Wall clock time and date at job start Mon Mar 30 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46755 * 2 1 4 4 C 1.46891 * 111.00463 * 68.65286 * 3 2 1 5 5 C 1.50703 * 109.47052 * 71.54789 * 4 3 2 6 6 H 1.07993 * 120.00259 * 5.03700 * 5 4 3 7 7 C 1.37878 * 119.99592 * 185.03479 * 5 4 3 8 8 N 1.31509 * 120.00494 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99661 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46911 * 60.00215 * 9 7 5 11 11 H 1.48495 * 109.47162 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47211 * 300.00251 * 9 7 5 13 13 C 1.39040 * 110.99877 * 304.69201 * 3 2 1 14 14 N 1.32550 * 119.65902 * 104.35470 * 13 3 2 15 15 C 1.32058 * 121.80484 * 179.97438 * 14 13 3 16 16 C 1.37775 * 120.93044 * 0.02562 * 15 14 13 17 17 C 1.39650 * 119.23186 * 359.72560 * 16 15 14 18 18 N 1.39199 * 120.82281 * 180.27368 * 17 16 15 19 19 C 1.38783 * 119.67216 * 284.33682 * 13 3 2 20 20 N 1.48025 * 120.49178 * 0.02562 * 19 13 3 21 21 O 1.21798 * 119.99865 * 92.32097 * 20 19 13 22 22 O 1.21800 * 119.99909 * 272.04221 * 20 19 13 23 23 H 1.08999 * 109.46589 * 183.76084 * 1 2 3 24 24 H 1.08996 * 109.46836 * 303.75759 * 1 2 3 25 25 H 1.08995 * 109.47406 * 63.75907 * 1 2 3 26 26 H 1.09002 * 109.47092 * 239.99856 * 2 1 3 27 27 H 1.08998 * 109.47344 * 119.99619 * 2 1 3 28 28 H 1.08996 * 109.47529 * 191.55169 * 4 3 2 29 29 H 1.09002 * 109.47023 * 311.55258 * 4 3 2 30 30 H 0.97000 * 120.00421 * 179.97438 * 8 7 5 31 31 H 1.08002 * 119.53740 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.38246 * 179.97438 * 16 15 14 33 33 H 0.97000 * 119.99815 * 180.26592 * 18 17 16 34 34 H 0.97002 * 120.00593 * 0.26750 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7245 2.0478 1.2772 5 6 2.6118 1.4798 2.3548 6 1 3.3789 0.7634 2.1006 7 6 2.4443 1.8749 3.6650 8 7 1.5099 2.7470 3.9746 9 14 3.5447 1.1714 5.0006 10 1 4.9605 1.5066 4.7030 11 1 3.1634 1.7521 6.3131 12 1 3.3848 -0.3042 5.0476 13 6 1.4891 2.1010 -1.0673 14 7 0.5176 2.9765 -0.8515 15 6 -0.0166 3.6795 -1.8336 16 6 0.4195 3.5278 -3.1317 17 6 1.4450 2.6201 -3.4049 18 7 1.9149 2.4446 -4.7033 19 6 1.9823 1.8921 -2.3476 20 7 3.0673 0.9133 -2.5841 21 8 2.7961 -0.2377 -2.8756 22 8 4.2312 1.2603 -2.4922 23 1 -0.3632 -1.0255 0.0674 24 1 -0.3633 0.5710 0.8544 25 1 -0.3634 0.4543 -0.9217 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.9078 3.1180 1.1822 29 1 0.6802 1.8801 1.5408 30 1 1.3918 3.0246 4.8965 31 1 -0.8064 4.3833 -1.6161 32 1 -0.0240 4.1070 -3.9281 33 1 2.6252 1.8081 -4.8801 34 1 1.5322 2.9588 -5.4314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393889904.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:22 Heat of formation + Delta-G solvation = 25.534183 kcal Electronic energy + Delta-G solvation = -20885.592668 eV Core-core repulsion = 17628.341458 eV Total energy + Delta-G solvation = -3257.251210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.36595 -41.60718 -38.98843 -37.55941 -36.51438 -34.86193 -32.74487 -31.73804 -30.79016 -28.80606 -27.36798 -25.29374 -24.55641 -23.63995 -21.94954 -20.33475 -19.87067 -19.51920 -18.65604 -18.25507 -17.64985 -17.08942 -16.89822 -16.21410 -16.09131 -15.55165 -15.22046 -14.89148 -14.30966 -13.99517 -13.83670 -13.29672 -12.98103 -12.97307 -12.77678 -12.73199 -12.57306 -12.39699 -12.26668 -12.14480 -11.83400 -11.50679 -10.94607 -10.66691 -10.61651 -9.70187 -9.27025 -8.23809 -6.35720 -0.56725 -0.36767 0.12129 0.42320 1.39395 1.42621 1.50617 2.13764 2.37203 2.41237 2.71029 3.08411 3.36060 3.61740 3.66126 3.93721 4.01727 4.13509 4.36386 4.49542 4.59953 4.67412 4.80354 4.98744 5.10548 5.11845 5.27539 5.34308 5.56259 5.76383 5.84009 5.93036 6.35976 6.39711 6.50860 6.71895 6.90746 7.33050 8.86387 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.006423 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.781033 B = 4358.106654 C = 4831.364217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.057 3.943 3 N -0.507 5.507 4 C 0.231 3.769 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.393 3.607 14 N -0.563 5.563 15 C 0.179 3.821 16 C -0.248 4.248 17 C 0.311 3.689 18 N -0.835 5.835 19 C -0.196 4.196 20 N 0.050 4.950 21 O -0.147 6.147 22 O -0.174 6.174 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.000 1.000 29 H 0.005 0.995 30 H 0.267 0.733 31 H 0.204 0.796 32 H 0.200 0.800 33 H 0.403 0.597 34 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 0.600 -18.030 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.068 4.068 3 N -0.225 5.225 4 C 0.107 3.893 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.190 1.190 13 C 0.160 3.840 14 N -0.281 5.281 15 C 0.023 3.977 16 C -0.274 4.274 17 C 0.192 3.808 18 N -0.374 5.374 19 C -0.289 4.289 20 N 0.577 4.423 21 O -0.371 6.371 22 O -0.392 6.392 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.018 0.982 29 H 0.022 0.978 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.217 0.783 33 H 0.231 0.769 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.279 1.289 -16.926 17.777 hybrid contribution 0.674 -0.517 -0.017 0.850 sum -4.605 0.772 -16.942 17.574 Atomic orbital electron populations 1.22190 0.95562 1.03258 1.01117 1.22280 0.95003 0.86111 1.03409 1.59834 1.53608 1.04335 1.04707 1.19214 0.95294 0.92285 0.82537 1.21382 1.17743 1.26225 0.92450 0.92567 1.25817 0.96849 0.95243 1.00824 1.70076 1.33762 1.32772 1.19755 0.85458 0.78816 0.78949 0.77533 1.19760 1.20294 1.19048 1.19580 0.86110 0.90470 0.87816 1.68409 1.10777 1.11704 1.37239 1.23421 0.94885 0.91930 0.87420 1.21929 1.00918 1.04285 1.00278 1.17566 0.89999 0.89168 0.84061 1.42414 1.42696 1.47609 1.04659 1.21106 1.03247 1.07840 0.96670 1.43220 1.01743 1.01132 0.96217 1.94435 1.89655 1.04425 1.48579 1.94543 1.04952 1.84530 1.55126 0.89438 0.93498 0.93349 0.90236 0.89822 0.98229 0.97758 0.92431 0.77917 0.78285 0.76866 0.73343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.05 9.30 71.98 0.67 -5.38 16 2 C 0.06 2.39 5.78 86.30 0.50 2.89 16 3 N -0.51 -24.07 4.40 -706.38 -3.11 -27.18 16 4 C 0.23 12.86 3.83 85.56 0.33 13.19 16 5 C -0.54 -31.76 8.39 25.60 0.21 -31.54 16 6 H 0.06 3.30 7.69 -2.91 -0.02 3.28 16 7 C 0.01 0.70 5.46 84.66 0.46 1.16 16 8 N -0.92 -56.01 13.29 21.45 0.28 -55.72 16 9 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 C 0.39 16.10 4.40 132.92 0.58 16.68 16 14 N -0.56 -21.29 8.75 -193.55 -1.69 -22.98 16 15 C 0.18 4.46 11.16 84.55 0.94 5.40 16 16 C -0.25 -4.64 9.99 22.50 0.22 -4.41 16 17 C 0.31 7.53 6.81 38.53 0.26 7.79 16 18 N -0.83 -13.30 9.07 -51.06 -0.46 -13.77 16 19 C -0.20 -6.82 6.04 36.73 0.22 -6.60 16 20 N 0.05 1.85 2.91 -45.62 -0.13 1.72 16 21 O -0.15 -5.23 17.33 18.89 0.33 -4.90 16 22 O -0.17 -6.98 19.26 18.89 0.36 -6.62 16 23 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 24 H 0.05 2.00 6.30 -2.39 -0.02 1.98 16 25 H 0.05 1.70 7.18 -2.39 -0.02 1.69 16 26 H 0.08 3.14 5.63 -2.39 -0.01 3.13 16 27 H 0.08 3.75 7.19 -2.39 -0.02 3.73 16 28 H 0.00 -0.03 7.70 -2.39 -0.02 -0.04 16 29 H 0.00 0.27 6.12 -2.39 -0.01 0.25 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.40 7.09 8.19 -92.71 -0.76 6.33 16 34 H 0.43 3.23 8.86 -92.71 -0.82 2.41 16 Total: -1.00 -74.73 294.46 1.60 -73.13 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -0.41 Total: 9.92 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 4.41 Total: -0.82 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -5.11 Total: -117.93 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.69 Total: -11.52 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -74.73 1.60 -73.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393889904.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.661 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds