Wall clock time and date at job start Mon Mar 30 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47471 * 269.97777 * 6 5 4 8 8 C 1.34776 * 120.00145 * 180.02562 * 7 6 5 9 9 O 1.21434 * 120.00073 * 0.02562 * 8 7 6 10 10 C 1.48835 * 119.99820 * 179.97438 * 8 7 6 11 11 O 1.21499 * 120.00169 * 0.02562 * 10 8 7 12 12 N 1.34776 * 119.99820 * 180.02562 * 10 8 7 13 13 C 1.36117 * 120.00183 * 180.02562 * 12 10 8 14 14 H 1.08001 * 120.00128 * 359.97438 * 13 12 10 15 15 C 1.39591 * 120.00278 * 179.97438 * 13 12 10 16 16 N 1.31011 * 119.99844 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00030 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46912 * 89.99986 * 17 15 13 19 19 H 1.48496 * 109.47167 * 210.00009 * 17 15 13 20 20 H 1.48498 * 109.47208 * 330.00173 * 17 15 13 21 21 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 22 22 N 1.30844 * 108.19764 * 359.97438 * 21 5 4 23 23 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 24 24 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 27 27 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 28 28 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 30 30 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 31 31 H 0.97003 * 119.99917 * 359.97438 * 7 6 5 32 32 H 0.97003 * 119.99938 * 359.97438 * 12 10 8 33 33 H 0.97000 * 120.00234 * 179.97438 * 16 15 13 34 34 H 1.07995 * 125.89923 * 180.25722 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1752 4.8974 2.2903 8 6 3.7618 5.8322 3.0639 9 8 4.9371 6.0964 2.9111 10 6 2.9687 6.5415 4.1046 11 8 1.7926 6.2775 4.2571 12 7 3.5552 7.4768 4.8777 13 6 2.8301 8.1252 5.8299 14 1 1.7846 7.8905 5.9655 15 6 3.4377 9.0934 6.6311 16 7 4.7060 9.3778 6.4669 17 14 2.4423 9.9837 7.9372 18 1 2.5205 9.2332 9.2162 19 1 2.9900 11.3503 8.1310 20 1 1.0252 10.0753 7.5029 21 6 2.3129 3.4723 -0.6000 22 7 1.6811 2.3745 -0.9282 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.3184 1.4127 1.7364 29 1 4.7828 3.6692 1.7373 30 1 4.3482 4.9239 0.5519 31 1 2.2360 4.6871 2.4116 32 1 4.4943 7.6873 4.7562 33 1 5.1281 10.0509 7.0234 34 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390393443.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:23 Heat of formation + Delta-G solvation = -22.847998 kcal Electronic energy + Delta-G solvation = -19047.671684 eV Core-core repulsion = 15788.322465 eV Total energy + Delta-G solvation = -3259.349219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -42.25115 -41.13950 -39.07942 -36.61745 -35.99711 -34.97851 -33.42306 -31.66594 -30.88338 -28.09079 -26.77403 -24.73683 -24.01600 -21.69071 -21.32695 -21.04536 -20.31830 -18.87304 -17.76598 -17.59872 -16.78229 -16.60324 -16.34466 -15.93249 -15.70203 -15.34589 -15.00632 -14.79043 -14.50546 -14.07500 -13.99524 -13.65052 -13.33195 -13.01313 -12.95532 -12.89525 -12.55201 -12.32698 -12.22880 -12.09187 -11.64281 -11.54796 -10.41408 -10.27344 -10.24958 -10.11126 -9.48633 -8.63355 -6.08301 0.66376 0.87341 1.41576 1.48731 1.50268 1.59292 1.62201 2.14294 2.39676 2.42518 3.18543 3.41622 3.52012 3.93513 4.06080 4.09066 4.12090 4.20819 4.35959 4.45397 4.67096 4.76137 4.82946 4.95285 5.13854 5.23247 5.27544 5.37358 5.62369 5.71667 6.09276 6.22878 6.44836 6.68932 6.85238 7.07389 7.32436 7.84038 8.52526 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038250 B = 0.003333 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.843903 B = 8398.438973 C = 8846.412181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.372 5.372 4 C 0.087 3.913 5 C -0.274 4.274 6 C 0.204 3.796 7 N -0.688 5.688 8 C 0.519 3.481 9 O -0.566 6.566 10 C 0.390 3.610 11 O -0.619 6.619 12 N -0.512 5.512 13 C -0.346 4.346 14 H 0.098 0.902 15 C -0.005 4.005 16 N -0.897 5.897 17 Si 1.009 2.991 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.265 1.265 21 C 0.057 3.943 22 N -0.325 5.325 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.127 0.873 28 H 0.206 0.794 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.412 0.588 32 H 0.401 0.599 33 H 0.289 0.711 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 -17.130 -10.514 20.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.001 3.999 3 N -0.154 5.154 4 C -0.062 4.062 5 C -0.286 4.286 6 C 0.081 3.919 7 N -0.341 5.341 8 C 0.302 3.698 9 O -0.446 6.446 10 C 0.175 3.825 11 O -0.508 6.508 12 N -0.146 5.146 13 C -0.476 4.476 14 H 0.115 0.885 15 C -0.209 4.209 16 N -0.534 5.534 17 Si 0.830 3.170 18 H -0.189 1.189 19 H -0.191 1.191 20 H -0.189 1.189 21 C -0.129 4.129 22 N -0.147 5.147 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.223 0.777 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.248 0.752 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.950 -17.739 -11.320 21.411 hybrid contribution 0.354 1.024 1.015 1.485 sum -3.596 -16.714 -10.305 19.962 Atomic orbital electron populations 1.22025 0.93865 1.04004 1.02072 1.22090 0.96094 0.75827 1.05861 1.49066 1.34790 1.11079 1.20434 1.22923 0.93434 0.94225 0.95597 1.19951 1.10741 0.95556 1.02349 1.19519 0.91774 0.92381 0.88242 1.45881 1.15211 1.37974 1.35006 1.19996 0.86645 0.80781 0.82404 1.90680 1.16983 1.66071 1.70837 1.19721 0.88259 0.86728 0.87765 1.90546 1.17039 1.69451 1.73808 1.41652 1.13231 1.31017 1.28732 1.19963 0.96502 1.18666 1.12433 0.88453 1.26522 0.97007 0.97017 1.00358 1.69548 1.11972 1.31977 1.39949 0.84706 0.78032 0.77311 0.76935 1.18926 1.19146 1.18876 1.24131 0.94646 0.97916 0.96207 1.77296 1.24567 0.97708 1.15095 0.93223 0.93094 0.88142 0.88637 0.85528 0.77738 0.90193 0.90650 0.75181 0.76428 0.90134 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.10 71.98 0.73 -1.16 16 2 C 0.12 1.29 7.23 86.38 0.62 1.91 16 3 N -0.37 -6.98 3.68 -348.07 -1.28 -8.26 16 4 C 0.09 1.58 11.36 83.54 0.95 2.53 16 5 C -0.27 -6.11 5.47 -20.14 -0.11 -6.22 16 6 C 0.20 5.30 6.15 85.63 0.53 5.83 16 7 N -0.69 -23.07 5.54 -468.74 -2.60 -25.67 16 8 C 0.52 22.53 7.87 87.08 0.69 23.22 16 9 O -0.57 -26.38 16.47 -3.51 -0.06 -26.44 16 10 C 0.39 20.14 7.82 87.08 0.68 20.82 16 11 O -0.62 -34.00 16.03 -3.71 -0.06 -34.06 16 12 N -0.51 -28.30 5.25 -308.87 -1.62 -29.92 16 13 C -0.35 -19.60 9.67 84.36 0.82 -18.79 16 14 H 0.10 5.67 7.15 -2.91 -0.02 5.65 16 15 C 0.00 -0.26 5.51 85.14 0.47 0.21 16 16 N -0.90 -48.42 13.03 21.77 0.28 -48.14 16 17 Si 1.01 40.97 29.56 68.60 2.03 42.99 16 18 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 C 0.06 1.32 11.96 85.23 1.02 2.34 16 22 N -0.33 -7.86 12.42 -57.02 -0.71 -8.57 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.13 0.59 8.07 -2.39 -0.02 0.57 16 28 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.41 13.63 7.92 -92.71 -0.73 12.89 16 32 H 0.40 22.34 7.35 -92.71 -0.68 21.66 16 33 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 34 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -71.34 310.18 2.11 -69.23 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.27 Total: 38.13 kcal Atomic # 6 Polarization: 24.31 SS G_CDS: 6.39 Total: 30.70 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -5.92 Total: -120.56 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.12 Total: -60.50 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -71.34 2.11 -69.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390393443.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.385 kcal (2) G-P(sol) polarization free energy of solvation -71.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds