Wall clock time and date at job start Mon Mar 30 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46507 * 119.99999 * 2 1 4 4 C 1.50704 * 109.46767 * 269.99609 * 3 2 1 5 5 H 1.07991 * 120.00175 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99315 * 179.97438 * 4 3 2 7 7 N 1.31505 * 120.00596 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99620 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47127 * 120.00105 * 8 6 4 11 11 H 1.48496 * 109.47310 * 240.00383 * 8 6 4 12 12 C 1.34778 * 120.00141 * 179.97438 * 2 1 3 13 13 O 1.21280 * 120.00026 * 180.02562 * 12 2 1 14 14 C 1.50696 * 119.99852 * 0.02562 * 12 2 1 15 15 C 1.50703 * 109.47070 * 179.97438 * 14 12 2 16 16 C 1.38140 * 120.01263 * 265.00519 * 15 14 12 17 17 C 1.38228 * 120.09587 * 180.27952 * 16 15 14 18 18 C 1.38535 * 120.12328 * 359.48503 * 17 16 15 19 19 F 1.35107 * 119.98557 * 180.26104 * 18 17 16 20 20 C 1.38297 * 120.02499 * 0.51198 * 18 17 16 21 21 C 1.38894 * 119.90309 * 359.74412 * 20 18 17 22 22 N 1.39662 * 120.06208 * 180.02562 * 21 20 18 23 23 H 1.08999 * 109.47400 * 270.00419 * 1 2 3 24 24 H 1.09006 * 109.47023 * 30.00489 * 1 2 3 25 25 H 1.09000 * 109.47166 * 149.99727 * 1 2 3 26 26 H 1.09001 * 109.46953 * 29.99612 * 3 2 1 27 27 H 1.09000 * 109.46992 * 149.99638 * 3 2 1 28 28 H 0.97000 * 120.00584 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47067 * 60.00120 * 14 12 2 30 30 H 1.08996 * 109.47688 * 300.00009 * 14 12 2 31 31 H 1.08002 * 119.94824 * 359.97438 * 16 15 14 32 32 H 1.08001 * 119.93389 * 179.74730 * 17 16 15 33 33 H 1.08006 * 120.05116 * 179.77078 * 20 18 17 34 34 H 0.97000 * 119.99664 * 179.97438 * 22 21 20 35 35 H 0.97001 * 120.00026 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6181 -0.6732 8 14 3.4381 3.4167 -3.4339 9 1 2.8611 2.4162 -4.3673 10 1 2.8000 4.7371 -3.6681 11 1 4.9007 3.5255 -3.6666 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3647 -3.6177 0.0005 16 6 2.7346 -4.2106 -1.1911 17 6 3.6283 -5.2651 -1.1926 18 6 4.1642 -5.7240 -0.0004 19 9 5.0415 -6.7514 -0.0056 20 6 3.7975 -5.1342 1.1956 21 6 2.8955 -4.0779 1.1988 22 7 2.5233 -3.4795 2.4046 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6083 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0295 4.4444 -0.8504 29 1 0.7591 -2.5302 -0.8897 30 1 0.7584 -2.5299 0.8902 31 1 2.3210 -3.8528 -2.1225 32 1 3.9125 -5.7293 -2.1254 33 1 4.2122 -5.4940 2.1256 34 1 1.8936 -2.7417 2.4057 35 1 2.8945 -3.8017 3.2408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403121247.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:12 Heat of formation + Delta-G solvation = -80.392741 kcal Electronic energy + Delta-G solvation = -19809.968760 eV Core-core repulsion = 16528.204252 eV Total energy + Delta-G solvation = -3281.764508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -49.85524 -41.09222 -39.68549 -36.49606 -35.38115 -34.74009 -33.36352 -30.37389 -29.72632 -27.97587 -27.08241 -24.79267 -23.66447 -22.44872 -19.93990 -18.85334 -18.67541 -18.36352 -17.78455 -17.17554 -16.53452 -16.52635 -16.35697 -16.12983 -15.88714 -15.57633 -14.55473 -14.49035 -14.37746 -14.00365 -13.70085 -13.53810 -13.40425 -13.14145 -12.93204 -12.74259 -12.59373 -12.37259 -12.18943 -12.08020 -11.65474 -11.47123 -10.64404 -10.59076 -9.62880 -9.35171 -8.49787 -8.21567 -6.36168 0.24907 0.57383 1.36432 1.39123 1.50514 1.92167 2.33518 2.45469 2.76061 2.93190 3.08196 3.47639 3.79221 3.84577 4.03354 4.14890 4.33386 4.43698 4.53301 4.64376 4.78381 4.85835 5.01782 5.03980 5.07110 5.15715 5.26942 5.31673 5.54755 5.59017 5.87858 5.91923 6.08331 6.47455 6.72799 6.86509 6.89363 7.30779 7.57638 8.85290 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.024075 B = 0.004758 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.762506 B = 5882.898630 C = 6394.785475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.612 5.612 3 C 0.259 3.741 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.284 1.284 12 C 0.494 3.506 13 O -0.588 6.588 14 C -0.079 4.079 15 C -0.164 4.164 16 C -0.040 4.040 17 C -0.221 4.221 18 C 0.125 3.875 19 F -0.147 7.147 20 C -0.246 4.246 21 C 0.254 3.746 22 N -0.860 5.860 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.022 0.978 27 H -0.005 1.005 28 H 0.266 0.734 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.403 0.597 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -16.455 3.353 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.210 1.210 12 C 0.283 3.717 13 O -0.469 6.469 14 C -0.118 4.118 15 C -0.169 4.169 16 C -0.059 4.059 17 C -0.241 4.241 18 C 0.106 3.894 19 F -0.126 7.126 20 C -0.270 4.270 21 C 0.146 3.854 22 N -0.399 5.399 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.013 0.987 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.233 0.767 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.962 -16.316 3.406 18.472 hybrid contribution 0.764 0.774 -0.352 1.143 sum -7.198 -15.542 3.053 17.398 Atomic orbital electron populations 1.21981 0.77869 1.04112 1.02760 1.48191 1.08337 1.06204 1.71613 1.18715 0.91043 0.80666 0.95810 1.21762 1.36509 1.06334 0.93229 0.92788 1.25847 0.95006 0.96548 1.01812 1.70050 1.39159 1.14836 1.32960 0.85394 0.77770 0.78452 0.79358 1.18964 1.19433 1.21011 1.21322 0.87896 0.86205 0.76248 1.90673 1.16617 1.87961 1.51609 1.20532 0.96931 0.87308 1.07029 1.19104 1.04792 1.00465 0.92524 1.20877 0.94354 0.92931 0.97726 1.21002 1.03585 1.02194 0.97361 1.17538 0.90332 0.86694 0.94881 1.91452 1.66922 1.56739 1.97508 1.20522 1.06146 1.02119 0.98228 1.17317 0.90851 0.90147 0.87111 1.42466 1.52218 1.39842 1.05333 0.90856 0.91872 0.88449 0.95979 0.98657 0.92495 0.85503 0.85982 0.83743 0.83770 0.83723 0.76742 0.76097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 10.24 127.77 1.31 3.30 16 2 N -0.61 -24.42 2.86 -851.11 -2.43 -26.85 16 3 C 0.26 13.77 5.16 85.63 0.44 14.21 16 4 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 5 H 0.05 3.05 7.81 -2.92 -0.02 3.03 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -56.36 13.28 21.45 0.28 -56.07 16 8 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.49 19.18 7.67 87.66 0.67 19.85 16 13 O -0.59 -29.71 15.61 -3.03 -0.05 -29.76 16 14 C -0.08 -1.95 3.81 29.10 0.11 -1.84 16 15 C -0.16 -4.50 4.39 -19.73 -0.09 -4.59 16 16 C -0.04 -1.07 9.67 22.24 0.22 -0.85 16 17 C -0.22 -5.81 10.02 22.34 0.22 -5.58 16 18 C 0.13 3.47 7.30 22.35 0.16 3.63 16 19 F -0.15 -4.08 17.27 44.97 0.78 -3.30 16 20 C -0.25 -6.46 9.87 22.44 0.22 -6.23 16 21 C 0.25 6.69 6.73 38.21 0.26 6.95 16 22 N -0.86 -18.00 8.99 -51.39 -0.46 -18.46 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.83 8.07 -2.38 -0.02 1.82 16 25 H 0.10 1.82 6.44 -2.39 -0.02 1.81 16 26 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 27 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.13 2.47 7.31 -2.39 -0.02 2.46 16 30 H 0.12 2.18 6.78 -2.39 -0.02 2.16 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.40 8.00 6.94 -92.71 -0.64 7.36 16 35 H 0.41 6.60 8.84 -92.71 -0.82 5.78 16 Total: -1.00 -76.65 306.90 4.05 -72.61 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.33 Total: 15.87 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.23 Total: -0.96 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -2.61 Total: -101.39 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -76.65 4.05 -72.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403121247.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.788 kcal (2) G-P(sol) polarization free energy of solvation -76.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds