Wall clock time and date at job start Mon Mar 30 2020 05:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39872 * 126.03910 * 2 1 4 4 N 1.30842 * 108.19764 * 179.81755 * 3 2 1 5 5 N 1.40076 * 108.20657 * 0.44422 * 4 3 2 6 6 C 1.46509 * 126.03825 * 179.73880 * 5 4 3 7 7 C 1.34951 * 107.93039 * 359.71277 * 5 4 3 8 8 C 1.50693 * 126.13128 * 179.97438 * 7 5 4 9 9 N 1.46506 * 109.46806 * 90.02754 * 8 7 5 10 10 C 1.34780 * 119.99652 * 180.02562 * 9 8 7 11 11 O 1.21440 * 120.00105 * 359.97438 * 10 9 8 12 12 C 1.48828 * 119.99948 * 180.02562 * 10 9 8 13 13 O 1.21510 * 120.00047 * 0.02562 * 12 10 9 14 14 N 1.34773 * 120.00475 * 179.97438 * 12 10 9 15 15 C 1.36118 * 120.00499 * 180.02562 * 14 12 10 16 16 H 1.07998 * 119.99797 * 359.97438 * 15 14 12 17 17 C 1.39588 * 120.00247 * 180.02562 * 15 14 12 18 18 N 1.31010 * 119.99650 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99901 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47032 * 89.99606 * 19 17 15 21 21 H 1.48496 * 109.46716 * 209.99573 * 19 17 15 22 22 H 1.48502 * 109.47165 * 329.99578 * 19 17 15 23 23 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 26 26 H 1.07999 * 125.89879 * 0.02562 * 3 2 1 27 27 H 1.08993 * 109.47101 * 269.97372 * 6 5 4 28 28 H 1.09001 * 109.46460 * 29.97589 * 6 5 4 29 29 H 1.09002 * 109.46907 * 149.96893 * 6 5 4 30 30 H 1.08998 * 109.47404 * 210.02638 * 8 7 5 31 31 H 1.09005 * 109.47439 * 330.03098 * 8 7 5 32 32 H 0.96992 * 120.00332 * 0.02562 * 9 8 7 33 33 H 0.97000 * 119.99661 * 359.97438 * 14 12 10 34 34 H 0.97003 * 119.99944 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7301 0.0040 5 7 3.5844 -0.6706 -0.0037 6 6 4.7746 -1.5249 -0.0079 7 6 2.3031 -1.0942 -0.0060 8 6 1.8416 -2.5287 -0.0143 9 7 1.6917 -3.0015 1.3642 10 6 1.2863 -4.2645 1.6032 11 8 1.0448 -5.0104 0.6758 12 6 1.1335 -4.7446 3.0035 13 8 1.3737 -3.9978 3.9315 14 7 0.7276 -6.0073 3.2426 15 6 0.5873 -6.4463 4.5234 16 1 0.8016 -5.7828 5.3481 17 6 0.1674 -7.7543 4.7709 18 7 -0.0921 -8.5593 3.7703 19 14 -0.0244 -8.3569 6.5286 20 1 -1.4082 -8.0883 6.9957 21 1 0.2420 -9.8167 6.5831 22 1 0.9406 -7.6445 7.4041 23 1 -0.3633 -0.0056 1.0277 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 1.9951 2.1578 0.0004 27 1 5.0699 -1.7315 -1.0366 28 1 5.5886 -1.0163 0.5087 29 1 4.5507 -2.4624 0.5012 30 1 0.8833 -2.5991 -0.5288 31 1 2.5777 -3.1443 -0.5315 32 1 1.8842 -2.4056 2.1050 33 1 0.5347 -6.6031 2.5018 34 1 -0.3842 -9.4682 3.9423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394101370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:28 Heat of formation + Delta-G solvation = 2.230219 kcal Electronic energy + Delta-G solvation = -19557.184208 eV Core-core repulsion = 16298.922462 eV Total energy + Delta-G solvation = -3258.261746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49155 -39.48763 -37.28994 -35.02970 -34.12842 -33.80024 -31.76342 -31.37655 -28.78841 -26.75674 -25.63143 -25.05915 -22.55747 -20.99439 -19.87594 -19.33738 -18.38205 -17.26896 -16.29750 -16.18769 -15.49606 -15.16472 -14.91099 -14.50787 -14.19616 -13.99291 -13.80721 -13.41843 -13.15778 -12.94929 -12.80037 -12.41797 -12.33405 -12.12225 -11.82089 -11.79221 -11.22850 -10.70247 -10.61743 -10.49615 -10.41871 -9.76192 -9.49913 -8.92574 -8.48787 -8.27363 -8.26609 -6.71799 -4.03894 1.58371 2.34799 2.37131 2.61284 3.12040 3.13999 3.19373 3.47615 4.03578 4.21033 4.34363 4.42374 4.88608 4.97732 5.02142 5.11512 5.14723 5.20852 5.28596 5.41021 5.50081 5.74588 5.78811 5.99096 6.02151 6.11347 6.54873 6.56921 6.84454 7.26665 7.56335 7.59416 7.78839 8.25256 8.52180 8.90838 9.26249 9.79770 10.42882 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.035776 B = 0.003803 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.459206 B = 7361.475884 C = 7404.443800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.217 4.217 3 C 0.046 3.954 4 N -0.291 5.291 5 N -0.364 5.364 6 C 0.097 3.903 7 C 0.064 3.936 8 C 0.186 3.814 9 N -0.712 5.712 10 C 0.516 3.484 11 O -0.544 6.544 12 C 0.393 3.607 13 O -0.597 6.597 14 N -0.497 5.497 15 C -0.306 4.306 16 H 0.113 0.887 17 C 0.032 3.968 18 N -0.867 5.867 19 Si 0.939 3.061 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.265 1.265 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.184 0.816 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.412 0.588 33 H 0.405 0.595 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 12.144 -8.136 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.229 4.229 3 C -0.139 4.139 4 N -0.112 5.112 5 N -0.147 5.147 6 C -0.045 4.045 7 C -0.063 4.063 8 C 0.061 3.939 9 N -0.368 5.368 10 C 0.301 3.699 11 O -0.421 6.421 12 C 0.177 3.823 13 O -0.486 6.486 14 N -0.131 5.131 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.175 4.175 18 N -0.505 5.505 19 Si 0.765 3.235 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.201 0.799 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.240 0.760 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.130 12.130 -8.241 15.536 hybrid contribution -0.841 -0.615 0.596 1.200 sum 4.289 11.515 -7.645 14.472 Atomic orbital electron populations 1.20138 0.88967 1.02187 1.02150 1.19971 0.97224 0.91170 1.14566 1.23764 0.89849 0.99769 1.00544 1.77337 1.21320 0.88450 1.24088 1.48411 1.05116 1.04661 1.56493 1.21930 0.85459 0.93581 1.03484 1.20787 0.84994 0.96166 1.04357 1.19684 1.02283 0.86736 0.85196 1.45689 1.69573 1.13857 1.07637 1.20748 0.76575 0.81418 0.91200 1.90701 1.49899 1.55168 1.46316 1.18866 0.90890 0.84893 0.87651 1.90598 1.58307 1.55406 1.44248 1.41560 1.51964 1.09890 1.09668 1.19897 1.42635 0.96752 0.84364 0.86927 1.25595 0.95785 0.95639 1.00511 1.69480 1.41157 1.07754 1.32125 0.85715 0.79230 0.77860 0.80732 1.19833 1.20485 1.18876 0.91574 0.91872 0.91782 0.79933 0.90569 0.89050 0.89109 0.88782 0.90445 0.75150 0.75979 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.16 36.01 0.37 -0.41 16 2 C -0.22 -2.61 6.10 -105.05 -0.64 -3.25 16 3 C 0.05 0.54 11.96 -17.36 -0.21 0.33 16 4 N -0.29 -3.89 12.58 30.63 0.39 -3.50 16 5 N -0.36 -4.58 4.01 -63.88 -0.26 -4.83 16 6 C 0.10 0.91 11.10 59.85 0.66 1.58 16 7 C 0.06 0.82 6.30 -82.26 -0.52 0.30 16 8 C 0.19 2.49 5.47 -5.19 -0.03 2.47 16 9 N -0.71 -11.75 5.54 -62.11 -0.34 -12.10 16 10 C 0.52 10.71 7.87 -11.88 -0.09 10.62 16 11 O -0.54 -12.09 16.47 5.42 0.09 -12.00 16 12 C 0.39 9.65 7.82 -11.88 -0.09 9.55 16 13 O -0.60 -15.77 16.03 5.36 0.09 -15.68 16 14 N -0.50 -12.99 5.25 -11.59 -0.06 -13.05 16 15 C -0.31 -8.28 9.67 -15.15 -0.15 -8.43 16 16 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 17 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 18 N -0.87 -22.79 13.03 55.53 0.72 -22.07 16 19 Si 0.94 19.73 29.56 -169.99 -5.02 14.71 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.64 7.15 -51.93 -0.37 0.27 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.85 7.66 -51.93 -0.40 0.45 16 30 H 0.09 1.23 7.15 -51.93 -0.37 0.86 16 31 H 0.08 0.99 7.72 -51.93 -0.40 0.58 16 32 H 0.41 6.85 7.92 -40.82 -0.32 6.53 16 33 H 0.40 10.63 7.35 -40.82 -0.30 10.33 16 34 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -31.55 306.75 -4.36 -35.91 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -3.79 Total: 14.52 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: -0.79 Total: 13.48 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.45 Total: -55.55 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: 0.18 Total: -27.69 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.55 -4.36 -35.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394101370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.138 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds