Wall clock time and date at job start Mon Mar 30 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38422 * 122.53731 * 2 1 4 4 C 1.33391 * 114.92052 * 180.27815 * 3 2 1 5 5 S 1.75890 * 109.59347 * 359.77432 * 4 3 2 6 6 C 1.33385 * 122.54059 * 179.84040 * 2 1 3 7 7 C 1.50702 * 125.20293 * 0.02562 * 6 2 1 8 8 H 1.09003 * 109.47098 * 17.94681 * 7 6 2 9 9 C 1.50699 * 109.46942 * 257.94921 * 7 6 2 10 10 H 1.08004 * 120.00039 * 115.15860 * 9 7 6 11 11 C 1.37883 * 120.00116 * 295.42907 * 9 7 6 12 12 N 1.31516 * 119.99749 * 349.91654 * 11 9 7 13 13 Si 1.86799 * 120.00080 * 169.91516 * 11 9 7 14 14 H 1.48500 * 109.46981 * 90.00258 * 13 11 9 15 15 H 1.48496 * 109.46776 * 210.00099 * 13 11 9 16 16 H 1.48504 * 109.46987 * 330.00165 * 13 11 9 17 17 N 1.46899 * 109.47136 * 137.95001 * 7 6 2 18 18 C 1.46955 * 111.00021 * 173.48518 * 17 7 6 19 19 C 1.53053 * 109.36800 * 183.18460 * 18 17 7 20 20 N 1.46963 * 109.36347 * 301.60548 * 19 18 17 21 21 C 1.46957 * 110.88244 * 59.31759 * 20 19 18 22 22 C 1.46955 * 111.00054 * 297.28473 * 17 7 6 23 23 H 1.09008 * 109.46453 * 270.16335 * 1 2 3 24 24 H 1.08995 * 109.47531 * 30.16422 * 1 2 3 25 25 H 1.09005 * 109.47082 * 150.16936 * 1 2 3 26 26 H 1.07999 * 122.53938 * 0.04992 * 3 2 1 27 27 H 1.07997 * 125.20691 * 179.79162 * 4 3 2 28 28 H 0.97000 * 119.99802 * 179.97438 * 12 11 9 29 29 H 1.08994 * 109.49220 * 303.15609 * 18 17 7 30 30 H 1.09005 * 109.48687 * 63.22252 * 18 17 7 31 31 H 1.08990 * 109.49384 * 181.63348 * 19 18 17 32 32 H 1.09009 * 109.50180 * 61.57893 * 19 18 17 33 33 H 1.00894 * 110.99805 * 295.44308 * 20 19 18 34 34 H 1.09000 * 109.48347 * 180.71327 * 21 20 19 35 35 H 1.08995 * 109.49129 * 60.64450 * 21 20 19 36 36 H 1.09001 * 109.49153 * 296.77876 * 22 17 7 37 37 H 1.09006 * 109.48864 * 56.82204 * 22 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9902 -0.0059 5 16 3.9387 -0.7304 -0.0053 6 6 2.2245 -1.1244 0.0031 7 6 1.6537 -2.5192 0.0065 8 1 0.6114 -2.4860 -0.3107 9 6 1.7375 -3.0929 1.3975 10 1 0.8336 -3.3212 1.9428 11 6 2.9680 -3.3210 1.9762 12 7 4.0623 -3.2283 1.2526 13 14 3.0808 -3.7617 3.7879 14 1 3.0114 -5.2369 3.9438 15 1 4.3676 -3.2658 4.3387 16 1 1.9531 -3.1328 4.5215 17 7 2.4204 -3.3643 -0.9187 18 6 1.9926 -4.7672 -0.8280 19 6 2.8667 -5.6248 -1.7462 20 7 2.7548 -5.1312 -3.1259 21 6 3.1827 -3.7282 -3.2166 22 6 2.3085 -2.8708 -2.2984 23 1 -0.3632 0.0029 1.0278 24 1 -0.3634 0.8884 -0.5163 25 1 -0.3633 -0.8915 -0.5112 26 1 1.7964 2.1464 0.0008 27 1 4.3078 1.7823 -0.0100 28 1 4.9280 -3.3885 1.6598 29 1 2.0965 -5.1133 0.2003 30 1 0.9504 -4.8503 -1.1364 31 1 2.5324 -6.6613 -1.7026 32 1 3.9054 -5.5636 -1.4212 33 1 1.8155 -5.2462 -3.4760 34 1 3.0787 -3.3822 -4.2450 35 1 4.2248 -3.6452 -2.9082 36 1 1.2700 -2.9323 -2.6236 37 1 2.6424 -1.8340 -2.3420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396941245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:30 Heat of formation + Delta-G solvation = 45.250589 kcal Electronic energy + Delta-G solvation = -19277.810595 eV Core-core repulsion = 16567.707566 eV Total energy + Delta-G solvation = -2710.103028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.51589 -37.06492 -34.34444 -31.95555 -30.20423 -29.94511 -28.05629 -25.67794 -24.27827 -22.53405 -22.06874 -20.90702 -19.57932 -17.35207 -16.52294 -16.07700 -15.07236 -14.76444 -14.24169 -13.99177 -13.94089 -13.58763 -13.22642 -13.03415 -12.62513 -12.13387 -11.92043 -11.66010 -11.42544 -11.14375 -10.97715 -10.87613 -10.76771 -10.66521 -10.57253 -10.40242 -10.24130 -9.89978 -9.44257 -9.25784 -8.56158 -7.85798 -7.30461 -6.99354 -6.91432 -6.05271 -4.23149 2.29284 3.05726 3.21194 3.30666 3.34495 3.53594 3.79019 4.32283 4.80901 4.97850 5.24434 5.79515 5.84358 5.89286 5.91256 6.00366 6.06392 6.13012 6.20056 6.24661 6.31731 6.38837 6.47518 6.54976 6.62120 6.72997 6.78909 6.95151 7.07876 7.19628 7.48440 7.57733 7.63923 7.67241 7.86142 7.90646 8.30292 8.53669 8.83708 9.39485 10.86495 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.011835 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.758796 B = 2365.356503 C = 3451.127001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.183 4.183 3 C -0.129 4.129 4 C -0.320 4.320 5 S 0.221 5.779 6 C -0.094 4.094 7 C 0.270 3.730 8 H 0.010 0.990 9 C -0.521 4.521 10 H 0.060 0.940 11 C 0.082 3.918 12 N -0.815 5.815 13 Si 0.881 3.119 14 H -0.280 1.280 15 H -0.283 1.283 16 H -0.274 1.274 17 N -0.487 5.487 18 C 0.046 3.954 19 C 0.060 3.940 20 N -0.691 5.691 21 C 0.065 3.935 22 C 0.013 3.987 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.263 0.737 29 H 0.094 0.906 30 H 0.001 0.999 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.327 0.673 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.007 0.993 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 1.227 -4.921 5.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.194 4.194 3 C -0.161 4.161 4 C -0.456 4.456 5 S 0.487 5.513 6 C -0.214 4.214 7 C 0.163 3.837 8 H 0.027 0.973 9 C -0.559 4.559 10 H 0.078 0.922 11 C -0.126 4.126 12 N -0.448 5.448 13 Si 0.709 3.291 14 H -0.206 1.206 15 H -0.209 1.209 16 H -0.199 1.199 17 N -0.212 5.212 18 C -0.083 4.083 19 C -0.069 4.069 20 N -0.318 5.318 21 C -0.065 4.065 22 C -0.118 4.118 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.019 0.981 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.025 0.975 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.973 0.126 -4.990 5.085 hybrid contribution -2.844 1.367 1.463 3.478 sum -1.871 1.493 -3.527 4.262 Atomic orbital electron populations 1.20247 0.91754 1.00458 1.00823 1.18490 0.96225 0.92100 1.12626 1.19606 0.93111 0.97635 1.05731 1.26190 0.99441 1.05009 1.14992 1.84991 1.06000 0.91681 1.68583 1.24816 0.96056 0.98874 1.01651 1.17809 0.88769 0.84654 0.92452 0.97264 1.20891 0.92846 1.43376 0.98815 0.92154 1.24904 0.95780 0.94774 0.97176 1.69748 0.97728 1.42928 1.34414 0.86757 0.77830 0.78591 0.85955 1.20573 1.20874 1.19922 1.62252 1.56579 1.00853 1.01467 1.22392 0.93709 0.90260 1.01965 1.22097 1.01629 0.96694 0.86505 1.60864 1.29192 1.19734 1.22058 1.22001 1.00308 0.86776 0.97438 1.22832 0.96440 1.00221 0.92306 0.92730 0.93552 0.92741 0.87382 0.84654 0.92621 0.88788 0.98110 0.91983 0.90129 0.85711 0.91958 0.90244 0.97533 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 9.84 36.01 0.35 -1.00 16 2 C -0.18 -3.91 5.80 -106.25 -0.62 -4.52 16 3 C -0.13 -2.58 9.98 -41.21 -0.41 -2.99 16 4 C -0.32 -6.41 11.23 29.04 0.33 -6.08 16 5 S 0.22 4.87 20.12 -107.50 -2.16 2.71 16 6 C -0.09 -2.14 3.81 -36.00 -0.14 -2.28 16 7 C 0.27 6.32 1.91 -70.02 -0.13 6.19 16 8 H 0.01 0.23 6.33 -51.93 -0.33 -0.10 16 9 C -0.52 -13.10 7.15 -34.44 -0.25 -13.34 16 10 H 0.06 1.54 7.83 -52.48 -0.41 1.13 16 11 C 0.08 2.03 4.75 -17.82 -0.08 1.95 16 12 N -0.81 -20.31 9.55 55.43 0.53 -19.78 16 13 Si 0.88 19.91 29.55 -169.99 -5.02 14.89 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 N -0.49 -10.52 3.16 -229.27 -0.73 -11.24 16 18 C 0.05 0.94 5.28 -3.77 -0.02 0.92 16 19 C 0.06 1.07 6.72 -3.76 -0.03 1.04 16 20 N -0.69 -11.34 6.91 -113.63 -0.79 -12.13 16 21 C 0.06 1.10 6.72 -3.77 -0.03 1.08 16 22 C 0.01 0.24 5.41 -3.77 -0.02 0.22 16 23 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 24 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 25 H 0.05 1.00 6.50 -51.93 -0.34 0.67 16 26 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.14 2.37 8.06 -52.49 -0.42 1.94 16 28 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 29 H 0.09 2.13 6.48 -51.93 -0.34 1.80 16 30 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 33 H 0.33 4.92 8.89 -39.30 -0.35 4.57 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 37 H 0.07 1.42 6.81 -51.93 -0.35 1.06 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -25.43 301.59 -10.14 -35.57 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.48 Total: 4.26 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -1.04 Total: -18.82 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.98 Total: -43.15 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -2.16 Total: 2.71 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.43 -10.14 -35.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396941245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.822 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds