Wall clock time and date at job start Mon Mar 30 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33381 * 125.20104 * 2 1 4 4 C 1.38427 * 114.91589 * 179.79602 * 3 2 1 5 5 C 1.33387 * 114.92486 * 0.42404 * 4 3 2 6 6 C 1.50699 * 125.20770 * 179.86292 * 5 4 3 7 7 H 1.09007 * 109.46495 * 22.28286 * 6 5 4 8 8 C 1.50695 * 109.46955 * 262.28476 * 6 5 4 9 9 H 1.08009 * 120.00023 * 114.57585 * 8 6 5 10 10 C 1.37877 * 119.99940 * 294.57008 * 8 6 5 11 11 N 1.31514 * 120.00175 * 351.38459 * 10 8 6 12 12 Si 1.86800 * 120.00031 * 171.38108 * 10 8 6 13 13 H 1.48497 * 109.47256 * 90.00136 * 12 10 8 14 14 H 1.48501 * 109.47295 * 210.00462 * 12 10 8 15 15 H 1.48507 * 109.47096 * 330.00170 * 12 10 8 16 16 N 1.46897 * 109.47147 * 142.27941 * 6 5 4 17 17 C 1.46960 * 110.99809 * 173.01981 * 16 6 5 18 18 C 1.53053 * 109.36541 * 183.19298 * 17 16 6 19 19 N 1.46965 * 109.35997 * 301.59883 * 18 17 16 20 20 C 1.46951 * 110.88227 * 59.32030 * 19 18 17 21 21 C 1.46950 * 111.00332 * 296.81979 * 16 6 5 22 22 S 1.75884 * 125.19909 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47065 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47014 * 299.99789 * 1 2 3 25 25 H 1.08995 * 109.47212 * 59.99884 * 1 2 3 26 26 H 1.07997 * 122.54405 * 0.02562 * 3 2 1 27 27 H 1.08003 * 122.54115 * 180.27770 * 4 3 2 28 28 H 0.96996 * 120.00231 * 180.02562 * 11 10 8 29 29 H 1.09007 * 109.48897 * 303.15633 * 17 16 6 30 30 H 1.08993 * 109.49178 * 63.22239 * 17 16 6 31 31 H 1.08993 * 109.48728 * 181.63271 * 18 17 16 32 32 H 1.09004 * 109.48932 * 61.56068 * 18 17 16 33 33 H 1.00904 * 110.99118 * 183.18997 * 19 18 17 34 34 H 1.08994 * 109.49053 * 180.70880 * 20 19 18 35 35 H 1.09004 * 109.48836 * 60.64231 * 20 19 18 36 36 H 1.09000 * 109.48910 * 296.78046 * 21 16 6 37 37 H 1.09004 * 109.49058 * 56.84356 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0045 5 6 3.9751 -0.4478 -0.0009 6 6 5.3860 -0.9772 -0.0006 7 1 6.0594 -0.2162 0.3939 8 6 5.7920 -1.3257 -1.4094 9 1 6.5831 -0.7740 -1.8956 10 6 5.1536 -2.3489 -2.0776 11 7 4.3124 -3.1297 -1.4354 12 14 5.4834 -2.6262 -3.8952 13 1 6.6218 -3.5663 -4.0540 14 1 4.2734 -3.2014 -4.5358 15 1 5.8171 -1.3312 -4.5410 16 7 5.4580 -2.1788 0.8413 17 6 6.7770 -2.8181 0.7350 18 6 6.7849 -4.1059 1.5620 19 7 6.4680 -3.7882 2.9615 20 6 5.1491 -3.1490 3.0678 21 6 5.1411 -1.8612 2.2407 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8669 2.0894 0.0004 27 1 4.3721 1.6349 0.0094 28 1 3.8636 -3.8498 -1.9054 29 1 6.9833 -3.0549 -0.3088 30 1 7.5417 -2.1390 1.1121 31 1 7.7713 -4.5666 1.5080 32 1 6.0388 -4.7959 1.1678 33 1 6.5175 -4.6137 3.5397 34 1 4.9428 -2.9122 4.1115 35 1 4.3844 -3.8281 2.6906 36 1 5.8872 -1.1713 2.6349 37 1 4.1548 -1.4004 2.2947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396689686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:12 Heat of formation + Delta-G solvation = 45.195643 kcal Electronic energy + Delta-G solvation = -19006.038537 eV Core-core repulsion = 16295.933126 eV Total energy + Delta-G solvation = -2710.105411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.24166 -36.71010 -34.48399 -32.00348 -31.00958 -29.98205 -28.07293 -25.19095 -24.37960 -22.49602 -21.89314 -20.93998 -18.90658 -17.75448 -16.45052 -16.23550 -15.24021 -14.76646 -14.24957 -13.88831 -13.61929 -13.53085 -13.31323 -13.10220 -12.80747 -12.39212 -12.11138 -11.72375 -11.44759 -11.32812 -10.98924 -10.91637 -10.73260 -10.57044 -10.44312 -10.18520 -10.00261 -9.73562 -9.31694 -9.23696 -8.56117 -7.97997 -7.19799 -7.05706 -6.87305 -6.00301 -4.19055 2.27655 3.00248 3.23287 3.32420 3.36735 3.52617 3.87996 4.35234 4.77503 5.02666 5.31127 5.69400 5.75290 5.84247 5.86989 5.98670 6.02808 6.12023 6.15259 6.24294 6.33709 6.37597 6.46345 6.61432 6.67781 6.76549 6.77707 7.02510 7.14295 7.28636 7.45273 7.56326 7.67138 7.71123 7.81614 7.94314 8.37573 8.59572 8.89043 9.43790 10.91006 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.010909 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.144722 B = 2566.142176 C = 3825.308665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.287 4.287 3 C -0.135 4.135 4 C -0.208 4.208 5 C -0.092 4.092 6 C 0.270 3.730 7 H 0.009 0.991 8 C -0.522 4.522 9 H 0.061 0.939 10 C 0.082 3.918 11 N -0.818 5.818 12 Si 0.882 3.118 13 H -0.280 1.280 14 H -0.284 1.284 15 H -0.274 1.274 16 N -0.493 5.493 17 C 0.085 3.915 18 C 0.061 3.939 19 N -0.694 5.694 20 C 0.066 3.934 21 C 0.050 3.950 22 S 0.219 5.781 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.261 0.739 29 H 0.092 0.908 30 H 0.011 0.989 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.329 0.671 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.018 0.982 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -0.200 5.341 5.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.405 4.405 3 C -0.167 4.167 4 C -0.237 4.237 5 C -0.213 4.213 6 C 0.162 3.838 7 H 0.026 0.974 8 C -0.561 4.561 9 H 0.079 0.921 10 C -0.126 4.126 11 N -0.451 5.451 12 Si 0.709 3.291 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.199 1.199 16 N -0.217 5.217 17 C -0.044 4.044 18 C -0.068 4.068 19 N -0.325 5.325 20 C -0.064 4.064 21 C -0.079 4.079 22 S 0.485 5.515 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.145 0.855 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.657 -1.664 5.138 6.019 hybrid contribution 0.429 1.343 -1.055 1.761 sum -2.228 -0.321 4.083 4.663 Atomic orbital electron populations 1.20037 0.90073 1.01249 1.00907 1.25086 0.99622 1.01106 1.14650 1.19612 0.93159 0.97683 1.06277 1.19676 0.95301 0.95977 1.12765 1.25016 1.00132 0.95171 1.00950 1.17778 0.85979 0.86761 0.93233 0.97376 1.20898 1.20023 1.17648 0.97530 0.92057 1.24905 0.94953 0.95346 0.97378 1.69816 1.25138 1.15330 1.34787 0.86761 0.77875 0.78486 0.85999 1.20614 1.20978 1.19893 1.62256 1.28205 1.27768 1.03494 1.21742 0.89523 0.93000 1.00105 1.22041 0.99140 0.98218 0.87440 1.60604 1.30553 1.31303 1.10001 1.21912 0.89493 0.96567 0.98439 1.22156 0.99989 0.94857 0.90945 1.84823 0.93554 1.04163 1.68987 0.92632 0.92408 0.92539 0.87366 0.86724 0.92812 0.88966 0.97049 0.92031 0.94353 0.85516 0.92000 0.94524 0.96424 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.38 36.01 0.37 -0.64 16 2 C -0.29 -5.70 6.51 -36.00 -0.23 -5.94 16 3 C -0.14 -2.73 10.05 -41.21 -0.41 -3.15 16 4 C -0.21 -4.56 10.04 -41.21 -0.41 -4.98 16 5 C -0.09 -2.16 3.91 -36.00 -0.14 -2.30 16 6 C 0.27 6.50 2.09 -70.02 -0.15 6.35 16 7 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 8 C -0.52 -13.37 7.17 -34.44 -0.25 -13.61 16 9 H 0.06 1.59 7.83 -52.48 -0.41 1.18 16 10 C 0.08 2.08 4.70 -17.82 -0.08 1.99 16 11 N -0.82 -20.66 9.74 55.43 0.54 -20.12 16 12 Si 0.88 20.09 29.55 -169.99 -5.02 15.06 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 N -0.49 -10.99 3.07 -229.28 -0.70 -11.69 16 17 C 0.08 1.80 5.27 -3.76 -0.02 1.78 16 18 C 0.06 1.11 6.72 -3.76 -0.03 1.08 16 19 N -0.69 -11.59 6.90 -113.63 -0.78 -12.37 16 20 C 0.07 1.14 6.72 -3.77 -0.03 1.12 16 21 C 0.05 1.00 5.39 -3.77 -0.02 0.98 16 22 S 0.22 4.85 20.02 -107.50 -2.15 2.70 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 28 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.09 2.14 6.41 -51.93 -0.33 1.81 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.33 4.59 8.90 -39.29 -0.35 4.24 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.40 6.61 -51.93 -0.34 1.06 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -26.28 305.13 -10.57 -36.84 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.64 Total: 2.28 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -1.40 Total: -17.30 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.95 Total: -44.18 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -2.15 Total: 2.70 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.28 -10.57 -36.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396689686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.038 kcal (2) G-P(sol) polarization free energy of solvation -26.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds