Wall clock time and date at job start Mon Mar 30 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 126.39322 * 2 1 4 4 N 1.30503 * 108.69928 * 180.02562 * 3 2 1 5 5 C 1.34124 * 109.25583 * 0.02562 * 4 3 2 6 6 C 1.34675 * 108.02139 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.59403 * 179.73770 * 6 5 4 8 8 C 1.53000 * 109.46965 * 85.02209 * 7 6 5 9 9 N 1.46501 * 109.47376 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00565 * 180.02562 * 9 8 7 11 11 O 1.21438 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.48827 * 120.00266 * 179.97438 * 10 9 8 13 13 O 1.21508 * 120.00006 * 0.02562 * 12 10 9 14 14 N 1.34774 * 120.00266 * 180.02562 * 12 10 9 15 15 C 1.36115 * 120.00375 * 180.02562 * 14 12 10 16 16 H 1.07994 * 119.99907 * 359.97438 * 15 14 12 17 17 C 1.39586 * 120.00225 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00060 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99873 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47489 * 89.99803 * 19 17 15 21 21 H 1.48509 * 109.46884 * 209.99769 * 19 17 15 22 22 H 1.48497 * 109.47210 * 329.99390 * 19 17 15 23 23 H 1.09006 * 109.47289 * 269.95547 * 1 2 3 24 24 H 1.08996 * 109.47327 * 29.95915 * 1 2 3 25 25 H 1.09002 * 109.46825 * 149.95962 * 1 2 3 26 26 H 1.07997 * 125.65385 * 0.05440 * 3 2 1 27 27 H 1.07993 * 125.99299 * 180.02562 * 5 4 3 28 28 H 1.08989 * 109.47256 * 205.02277 * 7 6 5 29 29 H 1.09002 * 109.46995 * 325.02869 * 7 6 5 30 30 H 1.09002 * 109.47406 * 300.00344 * 8 7 6 31 31 H 1.09008 * 109.47150 * 60.00363 * 8 7 6 32 32 H 0.97003 * 119.99580 * 0.02562 * 9 8 7 33 33 H 0.97007 * 119.99579 * 0.02562 * 14 12 10 34 34 H 0.97007 * 119.99916 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6904 -0.0006 5 6 3.5461 -0.6504 -0.0015 6 6 2.2772 -1.1017 -0.0009 7 6 1.8363 -2.5428 -0.0072 8 6 1.8100 -3.0742 1.4273 9 7 1.3820 -4.4753 1.4213 10 6 1.2839 -5.1550 2.5810 11 8 1.5498 -4.6059 3.6310 12 6 0.8485 -6.5782 2.5748 13 8 0.5820 -7.1275 1.5243 14 7 0.7499 -7.2577 3.7345 15 6 0.3522 -8.5595 3.7289 16 1 0.1153 -9.0477 2.7952 17 6 0.2506 -9.2635 4.9300 18 7 -0.1326 -10.5163 4.9246 19 14 0.6597 -8.4188 6.5451 20 1 -0.5658 -7.7885 7.0985 21 1 1.1798 -9.4209 7.5099 22 1 1.6903 -7.3757 6.3111 23 1 -0.3634 -0.0008 1.0277 24 1 -0.3634 0.8903 -0.5132 25 1 -0.3633 -0.8897 -0.5145 26 1 1.9333 2.1144 0.0008 27 1 4.4368 -1.2610 -0.0017 28 1 0.8387 -2.6156 -0.4400 29 1 2.5340 -3.1336 -0.6007 30 1 2.8077 -3.0013 1.8602 31 1 1.1123 -2.4834 2.0210 32 1 1.1692 -4.9138 0.5826 33 1 0.9623 -6.8191 4.5733 34 1 -0.2036 -11.0054 5.7593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401757554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:42 Heat of formation + Delta-G solvation = -33.573641 kcal Electronic energy + Delta-G solvation = -19145.931589 eV Core-core repulsion = 15886.117271 eV Total energy + Delta-G solvation = -3259.814318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.90 seconds Orbital eigenvalues (eV) -43.02981 -41.39587 -39.30461 -36.95253 -36.14342 -34.90113 -33.98962 -33.09367 -29.21231 -27.85820 -27.74626 -25.28203 -23.40503 -22.37048 -21.48487 -21.12906 -20.49165 -18.76094 -18.02240 -17.61549 -16.96032 -16.93331 -16.66125 -16.04628 -15.90781 -15.33469 -15.07303 -14.74490 -14.62569 -14.38398 -14.27716 -13.93582 -13.78454 -13.36594 -13.09495 -13.02890 -12.55979 -12.52421 -12.48994 -11.99911 -11.71132 -10.93741 -10.50846 -10.47913 -10.36216 -10.28180 -9.33225 -8.62710 -6.16578 0.51079 1.01992 1.29340 1.32920 1.38972 1.69386 1.97033 2.09994 2.19904 2.28140 3.04741 3.07603 3.72409 3.83217 3.90325 3.92932 3.93801 4.04026 4.38578 4.43134 4.50088 4.67064 4.72420 4.90665 4.94327 5.21940 5.26560 5.43175 5.73866 5.77849 6.06584 6.30687 6.37307 6.58901 6.91121 7.12383 7.14452 7.61713 8.51710 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.041462 B = 0.003371 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.154189 B = 8303.694651 C = 8518.180143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.458 5.458 3 C 0.181 3.819 4 N -0.539 5.539 5 C -0.044 4.044 6 C -0.025 4.025 7 C -0.042 4.042 8 C 0.129 3.871 9 N -0.689 5.689 10 C 0.523 3.477 11 O -0.563 6.563 12 C 0.407 3.593 13 O -0.602 6.602 14 N -0.532 5.532 15 C -0.339 4.339 16 H 0.079 0.921 17 C 0.011 3.989 18 N -0.892 5.892 19 Si 0.947 3.053 20 H -0.252 1.252 21 H -0.258 1.258 22 H -0.249 1.249 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.238 0.762 27 H 0.173 0.827 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.420 0.580 33 H 0.393 0.607 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.560 21.912 -7.779 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.140 5.140 3 C -0.101 4.101 4 N -0.257 5.257 5 C -0.192 4.192 6 C -0.141 4.141 7 C -0.081 4.081 8 C 0.006 3.994 9 N -0.343 5.343 10 C 0.305 3.695 11 O -0.442 6.442 12 C 0.192 3.808 13 O -0.489 6.489 14 N -0.171 5.171 15 C -0.468 4.468 16 H 0.097 0.903 17 C -0.194 4.194 18 N -0.529 5.529 19 Si 0.767 3.233 20 H -0.176 1.176 21 H -0.182 1.182 22 H -0.173 1.173 23 H 0.102 0.898 24 H 0.133 0.867 25 H 0.113 0.887 26 H 0.254 0.746 27 H 0.190 0.810 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.258 0.742 33 H 0.229 0.771 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.032 22.281 -7.629 23.574 hybrid contribution -0.566 -0.766 0.654 1.156 sum 0.466 21.514 -6.975 22.622 Atomic orbital electron populations 1.22385 0.74304 1.06544 1.04779 1.45555 1.09003 1.06054 1.53398 1.25606 0.85081 0.94873 1.04556 1.70248 1.21449 1.12652 1.21360 1.22370 0.96816 0.91282 1.08748 1.21011 0.91194 0.89957 1.11946 1.20106 1.04561 0.88263 0.95150 1.21434 1.00558 0.79374 0.98054 1.45565 1.66856 1.12950 1.08892 1.19864 0.78054 0.86867 0.84670 1.90692 1.50842 1.70588 1.32047 1.19632 0.88388 0.88180 0.84635 1.90605 1.56381 1.70749 1.31146 1.41711 1.56025 1.11129 1.08209 1.19174 1.44750 0.86367 0.96521 0.90267 1.26069 0.95200 0.95937 1.02160 1.69547 1.42705 1.10064 1.30604 0.85604 0.80456 0.79468 0.77785 1.17554 1.18154 1.17284 0.89847 0.86702 0.88687 0.74617 0.81016 0.88377 0.87248 0.91453 0.91763 0.74217 0.77132 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 11.01 127.77 1.41 1.81 16 2 N -0.46 -6.68 3.15 -537.89 -1.70 -8.38 16 3 C 0.18 2.97 12.56 180.26 2.26 5.24 16 4 N -0.54 -12.79 11.25 -200.32 -2.25 -15.04 16 5 C -0.04 -0.98 11.79 83.53 0.98 0.01 16 6 C -0.03 -0.45 6.21 40.95 0.25 -0.20 16 7 C -0.04 -0.63 5.67 29.85 0.17 -0.46 16 8 C 0.13 2.82 5.66 86.38 0.49 3.31 16 9 N -0.69 -19.40 5.55 -465.00 -2.58 -21.98 16 10 C 0.52 20.18 7.87 87.08 0.69 20.87 16 11 O -0.56 -23.40 16.47 -3.52 -0.06 -23.46 16 12 C 0.41 19.29 7.82 87.08 0.68 19.97 16 13 O -0.60 -31.34 16.03 -3.74 -0.06 -31.40 16 14 N -0.53 -26.73 5.06 -308.88 -1.56 -28.29 16 15 C -0.34 -19.34 10.16 84.35 0.86 -18.48 16 16 H 0.08 5.18 7.36 -2.91 -0.02 5.16 16 17 C 0.01 0.61 5.51 85.14 0.47 1.08 16 18 N -0.89 -50.32 13.94 21.77 0.30 -50.02 16 19 Si 0.95 39.00 27.74 68.60 1.90 40.90 16 20 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.25 -9.74 6.53 99.48 0.65 -9.09 16 23 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.09 0.51 7.11 -2.39 -0.02 0.49 16 26 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.10 1.12 7.09 -2.39 -0.02 1.10 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.42 10.69 7.93 -92.71 -0.74 9.95 16 33 H 0.39 18.11 5.22 -92.70 -0.48 17.62 16 34 H 0.29 14.77 8.30 -92.70 -0.77 14.00 16 Total: -1.00 -75.60 304.01 2.13 -73.47 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.12 Total: 31.06 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 8.26 Total: 33.13 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -7.79 Total: -123.71 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.12 Total: -54.86 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Total: -75.60 2.13 -73.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401757554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.895 kcal (2) G-P(sol) polarization free energy of solvation -75.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds