Wall clock time and date at job start Mon Mar 30 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46755 * 2 1 4 4 C 1.46891 * 111.00463 * 68.65286 * 3 2 1 5 5 C 1.50703 * 109.47052 * 71.54789 * 4 3 2 6 6 H 1.07993 * 120.00259 * 5.03700 * 5 4 3 7 7 C 1.37878 * 119.99592 * 185.03479 * 5 4 3 8 8 N 1.31509 * 120.00494 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99661 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46911 * 60.00215 * 9 7 5 11 11 H 1.48495 * 109.47162 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47211 * 300.00251 * 9 7 5 13 13 C 1.39040 * 110.99877 * 304.69201 * 3 2 1 14 14 N 1.32550 * 119.65902 * 104.35470 * 13 3 2 15 15 C 1.32058 * 121.80484 * 179.97438 * 14 13 3 16 16 C 1.37775 * 120.93044 * 0.02562 * 15 14 13 17 17 C 1.39650 * 119.23186 * 359.72560 * 16 15 14 18 18 N 1.39199 * 120.82281 * 180.27368 * 17 16 15 19 19 C 1.38783 * 119.67216 * 284.33682 * 13 3 2 20 20 N 1.48025 * 120.49178 * 0.02562 * 19 13 3 21 21 O 1.21798 * 119.99865 * 92.32097 * 20 19 13 22 22 O 1.21800 * 119.99909 * 272.04221 * 20 19 13 23 23 H 1.08999 * 109.46589 * 183.76084 * 1 2 3 24 24 H 1.08996 * 109.46836 * 303.75759 * 1 2 3 25 25 H 1.08995 * 109.47406 * 63.75907 * 1 2 3 26 26 H 1.09002 * 109.47092 * 239.99856 * 2 1 3 27 27 H 1.08998 * 109.47344 * 119.99619 * 2 1 3 28 28 H 1.08996 * 109.47529 * 191.55169 * 4 3 2 29 29 H 1.09002 * 109.47023 * 311.55258 * 4 3 2 30 30 H 0.97000 * 120.00421 * 179.97438 * 8 7 5 31 31 H 1.08002 * 119.53740 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.38246 * 179.97438 * 16 15 14 33 33 H 0.97000 * 119.99815 * 180.26592 * 18 17 16 34 34 H 0.97002 * 120.00593 * 0.26750 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7245 2.0478 1.2772 5 6 2.6118 1.4798 2.3548 6 1 3.3789 0.7634 2.1006 7 6 2.4443 1.8749 3.6650 8 7 1.5099 2.7470 3.9746 9 14 3.5447 1.1714 5.0006 10 1 4.9605 1.5066 4.7030 11 1 3.1634 1.7521 6.3131 12 1 3.3848 -0.3042 5.0476 13 6 1.4891 2.1010 -1.0673 14 7 0.5176 2.9765 -0.8515 15 6 -0.0166 3.6795 -1.8336 16 6 0.4195 3.5278 -3.1317 17 6 1.4450 2.6201 -3.4049 18 7 1.9149 2.4446 -4.7033 19 6 1.9823 1.8921 -2.3476 20 7 3.0673 0.9133 -2.5841 21 8 2.7961 -0.2377 -2.8756 22 8 4.2312 1.2603 -2.4922 23 1 -0.3632 -1.0255 0.0674 24 1 -0.3633 0.5710 0.8544 25 1 -0.3634 0.4543 -0.9217 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.9078 3.1180 1.1822 29 1 0.6802 1.8801 1.5408 30 1 1.3918 3.0246 4.8965 31 1 -0.8064 4.3833 -1.6161 32 1 -0.0240 4.1070 -3.9281 33 1 2.6252 1.8081 -4.8801 34 1 1.5322 2.9588 -5.4314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393889904.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:22 Heat of formation + Delta-G solvation = 48.903788 kcal Electronic energy + Delta-G solvation = -20884.579286 eV Core-core repulsion = 17628.341458 eV Total energy + Delta-G solvation = -3256.237828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.97099 -40.27882 -37.54012 -36.10829 -35.35620 -32.75886 -31.40187 -30.42854 -29.28548 -26.96213 -25.99924 -23.50007 -23.13728 -22.28385 -20.38032 -19.02086 -18.43169 -18.29101 -17.33442 -16.37462 -16.23551 -15.54584 -15.43028 -14.81023 -14.54690 -14.32447 -13.69157 -13.54269 -12.77530 -12.55835 -12.04193 -11.84028 -11.44770 -11.31636 -11.20797 -10.96659 -10.83927 -10.81995 -10.62657 -10.27986 -10.11845 -9.67770 -9.46365 -9.23617 -8.61068 -8.42892 -7.75952 -6.06618 -4.09925 0.83058 0.91889 1.27222 1.77386 3.13680 3.33300 3.36855 3.40648 3.59833 4.01396 4.43761 4.48113 4.76236 4.97436 5.10523 5.28606 5.50226 5.54606 5.55660 5.69085 5.89671 6.10016 6.23160 6.45556 6.55139 6.65471 6.76867 7.01890 7.08876 7.28673 7.60846 7.73252 7.97943 7.98487 8.09688 8.35794 8.96373 9.53860 11.03350 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.006423 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.781033 B = 4358.106654 C = 4831.364217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.056 3.944 3 N -0.488 5.488 4 C 0.202 3.798 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.900 3.100 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.422 3.578 14 N -0.523 5.523 15 C 0.190 3.810 16 C -0.281 4.281 17 C 0.310 3.690 18 N -0.857 5.857 19 C -0.178 4.178 20 N 0.046 4.954 21 O -0.163 6.163 22 O -0.133 6.133 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.036 0.964 29 H 0.027 0.973 30 H 0.263 0.737 31 H 0.168 0.832 32 H 0.146 0.854 33 H 0.402 0.598 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.099 0.356 -16.049 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.069 4.069 3 N -0.205 5.205 4 C 0.079 3.921 5 C -0.559 4.559 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.189 3.811 14 N -0.240 5.240 15 C 0.032 3.968 16 C -0.308 4.308 17 C 0.193 3.807 18 N -0.395 5.395 19 C -0.270 4.270 20 N 0.574 4.426 21 O -0.380 6.380 22 O -0.360 6.360 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.185 0.815 32 H 0.163 0.837 33 H 0.231 0.769 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.535 0.968 -14.870 15.576 hybrid contribution 0.556 -0.482 -0.423 0.849 sum -3.979 0.486 -15.293 15.809 Atomic orbital electron populations 1.22363 0.97068 1.02099 1.02170 1.22298 0.93703 0.86792 1.04079 1.59945 1.51547 1.03538 1.05461 1.19841 0.97165 0.94314 0.80821 1.21091 1.17452 1.26111 0.91225 0.91862 1.24937 0.95531 0.95105 0.98540 1.69958 1.32319 1.31722 1.19074 0.86526 0.80968 0.79257 0.80495 1.20058 1.21260 1.20144 1.19716 0.84314 0.89259 0.87855 1.68512 1.10056 1.10817 1.34633 1.22732 0.94575 0.92198 0.87300 1.21399 1.03270 1.06285 0.99864 1.17342 0.89950 0.89742 0.83667 1.42420 1.43468 1.48117 1.05528 1.20985 1.03116 1.06759 0.96131 1.43044 1.01655 1.01020 0.96855 1.94474 1.89708 1.04065 1.49783 1.94541 1.04070 1.84296 1.53052 0.92127 0.90691 0.93981 0.91127 0.87904 0.94596 0.95500 0.92721 0.81520 0.83669 0.76891 0.75862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 9.30 37.16 0.35 -2.92 16 2 C 0.06 1.14 5.78 -3.82 -0.02 1.12 16 3 N -0.49 -11.11 4.40 -174.62 -0.77 -11.87 16 4 C 0.20 5.31 3.83 -4.98 -0.02 5.29 16 5 C -0.52 -14.69 8.39 -34.44 -0.29 -14.98 16 6 H 0.06 1.79 7.69 -52.49 -0.40 1.38 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.42 8.50 4.40 -154.99 -0.68 7.82 16 14 N -0.52 -9.84 8.75 -12.53 -0.11 -9.95 16 15 C 0.19 2.60 11.16 -17.62 -0.20 2.40 16 16 C -0.28 -3.24 9.99 -39.22 -0.39 -3.63 16 17 C 0.31 4.20 6.81 -83.65 -0.57 3.63 16 18 N -0.86 -8.40 9.07 32.51 0.29 -8.11 16 19 C -0.18 -3.15 6.04 -79.40 -0.48 -3.63 16 20 N 0.05 0.85 2.91 34.23 0.10 0.95 16 21 O -0.16 -2.97 17.33 -29.46 -0.51 -3.49 16 22 O -0.13 -2.61 19.26 -29.46 -0.57 -3.18 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 1.53 6.30 -51.93 -0.33 1.21 16 25 H 0.04 0.74 7.18 -51.93 -0.37 0.37 16 26 H 0.07 1.37 5.63 -51.93 -0.29 1.08 16 27 H 0.10 2.20 7.19 -51.93 -0.37 1.82 16 28 H 0.04 1.04 7.70 -51.93 -0.40 0.64 16 29 H 0.03 0.75 6.12 -51.93 -0.32 0.43 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 33 H 0.40 4.11 8.19 -40.82 -0.33 3.77 16 34 H 0.41 2.54 8.86 -40.82 -0.36 2.18 16 LS Contribution 294.46 15.07 4.44 4.44 Total: -1.00 -32.40 294.46 -7.40 -39.80 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.59 Total: 3.56 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.40 Total: -3.27 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.25 Total: -54.54 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -1.08 Total: -6.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.40 -7.40 -39.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393889904.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.700 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds