Wall clock time and date at job start Mon Mar 30 2020 05:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33381 * 125.20104 * 2 1 4 4 C 1.38427 * 114.91589 * 179.79602 * 3 2 1 5 5 C 1.33387 * 114.92486 * 0.42404 * 4 3 2 6 6 C 1.50699 * 125.20770 * 179.86292 * 5 4 3 7 7 H 1.09007 * 109.46495 * 22.28286 * 6 5 4 8 8 C 1.50695 * 109.46955 * 262.28476 * 6 5 4 9 9 H 1.08009 * 120.00023 * 114.57585 * 8 6 5 10 10 C 1.37877 * 119.99940 * 294.57008 * 8 6 5 11 11 N 1.31514 * 120.00175 * 351.38459 * 10 8 6 12 12 Si 1.86800 * 120.00031 * 171.38108 * 10 8 6 13 13 H 1.48497 * 109.47256 * 90.00136 * 12 10 8 14 14 H 1.48501 * 109.47295 * 210.00462 * 12 10 8 15 15 H 1.48507 * 109.47096 * 330.00170 * 12 10 8 16 16 N 1.46897 * 109.47147 * 142.27941 * 6 5 4 17 17 C 1.46960 * 110.99809 * 173.01981 * 16 6 5 18 18 C 1.53053 * 109.36541 * 183.19298 * 17 16 6 19 19 N 1.46965 * 109.35997 * 301.59883 * 18 17 16 20 20 C 1.46951 * 110.88227 * 59.32030 * 19 18 17 21 21 C 1.46950 * 111.00332 * 296.81979 * 16 6 5 22 22 S 1.75884 * 125.19909 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47065 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47014 * 299.99789 * 1 2 3 25 25 H 1.08995 * 109.47212 * 59.99884 * 1 2 3 26 26 H 1.07997 * 122.54405 * 0.02562 * 3 2 1 27 27 H 1.08003 * 122.54115 * 180.27770 * 4 3 2 28 28 H 0.96996 * 120.00231 * 180.02562 * 11 10 8 29 29 H 1.09007 * 109.48897 * 303.15633 * 17 16 6 30 30 H 1.08993 * 109.49178 * 63.22239 * 17 16 6 31 31 H 1.08993 * 109.48728 * 181.63271 * 18 17 16 32 32 H 1.09004 * 109.48932 * 61.56068 * 18 17 16 33 33 H 1.00904 * 110.99118 * 183.18997 * 19 18 17 34 34 H 1.08994 * 109.49053 * 180.70880 * 20 19 18 35 35 H 1.09004 * 109.48836 * 60.64231 * 20 19 18 36 36 H 1.09000 * 109.48910 * 296.78046 * 21 16 6 37 37 H 1.09004 * 109.49058 * 56.84356 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0045 5 6 3.9751 -0.4478 -0.0009 6 6 5.3860 -0.9772 -0.0006 7 1 6.0594 -0.2162 0.3939 8 6 5.7920 -1.3257 -1.4094 9 1 6.5831 -0.7740 -1.8956 10 6 5.1536 -2.3489 -2.0776 11 7 4.3124 -3.1297 -1.4354 12 14 5.4834 -2.6262 -3.8952 13 1 6.6218 -3.5663 -4.0540 14 1 4.2734 -3.2014 -4.5358 15 1 5.8171 -1.3312 -4.5410 16 7 5.4580 -2.1788 0.8413 17 6 6.7770 -2.8181 0.7350 18 6 6.7849 -4.1059 1.5620 19 7 6.4680 -3.7882 2.9615 20 6 5.1491 -3.1490 3.0678 21 6 5.1411 -1.8612 2.2407 22 16 2.5209 -1.4372 -0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8669 2.0894 0.0004 27 1 4.3721 1.6349 0.0094 28 1 3.8636 -3.8498 -1.9054 29 1 6.9833 -3.0549 -0.3088 30 1 7.5417 -2.1390 1.1121 31 1 7.7713 -4.5666 1.5080 32 1 6.0388 -4.7959 1.1678 33 1 6.5175 -4.6137 3.5397 34 1 4.9428 -2.9122 4.1115 35 1 4.3844 -3.8281 2.6906 36 1 5.8872 -1.1713 2.6349 37 1 4.1548 -1.4004 2.2947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396689686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:11 Heat of formation + Delta-G solvation = 29.641614 kcal Electronic energy + Delta-G solvation = -19006.713010 eV Core-core repulsion = 16295.933126 eV Total energy + Delta-G solvation = -2710.779884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.88563 -38.32522 -36.14569 -33.82476 -32.52281 -31.55087 -29.75137 -26.90867 -26.00505 -24.06781 -23.52267 -22.67491 -20.52796 -19.42458 -18.26367 -17.83342 -16.87548 -16.61578 -15.90539 -15.44788 -15.22620 -15.12576 -14.92257 -14.63019 -14.32257 -13.92221 -13.68620 -13.43055 -13.03285 -12.94507 -12.71061 -12.59750 -12.44729 -12.26681 -12.03388 -11.87311 -11.75962 -11.38561 -11.08707 -10.96359 -10.46270 -9.38736 -8.88027 -8.79133 -8.62896 -7.90844 -6.16107 0.61326 1.32690 1.40194 1.45474 1.51820 1.83186 2.20448 2.46197 3.18433 3.40392 3.53746 4.21307 4.31505 4.33224 4.43739 4.55263 4.57912 4.61186 4.69394 4.77101 4.86321 4.88041 4.96735 4.99087 5.06319 5.10899 5.24031 5.31003 5.43243 5.62576 5.70967 5.81199 5.99217 6.05189 6.12513 6.46123 6.62763 6.83286 7.02270 7.48042 8.97162 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.010909 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.144722 B = 2566.142176 C = 3825.308665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.271 4.271 3 C -0.147 4.147 4 C -0.211 4.211 5 C -0.120 4.120 6 C 0.272 3.728 7 H -0.014 1.014 8 C -0.545 4.545 9 H 0.044 0.956 10 C 0.058 3.942 11 N -0.825 5.825 12 Si 0.928 3.072 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.282 1.282 16 N -0.497 5.497 17 C 0.086 3.914 18 C 0.072 3.928 19 N -0.690 5.690 20 C 0.073 3.927 21 C 0.052 3.948 22 S 0.191 5.809 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.002 0.998 31 H 0.086 0.914 32 H 0.024 0.976 33 H 0.351 0.649 34 H 0.092 0.908 35 H 0.027 0.973 36 H 0.009 0.991 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 -0.395 6.096 7.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.389 4.389 3 C -0.178 4.178 4 C -0.241 4.241 5 C -0.240 4.240 6 C 0.163 3.837 7 H 0.004 0.996 8 C -0.584 4.584 9 H 0.063 0.937 10 C -0.149 4.149 11 N -0.458 5.458 12 Si 0.755 3.245 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.207 1.207 16 N -0.222 5.222 17 C -0.042 4.042 18 C -0.058 4.058 19 N -0.323 5.323 20 C -0.057 4.057 21 C -0.077 4.077 22 S 0.456 5.544 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.136 0.864 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.020 0.980 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.169 0.831 34 H 0.110 0.890 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.967 -1.875 5.912 7.363 hybrid contribution 0.806 1.491 -1.238 2.099 sum -3.162 -0.384 4.674 5.656 Atomic orbital electron populations 1.20184 0.86823 1.02450 1.02876 1.25521 1.01624 0.99418 1.12361 1.19858 0.92245 0.99294 1.06420 1.19984 0.96673 0.95685 1.11777 1.24941 1.00119 0.95916 1.02989 1.17653 0.86377 0.86808 0.92814 0.99619 1.20934 1.20470 1.18346 0.98635 0.93733 1.25268 0.94877 0.95058 0.99714 1.69928 1.25283 1.15255 1.35309 0.86041 0.77770 0.77865 0.82823 1.20092 1.20780 1.20749 1.62201 1.28505 1.26915 1.04536 1.21686 0.88954 0.94281 0.99307 1.21883 1.00111 0.95977 0.87792 1.60535 1.30013 1.32483 1.09246 1.21853 0.89559 0.94846 0.99425 1.22166 0.99137 0.96323 0.90118 1.84726 0.93975 1.05866 1.69829 0.91913 0.89949 0.90834 0.84443 0.86366 0.93027 0.91501 0.98000 0.89597 0.95791 0.83068 0.89005 0.95461 0.97307 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.82 10.38 71.24 0.74 -1.08 16 2 C -0.27 -10.20 6.51 24.59 0.16 -10.04 16 3 C -0.15 -5.67 10.05 21.22 0.21 -5.45 16 4 C -0.21 -9.24 10.04 21.22 0.21 -9.03 16 5 C -0.12 -5.68 3.91 24.59 0.10 -5.58 16 6 C 0.27 13.55 2.09 43.42 0.09 13.64 16 7 H -0.01 -0.72 8.13 -2.38 -0.02 -0.73 16 8 C -0.55 -28.93 7.17 25.60 0.18 -28.75 16 9 H 0.04 2.43 7.83 -2.91 -0.02 2.40 16 10 C 0.06 2.99 4.70 84.65 0.40 3.39 16 11 N -0.82 -42.14 9.74 21.45 0.21 -41.94 16 12 Si 0.93 41.74 29.55 68.60 2.03 43.76 16 13 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 14 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 N -0.50 -22.66 3.07 -879.29 -2.70 -25.35 16 17 C 0.09 3.75 5.27 86.31 0.45 4.20 16 18 C 0.07 2.55 6.72 86.31 0.58 3.14 16 19 N -0.69 -21.71 6.90 -513.42 -3.54 -25.26 16 20 C 0.07 2.42 6.72 86.31 0.58 3.00 16 21 C 0.05 2.09 5.39 86.31 0.47 2.55 16 22 S 0.19 8.38 20.02 -56.49 -1.13 7.25 16 23 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 28 H 0.26 12.94 8.31 -92.71 -0.77 12.17 16 29 H 0.07 3.22 6.41 -2.38 -0.02 3.21 16 30 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.35 8.76 8.90 -89.69 -0.80 7.96 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.06 2.51 6.61 -2.38 -0.02 2.50 16 Total: -1.00 -56.64 305.13 -0.71 -57.35 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.26 Total: 14.20 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 4.17 Total: -30.01 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -6.03 Total: -92.55 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 8.38 SS G_CDS: -1.13 Total: 7.25 kcal Total: -56.64 -0.71 -57.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396689686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.989 kcal (2) G-P(sol) polarization free energy of solvation -56.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds