Wall clock time and date at job start Mon Mar 30 2020 04:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47699 * 2 1 4 4 C 1.33803 * 122.73965 * 89.99195 * 3 2 1 5 5 O 1.21233 * 125.30948 * 0.02562 * 4 3 2 6 6 C 1.51212 * 109.38781 * 179.74924 * 4 3 2 7 7 H 1.09003 * 112.71604 * 122.40612 * 6 4 3 8 8 C 1.54303 * 109.20724 * 249.12323 * 6 4 3 9 9 N 1.48104 * 104.72766 * 86.17424 * 8 6 4 10 10 C 1.34783 * 127.84374 * 219.80788 * 9 8 6 11 11 O 1.21686 * 119.99584 * 180.02562 * 10 9 8 12 12 C 1.46370 * 119.99852 * 0.02696 * 10 9 8 13 13 H 1.07999 * 120.00120 * 0.02562 * 12 10 9 14 14 C 1.40055 * 119.99763 * 179.97438 * 12 10 9 15 15 N 1.30667 * 119.99778 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99810 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47320 * 59.99858 * 16 14 12 18 18 H 1.48492 * 109.47063 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47081 * 300.00179 * 16 14 12 20 20 C 1.48103 * 104.31242 * 39.83144 * 9 8 6 21 21 C 1.54302 * 104.73394 * 320.17796 * 20 9 8 22 22 H 1.09001 * 113.18924 * 147.35155 * 21 20 9 23 23 C 1.33809 * 122.73622 * 270.19376 * 3 2 1 24 24 O 1.21220 * 125.30971 * 359.97438 * 23 3 2 25 25 H 1.08996 * 109.47310 * 300.00470 * 1 2 3 26 26 H 1.09001 * 109.47085 * 60.00158 * 1 2 3 27 27 H 1.08997 * 109.47396 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47310 * 239.99530 * 2 1 3 29 29 H 1.09010 * 109.46847 * 119.99760 * 2 1 3 30 30 H 1.08998 * 110.38874 * 204.98534 * 8 6 4 31 31 H 1.08999 * 110.38610 * 327.36155 * 8 6 4 32 32 H 0.97005 * 119.99431 * 179.97438 * 15 14 12 33 33 H 1.08997 * 110.38617 * 201.36975 * 20 9 8 34 34 H 1.09000 * 110.48320 * 79.03759 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2596 2.0634 1.1255 5 8 2.1087 1.6361 2.2499 6 6 2.7561 3.4484 0.7763 7 1 2.1357 4.2375 1.2012 8 6 4.2438 3.5680 1.1677 9 7 4.9844 3.0440 -0.0030 10 6 6.0855 2.2667 -0.0046 11 8 6.5813 1.9163 -1.0592 12 6 6.6849 1.8441 1.2621 13 1 6.2446 2.1548 2.1981 14 6 7.8287 1.0359 1.2604 15 7 8.3611 0.6597 0.1280 16 14 8.5932 0.4960 2.8770 17 1 7.6014 -0.2877 3.6563 18 1 9.7856 -0.3458 2.6039 19 1 9.0006 1.6928 3.6561 20 6 4.2408 3.5686 -1.1714 21 6 2.7540 3.4491 -0.7763 22 1 2.1328 4.2387 -1.1989 23 6 2.2561 2.0646 -1.1256 24 8 2.1019 1.6385 -2.2498 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.5065 4.6104 1.3477 31 1 4.4537 2.9647 2.0509 32 1 9.1536 0.1002 0.1268 33 1 4.4482 2.9657 -2.0554 34 1 4.5026 4.6109 -1.3536 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409432196.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:24 Heat of formation + Delta-G solvation = -90.072930 kcal Electronic energy + Delta-G solvation = -21063.210036 eV Core-core repulsion = 17768.652974 eV Total energy + Delta-G solvation = -3294.557062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.08073 -38.38059 -38.02436 -35.90609 -35.52634 -32.68266 -32.27991 -29.90548 -29.12311 -26.51148 -24.53108 -24.13871 -22.63274 -20.99639 -19.44639 -19.23993 -17.41791 -16.74568 -16.29715 -16.20240 -15.65072 -15.16723 -14.50821 -14.33445 -14.00176 -13.95720 -13.88351 -13.15976 -12.99659 -12.43865 -12.36208 -12.11441 -11.75380 -11.67519 -11.60874 -11.28656 -11.22346 -11.09493 -11.00218 -10.43010 -10.29503 -10.15237 -9.72142 -9.61188 -8.93720 -7.80907 -7.56716 -6.30401 -4.76352 1.72590 2.66266 2.92611 3.11737 3.16716 3.18606 3.96759 4.05931 4.27699 4.32837 4.43226 4.49855 4.83954 4.98386 5.10211 5.17880 5.21849 5.46445 5.56029 5.57627 5.63698 5.72729 5.87008 5.96913 6.03785 6.12400 6.19403 6.21859 6.94799 7.02825 7.34710 7.49933 7.93805 7.97522 8.24503 8.91462 9.29639 10.43426 10.62893 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.007024 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.189675 B = 3985.382434 C = 4300.964151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.568 5.568 4 C 0.541 3.459 5 O -0.483 6.483 6 C -0.140 4.140 7 H 0.136 0.864 8 C 0.128 3.872 9 N -0.649 5.649 10 C 0.575 3.425 11 O -0.568 6.568 12 C -0.537 4.537 13 H 0.071 0.929 14 C 0.087 3.913 15 N -0.765 5.765 16 Si 0.909 3.091 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.266 1.266 20 C 0.122 3.878 21 C -0.138 4.138 22 H 0.136 0.864 23 C 0.540 3.460 24 O -0.484 6.484 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.271 0.729 33 H 0.085 0.915 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 4.787 2.390 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.310 5.310 4 C 0.330 3.670 5 O -0.355 6.355 6 C -0.163 4.163 7 H 0.154 0.846 8 C 0.003 3.997 9 N -0.389 5.389 10 C 0.383 3.617 11 O -0.449 6.449 12 C -0.574 4.574 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.394 5.394 16 Si 0.734 3.266 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.003 4.003 21 C -0.161 4.161 22 H 0.153 0.847 23 C 0.330 3.670 24 O -0.356 6.356 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.820 3.867 1.686 13.497 hybrid contribution 0.215 -0.315 0.826 0.910 sum -12.605 3.552 2.512 13.335 Atomic orbital electron populations 1.22078 0.94721 1.02948 1.02396 1.21712 0.95100 0.80991 1.04929 1.46643 1.59435 1.15576 1.09356 1.20616 0.74410 0.88234 0.83710 1.90728 1.49186 1.74278 1.21315 1.23247 1.01496 0.95745 0.95774 0.84600 1.21866 0.85220 1.00189 0.92453 1.49493 1.30539 1.55365 1.03548 1.18088 0.76473 0.76190 0.90978 1.90642 1.61788 1.58535 1.33977 1.20815 1.11971 1.33233 0.91364 0.91124 1.25728 0.96076 0.94255 0.97268 1.70000 1.17074 1.25819 1.26464 0.86392 0.78779 0.79257 0.82207 1.19126 1.20412 1.19049 1.21758 0.85402 0.99982 0.93155 1.23205 1.01313 0.95701 0.95864 0.84666 1.20635 0.74413 0.88269 0.83722 1.90725 1.49137 1.74335 1.21412 0.92149 0.92183 0.90780 0.88961 0.88840 0.90878 0.89053 0.91802 0.89637 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.09 1.35 6.26 -4.04 -0.03 1.32 16 3 N -0.57 -9.18 2.55 -115.46 -0.29 -9.47 16 4 C 0.54 8.77 7.18 -11.17 -0.08 8.69 16 5 O -0.48 -8.86 17.47 5.60 0.10 -8.76 16 6 C -0.14 -1.86 4.18 -89.64 -0.37 -2.23 16 7 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 8 C 0.13 2.12 6.28 -2.48 -0.02 2.10 16 9 N -0.65 -14.00 3.31 -171.14 -0.57 -14.57 16 10 C 0.57 16.11 7.84 -12.99 -0.10 16.00 16 11 O -0.57 -18.31 15.28 5.20 0.08 -18.23 16 12 C -0.54 -14.93 9.07 -35.63 -0.32 -15.25 16 13 H 0.07 1.81 6.50 -52.49 -0.34 1.46 16 14 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 15 N -0.77 -22.73 11.83 55.55 0.66 -22.07 16 16 Si 0.91 20.04 29.56 -169.99 -5.02 15.02 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C 0.12 2.14 6.46 -2.48 -0.02 2.12 16 21 C -0.14 -1.88 4.18 -89.64 -0.37 -2.26 16 22 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 23 C 0.54 9.01 7.18 -11.16 -0.08 8.93 16 24 O -0.48 -9.25 17.47 5.61 0.10 -9.16 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.36 7.83 -51.93 -0.41 0.96 16 29 H 0.09 1.36 7.82 -51.92 -0.41 0.95 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.68 6.46 -51.93 -0.34 1.34 16 32 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 33 H 0.09 1.76 7.65 -51.93 -0.40 1.37 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 294.70 15.07 4.44 4.44 Total: -1.00 -36.45 294.70 -5.60 -42.04 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.98 Total: 0.48 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: -1.11 Total: 20.28 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.20 Total: -46.11 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: 0.28 Total: -36.15 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -36.45 -5.60 -42.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409432196.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.028 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds