Wall clock time and date at job start Mon Mar 30 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33387 * 125.20712 * 2 1 4 4 C 1.38418 * 114.92590 * 179.97438 * 3 2 1 5 5 C 1.33390 * 114.91902 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20422 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46803 * 346.57501 * 6 5 4 8 8 C 1.50695 * 109.47509 * 106.57245 * 6 5 4 9 9 H 1.08004 * 119.99625 * 65.02478 * 8 6 5 10 10 C 1.37873 * 120.00366 * 245.02665 * 8 6 5 11 11 N 1.31519 * 119.99994 * 172.83336 * 10 8 6 12 12 Si 1.86796 * 119.99827 * 352.82923 * 10 8 6 13 13 H 1.48502 * 109.47411 * 85.62556 * 12 10 8 14 14 H 1.48508 * 109.47140 * 205.62345 * 12 10 8 15 15 H 1.48494 * 109.47422 * 325.62360 * 12 10 8 16 16 N 1.46896 * 109.47074 * 226.57838 * 6 5 4 17 17 C 1.46958 * 111.00497 * 51.19890 * 16 6 5 18 18 C 1.53048 * 109.36556 * 183.19391 * 17 16 6 19 19 N 1.46963 * 109.36200 * 301.59214 * 18 17 16 20 20 C 1.46958 * 110.87572 * 59.32380 * 19 18 17 21 21 C 1.46961 * 111.00052 * 175.00180 * 16 6 5 22 22 S 1.75883 * 109.59558 * 359.97438 * 5 4 3 23 23 H 1.08998 * 109.47143 * 89.99690 * 1 2 3 24 24 H 1.09007 * 109.47025 * 210.00179 * 1 2 3 25 25 H 1.09001 * 109.46739 * 329.99872 * 1 2 3 26 26 H 1.08007 * 122.53427 * 0.24869 * 3 2 1 27 27 H 1.07998 * 122.54492 * 179.97438 * 4 3 2 28 28 H 0.96995 * 119.99750 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.48553 * 303.15813 * 17 16 6 30 30 H 1.08995 * 109.49067 * 63.22009 * 17 16 6 31 31 H 1.09003 * 109.48389 * 181.63327 * 18 17 16 32 32 H 1.08993 * 109.51229 * 61.57086 * 18 17 16 33 33 H 1.00894 * 111.00173 * 295.45903 * 19 18 17 34 34 H 1.09002 * 109.48553 * 180.70986 * 20 19 18 35 35 H 1.09000 * 109.50418 * 60.65926 * 20 19 18 36 36 H 1.09003 * 109.48630 * 296.77411 * 21 16 6 37 37 H 1.08993 * 109.49285 * 56.83948 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 3.9750 -0.4478 0.0016 6 6 5.3860 -0.9772 0.0018 7 1 6.0773 -0.1691 -0.2376 8 6 5.7143 -1.5320 1.3639 9 1 5.1846 -2.3961 1.7369 10 6 6.6907 -0.9365 2.1339 11 7 6.8807 -1.3297 3.3745 12 14 7.7437 0.4286 1.4151 13 1 7.0444 1.7291 1.5737 14 1 9.0459 0.4767 2.1275 15 1 7.9782 0.1656 -0.0275 16 7 5.5099 -2.0413 -1.0033 17 6 4.9989 -1.5963 -2.3073 18 6 5.0719 -2.7558 -3.3036 19 7 6.4634 -3.2153 -3.4154 20 6 6.9744 -3.6603 -2.1114 21 6 6.9013 -2.5008 -1.1150 22 16 2.5209 -1.4372 0.0026 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8669 2.0895 0.0040 27 1 4.3721 1.6349 0.0002 28 1 7.5674 -0.9105 3.9163 29 1 3.9634 -1.2729 -2.2010 30 1 5.6040 -0.7658 -2.6709 31 1 4.7204 -2.4197 -4.2791 32 1 4.4451 -3.5761 -2.9540 33 1 7.0515 -2.4953 -3.8076 34 1 8.0098 -3.9837 -2.2177 35 1 6.3695 -4.4909 -1.7477 36 1 7.5281 -1.6806 -1.4650 37 1 7.2528 -2.8369 -0.1396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396689684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:08 Heat of formation + Delta-G solvation = 18.936566 kcal Electronic energy + Delta-G solvation = -18718.135974 eV Core-core repulsion = 16006.891884 eV Total energy + Delta-G solvation = -2711.244090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31779 -38.64744 -36.20113 -34.29895 -32.70066 -31.79500 -30.14060 -27.11338 -25.97386 -24.26193 -23.70781 -22.65426 -21.29771 -19.79807 -19.06114 -17.79142 -17.09971 -16.40095 -16.18667 -15.73543 -15.65983 -15.20310 -15.01867 -14.81709 -14.60172 -14.27775 -13.87853 -13.46323 -13.34642 -13.11209 -12.90952 -12.71500 -12.58293 -12.31147 -12.22298 -12.09116 -11.96283 -11.74492 -11.50282 -11.39660 -10.89070 -9.48326 -9.19075 -9.14319 -9.02159 -8.40806 -6.43154 0.25951 0.88824 1.20395 1.21114 1.28990 1.35950 1.93896 2.18935 2.87062 3.16898 3.40841 4.07805 4.11560 4.15766 4.25443 4.28247 4.35453 4.47541 4.54408 4.55341 4.69854 4.76909 4.81916 4.82928 4.85545 5.00616 5.08916 5.16140 5.21674 5.32356 5.39585 5.52860 5.75673 5.96174 5.99749 6.29446 6.45380 6.51875 6.65368 7.20386 8.75411 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.010392 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.496632 B = 2693.744580 C = 4095.810022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.207 4.207 3 C -0.141 4.141 4 C -0.185 4.185 5 C -0.138 4.138 6 C 0.246 3.754 7 H 0.013 0.987 8 C -0.485 4.485 9 H 0.039 0.961 10 C 0.029 3.971 11 N -0.931 5.931 12 Si 0.927 3.073 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.257 1.257 16 N -0.533 5.533 17 C 0.011 3.989 18 C 0.070 3.930 19 N -0.681 5.681 20 C 0.071 3.929 21 C 0.030 3.970 22 S 0.104 5.896 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.156 0.844 27 H 0.123 0.877 28 H 0.269 0.731 29 H 0.075 0.925 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.342 0.658 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.013 0.987 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 2.582 -12.523 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.324 4.324 3 C -0.171 4.171 4 C -0.215 4.215 5 C -0.257 4.257 6 C 0.138 3.862 7 H 0.031 0.969 8 C -0.524 4.524 9 H 0.057 0.943 10 C -0.171 4.171 11 N -0.570 5.570 12 Si 0.752 3.248 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.182 1.182 16 N -0.258 5.258 17 C -0.119 4.119 18 C -0.060 4.060 19 N -0.309 5.309 20 C -0.060 4.060 21 C -0.100 4.100 22 S 0.367 5.633 23 H 0.105 0.895 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.174 0.826 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.031 0.969 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.643 0.002 -12.421 14.584 hybrid contribution 1.864 3.716 0.887 4.251 sum -5.778 3.718 -11.534 13.426 Atomic orbital electron populations 1.20355 0.85532 1.03661 1.03568 1.24961 1.01321 0.95526 1.10580 1.20079 0.91727 1.00156 1.05111 1.20157 0.97342 0.95464 1.08533 1.24875 0.99414 0.96491 1.04913 1.18137 0.87378 0.89249 0.91413 0.96941 1.20761 1.19412 1.13521 0.98714 0.94293 1.25739 0.97989 0.98633 0.94715 1.70011 1.34210 1.44169 1.08569 0.86055 0.79103 0.80442 0.79211 1.19267 1.20559 1.18203 1.62319 1.20044 1.37550 1.05893 1.22980 1.00703 0.97486 0.90712 1.22059 0.90473 0.95566 0.97929 1.60852 1.03661 1.42730 1.23662 1.22033 1.01259 0.95821 0.86842 1.22639 0.88583 0.97639 1.01120 1.84121 0.95866 1.10007 1.73290 0.89452 0.91253 0.89361 0.82614 0.85902 0.92161 0.90646 0.96646 0.88306 0.90837 0.84095 0.88784 0.90928 0.96920 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.38 71.24 0.74 -0.82 16 2 C -0.21 -6.42 6.51 24.59 0.16 -6.26 16 3 C -0.14 -4.57 10.05 21.21 0.21 -4.36 16 4 C -0.18 -7.25 10.03 21.21 0.21 -7.04 16 5 C -0.14 -5.96 3.74 24.59 0.09 -5.87 16 6 C 0.25 11.59 1.89 43.42 0.08 11.67 16 7 H 0.01 0.64 4.62 -2.39 -0.01 0.63 16 8 C -0.48 -27.19 7.84 25.60 0.20 -26.99 16 9 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 10 C 0.03 1.66 5.47 84.65 0.46 2.13 16 11 N -0.93 -56.72 13.96 21.45 0.30 -56.42 16 12 Si 0.93 43.72 27.05 68.60 1.86 45.58 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.26 -11.53 6.59 99.48 0.66 -10.87 16 16 N -0.53 -21.98 4.45 -879.32 -3.91 -25.89 16 17 C 0.01 0.38 5.22 86.31 0.45 0.83 16 18 C 0.07 1.92 6.72 86.31 0.58 2.50 16 19 N -0.68 -18.43 6.91 -513.43 -3.55 -21.98 16 20 C 0.07 2.16 6.72 86.31 0.58 2.74 16 21 C 0.03 1.17 5.43 86.31 0.47 1.64 16 22 S 0.10 3.91 22.16 -56.49 -1.25 2.65 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.08 2.61 5.87 -2.39 -0.01 2.60 16 30 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.34 8.37 8.89 -89.70 -0.80 7.57 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.01 0.50 8.08 -2.39 -0.02 0.48 16 37 H 0.06 2.89 7.15 -2.39 -0.02 2.87 16 Total: -1.00 -64.48 307.56 -2.10 -66.58 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.21 Total: 19.32 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 4.24 Total: -29.84 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -7.16 Total: -104.30 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.86 Total: 45.58 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.65 kcal Total: -64.48 -2.10 -66.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396689684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.517 kcal (2) G-P(sol) polarization free energy of solvation -64.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds