Wall clock time and date at job start Mon Mar 30 2020 05:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33387 * 125.20712 * 2 1 4 4 C 1.38418 * 114.92590 * 179.97438 * 3 2 1 5 5 C 1.33390 * 114.91902 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20422 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46803 * 346.57501 * 6 5 4 8 8 C 1.50695 * 109.47509 * 106.57245 * 6 5 4 9 9 H 1.08004 * 119.99625 * 65.02478 * 8 6 5 10 10 C 1.37873 * 120.00366 * 245.02665 * 8 6 5 11 11 N 1.31519 * 119.99994 * 172.83336 * 10 8 6 12 12 Si 1.86796 * 119.99827 * 352.82923 * 10 8 6 13 13 H 1.48502 * 109.47411 * 85.62556 * 12 10 8 14 14 H 1.48508 * 109.47140 * 205.62345 * 12 10 8 15 15 H 1.48494 * 109.47422 * 325.62360 * 12 10 8 16 16 N 1.46896 * 109.47074 * 226.57838 * 6 5 4 17 17 C 1.46958 * 111.00497 * 51.19890 * 16 6 5 18 18 C 1.53048 * 109.36556 * 183.19391 * 17 16 6 19 19 N 1.46963 * 109.36200 * 301.59214 * 18 17 16 20 20 C 1.46958 * 110.87572 * 59.32380 * 19 18 17 21 21 C 1.46961 * 111.00052 * 175.00180 * 16 6 5 22 22 S 1.75883 * 109.59558 * 359.97438 * 5 4 3 23 23 H 1.08998 * 109.47143 * 89.99690 * 1 2 3 24 24 H 1.09007 * 109.47025 * 210.00179 * 1 2 3 25 25 H 1.09001 * 109.46739 * 329.99872 * 1 2 3 26 26 H 1.08007 * 122.53427 * 0.24869 * 3 2 1 27 27 H 1.07998 * 122.54492 * 179.97438 * 4 3 2 28 28 H 0.96995 * 119.99750 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.48553 * 303.15813 * 17 16 6 30 30 H 1.08995 * 109.49067 * 63.22009 * 17 16 6 31 31 H 1.09003 * 109.48389 * 181.63327 * 18 17 16 32 32 H 1.08993 * 109.51229 * 61.57086 * 18 17 16 33 33 H 1.00894 * 111.00173 * 295.45903 * 19 18 17 34 34 H 1.09002 * 109.48553 * 180.70986 * 20 19 18 35 35 H 1.09000 * 109.50418 * 60.65926 * 20 19 18 36 36 H 1.09003 * 109.48630 * 296.77411 * 21 16 6 37 37 H 1.08993 * 109.49285 * 56.83948 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9750 -0.4478 0.0016 6 6 5.3860 -0.9772 0.0018 7 1 6.0773 -0.1691 -0.2376 8 6 5.7143 -1.5320 1.3639 9 1 5.1846 -2.3961 1.7369 10 6 6.6907 -0.9365 2.1339 11 7 6.8807 -1.3297 3.3745 12 14 7.7437 0.4286 1.4151 13 1 7.0444 1.7291 1.5737 14 1 9.0459 0.4767 2.1275 15 1 7.9782 0.1656 -0.0275 16 7 5.5099 -2.0413 -1.0033 17 6 4.9989 -1.5963 -2.3073 18 6 5.0719 -2.7558 -3.3036 19 7 6.4634 -3.2153 -3.4154 20 6 6.9744 -3.6603 -2.1114 21 6 6.9013 -2.5008 -1.1150 22 16 2.5209 -1.4372 0.0026 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8669 2.0895 0.0040 27 1 4.3721 1.6349 0.0002 28 1 7.5674 -0.9105 3.9163 29 1 3.9634 -1.2729 -2.2010 30 1 5.6040 -0.7658 -2.6709 31 1 4.7204 -2.4197 -4.2791 32 1 4.4451 -3.5761 -2.9540 33 1 7.0515 -2.4953 -3.8076 34 1 8.0098 -3.9837 -2.2177 35 1 6.3695 -4.4909 -1.7477 36 1 7.5281 -1.6806 -1.4650 37 1 7.2528 -2.8369 -0.1396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396689684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:09 Heat of formation + Delta-G solvation = 38.935275 kcal Electronic energy + Delta-G solvation = -18717.268764 eV Core-core repulsion = 16006.891884 eV Total energy + Delta-G solvation = -2710.376881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.81614 -37.21831 -34.62825 -32.34733 -31.37444 -30.40123 -28.52935 -25.52029 -24.45852 -22.87090 -22.25049 -21.05121 -19.81207 -18.24001 -17.12274 -16.29589 -15.55406 -14.85264 -14.59813 -14.28834 -14.16851 -13.75276 -13.50742 -13.39786 -13.03289 -12.70100 -12.50635 -11.99963 -11.95642 -11.70042 -11.25140 -11.15882 -11.08340 -10.89315 -10.71513 -10.66920 -10.19387 -10.09820 -9.88585 -9.62023 -8.79867 -8.13850 -7.67389 -7.66246 -7.42164 -6.30032 -4.28976 1.73943 2.36341 2.83793 3.11235 3.17793 3.21252 3.42610 4.19596 4.51127 4.69682 5.06241 5.33556 5.49995 5.56683 5.58413 5.64204 5.72795 5.74013 5.74637 5.88494 5.99402 6.02831 6.18836 6.20676 6.31325 6.35043 6.39408 6.59039 6.69729 6.80136 7.01025 7.16155 7.24553 7.34935 7.60593 7.83480 7.95266 8.40020 8.82408 9.30925 10.81680 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.010392 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.496632 B = 2693.744580 C = 4095.810022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.230 4.230 3 C -0.126 4.126 4 C -0.189 4.189 5 C -0.097 4.097 6 C 0.238 3.762 7 H 0.025 0.975 8 C -0.490 4.490 9 H 0.086 0.914 10 C 0.080 3.920 11 N -0.880 5.880 12 Si 0.868 3.132 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.268 1.268 16 N -0.523 5.523 17 C 0.006 3.994 18 C 0.063 3.937 19 N -0.690 5.690 20 C 0.059 3.941 21 C 0.029 3.971 22 S 0.121 5.879 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.268 0.732 29 H 0.078 0.922 30 H 0.017 0.983 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.331 0.669 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.017 0.983 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.665 1.358 -10.097 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.347 4.347 3 C -0.157 4.157 4 C -0.218 4.218 5 C -0.216 4.216 6 C 0.131 3.869 7 H 0.043 0.957 8 C -0.529 4.529 9 H 0.104 0.896 10 C -0.125 4.125 11 N -0.516 5.516 12 Si 0.695 3.305 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.193 1.193 16 N -0.249 5.249 17 C -0.124 4.124 18 C -0.067 4.067 19 N -0.318 5.318 20 C -0.070 4.070 21 C -0.101 4.101 22 S 0.385 5.615 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.035 0.965 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.293 -1.216 -9.962 11.846 hybrid contribution 1.615 4.130 0.178 4.438 sum -4.678 2.914 -9.784 11.230 Atomic orbital electron populations 1.20163 0.88903 1.02243 1.01636 1.24405 0.99392 0.97301 1.13644 1.19830 0.92943 0.98354 1.04549 1.19859 0.95755 0.96030 1.10139 1.25094 0.99458 0.95458 1.01540 1.18416 0.86290 0.89416 0.92799 0.95713 1.20749 1.20245 1.15045 0.96870 0.89628 1.25049 0.96701 0.96154 0.94560 1.69879 1.32772 1.41946 1.06980 0.87012 0.80744 0.83290 0.79466 1.19840 1.20965 1.19341 1.62477 1.19393 1.38372 1.04630 1.22934 1.01229 0.96393 0.91857 1.22043 0.90376 0.96918 0.97384 1.60852 1.03572 1.42397 1.24936 1.22120 0.99888 0.97715 0.87325 1.22618 0.89248 0.96506 1.01731 1.84145 0.95934 1.08435 1.72971 0.91779 0.91923 0.91550 0.85837 0.85886 0.92176 0.90353 0.96483 0.91326 0.90234 0.85243 0.91062 0.90153 0.96510 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.38 36.00 0.37 -0.53 16 2 C -0.23 -3.89 6.51 -36.00 -0.23 -4.13 16 3 C -0.13 -2.21 10.05 -41.21 -0.41 -2.62 16 4 C -0.19 -3.80 10.03 -41.21 -0.41 -4.22 16 5 C -0.10 -2.07 3.74 -36.00 -0.13 -2.21 16 6 C 0.24 5.48 1.89 -70.02 -0.13 5.35 16 7 H 0.03 0.61 4.62 -51.93 -0.24 0.37 16 8 C -0.49 -13.09 7.84 -34.44 -0.27 -13.36 16 9 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 10 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 11 N -0.88 -25.58 13.96 55.43 0.77 -24.81 16 12 Si 0.87 20.67 27.05 -169.99 -4.60 16.07 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.27 -6.17 6.59 56.52 0.37 -5.80 16 16 N -0.52 -10.68 4.45 -229.28 -1.02 -11.70 16 17 C 0.01 0.11 5.22 -3.77 -0.02 0.09 16 18 C 0.06 0.94 6.72 -3.76 -0.03 0.91 16 19 N -0.69 -10.18 6.91 -113.63 -0.79 -10.97 16 20 C 0.06 0.94 6.72 -3.77 -0.03 0.91 16 21 C 0.03 0.55 5.43 -3.77 -0.02 0.53 16 22 S 0.12 2.32 22.16 -107.50 -2.38 -0.07 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 27 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.08 1.40 5.87 -51.93 -0.30 1.10 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.33 4.55 8.89 -39.29 -0.35 4.20 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 37 H 0.10 2.09 7.15 -51.93 -0.37 1.72 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -28.46 307.56 -10.29 -38.75 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.50 Total: 5.24 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.41 Total: -17.16 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -1.03 Total: -47.48 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.60 Total: 16.07 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.38 Total: -0.07 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.46 -10.29 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396689684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.687 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds