Wall clock time and date at job start Mon Mar 30 2020 04:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46862 * 2 1 4 4 C 1.37291 * 123.62592 * 90.00262 * 3 2 1 5 5 O 1.21233 * 127.36363 * 12.14036 * 4 3 2 6 6 C 1.43769 * 105.26323 * 192.40546 * 4 3 2 7 7 H 1.09005 * 101.12383 * 73.07955 * 6 4 3 8 8 C 1.47292 * 142.76488 * 197.04162 * 6 4 3 9 9 N 1.49916 * 103.09985 * 171.97836 * 8 6 4 10 10 C 1.34782 * 126.00751 * 157.83132 * 9 8 6 11 11 O 1.21687 * 119.99810 * 179.97438 * 10 9 8 12 12 C 1.46372 * 119.99886 * 0.02562 * 10 9 8 13 13 H 1.08005 * 120.00161 * 359.97438 * 12 10 9 14 14 C 1.40048 * 119.99976 * 180.02562 * 12 10 9 15 15 N 1.30669 * 120.00143 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99802 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47742 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47330 * 120.00289 * 16 14 12 19 19 H 1.48506 * 109.46873 * 239.99487 * 16 14 12 20 20 C 1.48951 * 107.98881 * 337.83503 * 9 8 6 21 21 C 1.51830 * 105.88514 * 352.69439 * 20 9 8 22 22 H 1.08995 * 112.00202 * 271.82062 * 21 20 9 23 23 C 1.36657 * 123.61732 * 269.95711 * 3 2 1 24 24 O 1.21225 * 126.87968 * 14.95588 * 23 3 2 25 25 H 1.09003 * 109.47410 * 60.00230 * 1 2 3 26 26 H 1.08996 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47392 * 300.00375 * 1 2 3 28 28 H 1.08993 * 109.46937 * 239.99664 * 2 1 3 29 29 H 1.09000 * 109.46919 * 119.99665 * 2 1 3 30 30 H 1.08999 * 110.31928 * 53.65117 * 8 6 4 31 31 H 1.09000 * 110.80754 * 290.53241 * 8 6 4 32 32 H 0.96998 * 120.00489 * 180.02562 * 15 14 12 33 33 H 1.09003 * 110.16616 * 233.59760 * 20 9 8 34 34 H 1.08996 * 110.17049 * 111.80535 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2717 2.0980 1.1432 5 8 2.3372 1.6751 2.2775 6 6 2.4366 3.4584 0.7082 7 1 1.4076 3.7298 0.4720 8 6 2.9635 4.7682 1.1282 9 7 2.8599 5.5921 -0.1200 10 6 2.8133 6.9378 -0.1794 11 8 2.7292 7.4966 -1.2571 12 6 2.8651 7.7271 1.0522 13 1 2.9402 7.2311 2.0087 14 6 2.8161 9.1253 0.9904 15 7 2.7248 9.7254 -0.1667 16 14 2.8815 10.1324 2.5623 17 1 2.9829 9.2211 3.7304 18 1 4.0659 11.0275 2.5279 19 1 1.6469 10.9496 2.6783 20 6 2.8173 4.6623 -1.2828 21 6 3.0825 3.2781 -0.7180 22 1 4.1477 3.0504 -0.6785 23 6 2.2713 2.0943 -1.1380 24 8 1.9103 1.8216 -2.2627 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0024 4.6745 1.4444 31 1 2.3528 5.1940 1.9243 32 1 2.6913 10.6939 -0.2095 33 1 3.5897 4.9278 -2.0047 34 1 1.8349 4.6942 -1.7538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409432197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:26 Heat of formation + Delta-G solvation = -54.748539 kcal Electronic energy + Delta-G solvation = -20389.342800 eV Core-core repulsion = 17096.317519 eV Total energy + Delta-G solvation = -3293.025281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.46540 -38.64933 -38.32603 -36.23939 -35.75449 -32.86423 -32.49022 -29.80645 -29.37435 -26.52080 -25.12285 -24.49134 -22.35386 -21.21743 -19.37109 -18.93340 -18.03599 -16.98507 -16.78455 -15.96197 -15.55892 -15.41141 -14.88608 -14.64083 -14.29571 -14.05340 -13.90892 -13.31701 -13.05244 -12.91324 -12.57674 -12.51854 -11.89111 -11.58330 -11.51208 -11.42440 -11.20364 -10.99757 -10.78875 -10.51530 -10.32953 -10.20375 -10.09850 -9.81997 -8.95248 -7.80264 -7.50872 -6.30586 -4.76206 1.39598 2.22276 2.34443 3.08501 3.17223 3.21493 3.35339 3.83871 4.04922 4.14205 4.45565 4.63576 4.73827 4.83339 4.89195 4.96784 5.02201 5.21593 5.26187 5.50229 5.61902 5.64507 5.67681 5.87884 6.02799 6.14186 6.19111 6.29993 6.48272 6.91583 7.13811 7.34703 7.62639 7.91803 8.23079 8.91553 9.25792 10.43279 10.62833 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032466 B = 0.004997 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.246052 B = 5602.418480 C = 6177.280601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.602 5.602 4 C 0.585 3.415 5 O -0.469 6.469 6 C -0.186 4.186 7 H 0.105 0.895 8 C 0.168 3.832 9 N -0.648 5.648 10 C 0.573 3.427 11 O -0.568 6.568 12 C -0.537 4.537 13 H 0.073 0.927 14 C 0.087 3.913 15 N -0.766 5.766 16 Si 0.910 3.090 17 H -0.262 1.262 18 H -0.275 1.275 19 H -0.276 1.276 20 C 0.137 3.863 21 C -0.142 4.142 22 H 0.137 0.863 23 C 0.552 3.448 24 O -0.465 6.465 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.270 0.730 33 H 0.075 0.925 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -15.829 2.948 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.350 5.350 4 C 0.375 3.625 5 O -0.339 6.339 6 C -0.208 4.208 7 H 0.122 0.878 8 C 0.043 3.957 9 N -0.392 5.392 10 C 0.381 3.619 11 O -0.450 6.450 12 C -0.573 4.573 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.394 5.394 16 Si 0.734 3.266 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.201 1.201 20 C 0.013 3.987 21 C -0.163 4.163 22 H 0.154 0.846 23 C 0.341 3.659 24 O -0.334 6.334 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.117 -15.620 2.191 15.812 hybrid contribution -0.134 0.259 0.729 0.785 sum -1.251 -15.360 2.919 15.685 Atomic orbital electron populations 1.22151 0.94801 1.03001 1.02951 1.21661 0.95411 0.80477 1.04299 1.48464 1.62894 1.15503 1.08130 1.18430 0.73694 0.86835 0.83497 1.90759 1.46368 1.77885 1.18927 1.20993 1.05563 0.95517 0.98739 0.87781 1.20008 1.00863 0.84559 0.90235 1.50159 1.81316 1.05365 1.02324 1.18128 0.76412 0.76494 0.90884 1.90644 1.55190 1.67769 1.31376 1.20917 1.53789 0.90727 0.91899 0.90855 1.25741 0.92525 0.98149 0.96952 1.70015 1.34609 1.09836 1.24952 0.86269 0.78325 0.79845 0.82123 1.18579 1.20051 1.20107 1.20939 1.02100 0.84483 0.91175 1.23057 1.01819 0.95505 0.95957 0.84554 1.20590 0.78047 0.83917 0.83318 1.90751 1.50694 1.71631 1.20293 0.91763 0.90762 0.92113 0.89260 0.88880 0.91743 0.89287 0.91919 0.90634 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16 2 C 0.10 0.95 6.51 -4.04 -0.03 0.93 16 3 N -0.60 -7.13 2.73 -117.10 -0.32 -7.45 16 4 C 0.58 7.69 7.68 -12.95 -0.10 7.59 16 5 O -0.47 -7.11 17.76 5.60 0.10 -7.01 16 6 C -0.19 -2.58 3.28 -95.12 -0.31 -2.89 16 7 H 0.10 1.52 7.12 -51.93 -0.37 1.15 16 8 C 0.17 2.76 6.17 -4.88 -0.03 2.73 16 9 N -0.65 -13.72 3.41 -174.39 -0.59 -14.32 16 10 C 0.57 15.64 7.81 -12.99 -0.10 15.54 16 11 O -0.57 -17.89 15.38 5.20 0.08 -17.81 16 12 C -0.54 -14.39 9.03 -35.63 -0.32 -14.71 16 13 H 0.07 1.78 6.75 -52.48 -0.35 1.43 16 14 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 15 N -0.77 -22.21 11.83 55.55 0.66 -21.55 16 16 Si 0.91 19.36 29.56 -169.99 -5.02 14.34 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 20 C 0.14 2.43 6.51 -3.28 -0.02 2.41 16 21 C -0.14 -1.91 3.64 -90.41 -0.33 -2.24 16 22 H 0.14 1.55 8.14 -51.93 -0.42 1.12 16 23 C 0.55 7.39 7.58 -10.69 -0.08 7.30 16 24 O -0.46 -7.30 17.88 5.60 0.10 -7.20 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.09 0.78 7.95 -51.93 -0.41 0.37 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.48 7.36 -51.93 -0.38 1.10 16 32 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -33.98 296.38 -5.61 -39.59 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.03 Total: -0.80 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: -1.04 Total: 17.75 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.26 Total: -43.32 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: 0.28 Total: -32.03 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.98 -5.61 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409432197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.160 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds