Wall clock time and date at job start Mon Mar 30 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46507 * 119.99999 * 2 1 4 4 C 1.50704 * 109.46767 * 269.99609 * 3 2 1 5 5 H 1.07991 * 120.00175 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99315 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00596 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99620 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47127 * 120.00105 * 8 6 4 11 11 H 1.48496 * 109.47310 * 240.00383 * 8 6 4 12 12 C 1.34778 * 120.00141 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00026 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99852 * 0.02562 * 12 2 1 15 15 C 1.50703 * 109.47070 * 179.97438 * 14 12 2 16 16 C 1.38140 * 120.01263 * 265.00519 * 15 14 12 17 17 C 1.38228 * 120.09587 * 180.27952 * 16 15 14 18 18 C 1.38535 * 120.12328 * 359.48503 * 17 16 15 19 19 F 1.35107 * 119.98557 * 180.26104 * 18 17 16 20 20 C 1.38297 * 120.02499 * 0.51198 * 18 17 16 21 21 C 1.38894 * 119.90309 * 359.74412 * 20 18 17 22 22 N 1.39662 * 120.06208 * 180.02562 * 21 20 18 23 23 H 1.08999 * 109.47400 * 270.00419 * 1 2 3 24 24 H 1.09006 * 109.47023 * 30.00489 * 1 2 3 25 25 H 1.09000 * 109.47166 * 149.99727 * 1 2 3 26 26 H 1.09001 * 109.46953 * 29.99612 * 3 2 1 27 27 H 1.09000 * 109.46992 * 149.99638 * 3 2 1 28 28 H 0.97000 * 120.00584 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47067 * 60.00120 * 14 12 2 30 30 H 1.08996 * 109.47688 * 300.00009 * 14 12 2 31 31 H 1.08002 * 119.94824 * 359.97438 * 16 15 14 32 32 H 1.08001 * 119.93389 * 179.74730 * 17 16 15 33 33 H 1.08006 * 120.05116 * 179.77078 * 20 18 17 34 34 H 0.97000 * 119.99664 * 179.97438 * 22 21 20 35 35 H 0.97001 * 120.00026 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6181 -0.6732 8 14 3.4381 3.4167 -3.4339 9 1 2.8611 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6681 11 1 4.9007 3.5255 -3.6666 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3647 -3.6177 0.0005 16 6 2.7346 -4.2106 -1.1911 17 6 3.6283 -5.2651 -1.1926 18 6 4.1642 -5.7240 -0.0004 19 9 5.0415 -6.7514 -0.0056 20 6 3.7975 -5.1342 1.1956 21 6 2.8955 -4.0779 1.1988 22 7 2.5233 -3.4795 2.4046 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6083 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0295 4.4444 -0.8504 29 1 0.7591 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8902 31 1 2.3210 -3.8528 -2.1225 32 1 3.9125 -5.7293 -2.1254 33 1 4.2122 -5.4940 2.1256 34 1 1.8936 -2.7417 2.4057 35 1 2.8945 -3.8017 3.2408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403121247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:17 Heat of formation + Delta-G solvation = -57.136921 kcal Electronic energy + Delta-G solvation = -19808.960312 eV Core-core repulsion = 16528.204252 eV Total energy + Delta-G solvation = -3280.756060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -48.76869 -39.83543 -38.32621 -34.78923 -34.39576 -32.76578 -32.09066 -29.15933 -28.13229 -26.72658 -25.54009 -23.00512 -22.56453 -21.24562 -18.43991 -17.79845 -17.38465 -16.53933 -16.30571 -15.73587 -15.43173 -15.24086 -15.11745 -14.74410 -14.52361 -14.05668 -13.51283 -13.10889 -12.98807 -12.53885 -12.31685 -12.21599 -11.84081 -11.65853 -11.52363 -11.16873 -11.07048 -10.85956 -10.58844 -10.47427 -10.16354 -9.61757 -8.99773 -8.52306 -8.44775 -7.64925 -7.49630 -6.05418 -4.10089 1.32975 1.61089 3.29169 3.36315 3.38953 3.44493 3.66295 3.80564 4.11750 4.44718 4.51405 4.83985 4.92032 5.13776 5.25119 5.32370 5.33921 5.47573 5.59285 5.68269 5.85722 5.89317 6.08982 6.16226 6.19463 6.34633 6.59458 6.92157 7.04325 7.42091 7.44782 7.53158 7.72549 7.91194 8.22452 8.40840 8.89998 9.10462 9.55359 11.02713 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024075 B = 0.004758 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.762506 B = 5882.898630 C = 6394.785475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.500 3.500 13 O -0.528 6.528 14 C -0.095 4.095 15 C -0.143 4.143 16 C -0.032 4.032 17 C -0.212 4.212 18 C 0.139 3.861 19 F -0.145 7.145 20 C -0.238 4.238 21 C 0.261 3.739 22 N -0.868 5.868 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.400 0.600 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -15.565 4.081 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.338 5.338 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.286 3.714 13 O -0.404 6.404 14 C -0.135 4.135 15 C -0.148 4.148 16 C -0.051 4.051 17 C -0.233 4.233 18 C 0.119 3.881 19 F -0.123 7.123 20 C -0.261 4.261 21 C 0.155 3.845 22 N -0.406 5.406 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.230 0.770 35 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.228 -15.409 4.109 17.121 hybrid contribution 0.240 0.517 -0.644 0.860 sum -5.988 -14.893 3.465 16.421 Atomic orbital electron populations 1.21648 0.81589 1.02659 1.00315 1.48185 1.06052 1.07818 1.71752 1.19279 0.92502 0.78110 0.97506 1.21469 1.36422 1.06177 0.92336 0.92429 1.24937 0.95345 0.96418 0.97427 1.69934 1.38488 1.14332 1.30690 0.86449 0.78123 0.78285 0.84603 1.19792 1.20973 1.20858 1.20284 0.88255 0.84758 0.78114 1.90703 1.13702 1.86990 1.49043 1.20567 0.97316 0.91628 1.04038 1.18889 1.03884 0.99974 0.92022 1.20600 0.94390 0.92934 0.97127 1.20772 1.03652 1.02069 0.96791 1.17307 0.90070 0.86471 0.94249 1.91463 1.66801 1.56617 1.97462 1.20299 1.06107 1.02100 0.97631 1.17148 0.90935 0.90051 0.86397 1.42480 1.52485 1.40160 1.05464 0.93847 0.90758 0.92432 0.95103 0.93926 0.92776 0.88336 0.89477 0.85209 0.85309 0.85295 0.77033 0.77397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.24 59.84 0.61 1.82 16 2 N -0.61 -12.31 2.86 -182.95 -0.52 -12.84 16 3 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 4 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.62 13.28 55.43 0.74 -25.89 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.50 9.93 7.67 -10.99 -0.08 9.84 16 13 O -0.53 -13.10 15.61 5.56 0.09 -13.01 16 14 C -0.10 -1.33 3.81 -29.04 -0.11 -1.44 16 15 C -0.14 -2.09 4.39 -104.41 -0.46 -2.55 16 16 C -0.03 -0.45 9.67 -39.62 -0.38 -0.83 16 17 C -0.21 -2.91 10.02 -39.48 -0.40 -3.30 16 18 C 0.14 1.98 7.30 -39.45 -0.29 1.69 16 19 F -0.14 -2.05 17.27 2.25 0.04 -2.01 16 20 C -0.24 -3.24 9.87 -39.32 -0.39 -3.62 16 21 C 0.26 3.64 6.73 -83.80 -0.56 3.07 16 22 N -0.87 -9.83 8.99 32.40 0.29 -9.54 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 25 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 26 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 27 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.10 1.18 7.31 -51.93 -0.38 0.80 16 30 H 0.09 0.96 6.78 -51.93 -0.35 0.61 16 31 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.40 4.40 6.94 -40.82 -0.28 4.12 16 35 H 0.40 3.53 8.84 -40.82 -0.36 3.17 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -34.19 306.90 -6.44 -40.63 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.17 Total: 3.70 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.51 Total: -2.52 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.51 Total: -48.26 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.19 -6.44 -40.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403121247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.509 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds