14 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 15 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 16 N -0.87 -23.45 13.03 55.53 0.72 -22.73 16 17 Si 0.94 20.20 29.56 -169.99 -5.02 15.17 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 C 0.07 0.79 11.96 -17.36 -0.21 0.58 16 22 N -0.30 -3.74 12.42 30.62 0.38 -3.36 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.41 8.07 -51.93 -0.42 -0.01 16 28 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.41 6.96 7.92 -40.82 -0.32 6.63 16 32 H 0.40 10.97 7.35 -40.82 -0.30 10.67 16 33 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 34 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -32.93 310.18 -4.73 -37.66 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -3.93 Total: 14.24 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -1.09 Total: 13.44 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.47 Total: -56.34 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: 0.18 Total: -28.83 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.93 -4.73 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390393443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.981 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds