Wall clock time and date at job start Mon Mar 30 2020 04:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46862 * 2 1 4 4 C 1.37291 * 123.62592 * 90.00262 * 3 2 1 5 5 O 1.21233 * 127.36363 * 12.14036 * 4 3 2 6 6 C 1.43769 * 105.26323 * 192.40546 * 4 3 2 7 7 H 1.09005 * 101.12383 * 73.07955 * 6 4 3 8 8 C 1.47292 * 142.76488 * 197.04162 * 6 4 3 9 9 N 1.49916 * 103.09985 * 171.97836 * 8 6 4 10 10 C 1.34782 * 126.00751 * 157.83132 * 9 8 6 11 11 O 1.21687 * 119.99810 * 179.97438 * 10 9 8 12 12 C 1.46372 * 119.99886 * 0.02562 * 10 9 8 13 13 H 1.08005 * 120.00161 * 359.97438 * 12 10 9 14 14 C 1.40048 * 119.99976 * 180.02562 * 12 10 9 15 15 N 1.30669 * 120.00143 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99802 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47742 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47330 * 120.00289 * 16 14 12 19 19 H 1.48506 * 109.46873 * 239.99487 * 16 14 12 20 20 C 1.48951 * 107.98881 * 337.83503 * 9 8 6 21 21 C 1.51830 * 105.88514 * 352.69439 * 20 9 8 22 22 H 1.08995 * 112.00202 * 271.82062 * 21 20 9 23 23 C 1.36657 * 123.61732 * 269.95711 * 3 2 1 24 24 O 1.21225 * 126.87968 * 14.95588 * 23 3 2 25 25 H 1.09003 * 109.47410 * 60.00230 * 1 2 3 26 26 H 1.08996 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47392 * 300.00375 * 1 2 3 28 28 H 1.08993 * 109.46937 * 239.99664 * 2 1 3 29 29 H 1.09000 * 109.46919 * 119.99665 * 2 1 3 30 30 H 1.08999 * 110.31928 * 53.65117 * 8 6 4 31 31 H 1.09000 * 110.80754 * 290.53241 * 8 6 4 32 32 H 0.96998 * 120.00489 * 180.02562 * 15 14 12 33 33 H 1.09003 * 110.16616 * 233.59760 * 20 9 8 34 34 H 1.08996 * 110.17049 * 111.80535 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2717 2.0980 1.1432 5 8 2.3372 1.6751 2.2775 6 6 2.4366 3.4584 0.7082 7 1 1.4076 3.7298 0.4720 8 6 2.9635 4.7682 1.1282 9 7 2.8599 5.5921 -0.1200 10 6 2.8133 6.9378 -0.1794 11 8 2.7292 7.4966 -1.2571 12 6 2.8651 7.7271 1.0522 13 1 2.9402 7.2311 2.0087 14 6 2.8161 9.1253 0.9904 15 7 2.7248 9.7254 -0.1667 16 14 2.8815 10.1324 2.5623 17 1 2.9829 9.2211 3.7304 18 1 4.0659 11.0275 2.5279 19 1 1.6469 10.9496 2.6783 20 6 2.8173 4.6623 -1.2828 21 6 3.0825 3.2781 -0.7180 22 1 4.1477 3.0504 -0.6785 23 6 2.2713 2.0943 -1.1380 24 8 1.9103 1.8216 -2.2627 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0024 4.6745 1.4444 31 1 2.3528 5.1940 1.9243 32 1 2.6913 10.6939 -0.2095 33 1 3.5897 4.9278 -2.0047 34 1 1.8349 4.6942 -1.7538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409432197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:26 Heat of formation + Delta-G solvation = -79.357982 kcal Electronic energy + Delta-G solvation = -20390.409946 eV Core-core repulsion = 17096.317519 eV Total energy + Delta-G solvation = -3294.092427 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.62608 -39.89768 -39.80089 -37.93039 -36.95790 -34.68039 -33.93398 -31.13103 -30.72015 -28.38848 -26.34046 -25.80252 -23.48862 -22.39109 -21.17567 -20.11718 -19.21455 -18.57616 -18.05090 -17.56443 -17.00239 -16.66508 -16.35732 -15.80204 -15.64809 -15.54981 -14.99737 -14.85001 -14.35982 -14.22967 -13.92601 -13.57935 -13.35937 -13.17172 -13.03430 -12.74558 -12.63079 -12.45108 -12.26340 -12.00594 -11.95444 -11.41898 -11.32701 -10.94724 -10.83011 -9.93624 -9.30587 -8.31023 -6.86213 0.27417 1.16892 1.25307 1.42567 1.44112 1.61580 2.13779 2.21458 2.44770 2.50477 2.86563 3.46798 3.57027 3.62565 3.74450 3.97278 4.05361 4.11950 4.23524 4.39771 4.46035 4.64853 4.67459 4.74882 4.79866 4.87614 4.94678 5.17694 5.31051 5.34793 5.49306 5.95564 6.03205 6.29232 6.55800 6.86605 7.33024 8.40193 8.64753 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.032466 B = 0.004997 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.246052 B = 5602.418480 C = 6177.280601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.593 5.593 4 C 0.601 3.399 5 O -0.482 6.482 6 C -0.173 4.173 7 H 0.096 0.904 8 C 0.167 3.833 9 N -0.656 5.656 10 C 0.558 3.442 11 O -0.626 6.626 12 C -0.559 4.559 13 H 0.095 0.905 14 C 0.030 3.970 15 N -0.821 5.821 16 Si 0.997 3.003 17 H -0.243 1.243 18 H -0.269 1.269 19 H -0.271 1.271 20 C 0.136 3.864 21 C -0.127 4.127 22 H 0.168 0.832 23 C 0.562 3.438 24 O -0.487 6.487 25 H 0.048 0.952 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.275 0.725 33 H 0.067 0.933 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 -17.567 5.113 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.340 5.340 4 C 0.391 3.609 5 O -0.353 6.353 6 C -0.195 4.195 7 H 0.114 0.886 8 C 0.044 3.956 9 N -0.396 5.396 10 C 0.365 3.635 11 O -0.513 6.513 12 C -0.595 4.595 13 H 0.113 0.887 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.816 3.184 17 H -0.166 1.166 18 H -0.194 1.194 19 H -0.196 1.196 20 C 0.012 3.988 21 C -0.149 4.149 22 H 0.185 0.815 23 C 0.351 3.649 24 O -0.357 6.357 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.750 -17.451 4.388 18.010 hybrid contribution -0.269 0.698 0.012 0.748 sum -1.019 -16.753 4.400 17.351 Atomic orbital electron populations 1.22137 0.94384 1.04345 1.01731 1.21974 0.95759 0.78827 1.05796 1.48382 1.62221 1.16399 1.06960 1.18052 0.73274 0.86131 0.83406 1.90771 1.47137 1.77937 1.19486 1.20744 1.04823 0.95350 0.98544 0.88603 1.20084 1.02319 0.85025 0.88137 1.49803 1.79747 1.04738 1.05330 1.18424 0.76107 0.78488 0.90456 1.90590 1.57602 1.70048 1.33066 1.21441 1.53793 0.91624 0.92661 0.88679 1.26983 0.91191 0.99464 1.00936 1.70186 1.36125 1.10521 1.28253 0.84978 0.78420 0.77846 0.77162 1.16576 1.19428 1.19641 1.20925 1.01120 0.86442 0.90297 1.22957 1.03744 0.93322 0.94839 0.81511 1.20395 0.77527 0.83702 0.83260 1.90757 1.51543 1.72151 1.21269 0.93316 0.88220 0.92907 0.87876 0.87292 0.89705 0.89344 0.91487 0.91460 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 71.98 0.74 -1.82 16 2 C 0.10 1.50 6.51 86.38 0.56 2.07 16 3 N -0.59 -12.55 2.73 -758.68 -2.07 -14.62 16 4 C 0.60 14.21 7.68 85.24 0.65 14.87 16 5 O -0.48 -13.23 17.76 -2.88 -0.05 -13.28 16 6 C -0.17 -4.47 3.28 -13.71 -0.05 -4.51 16 7 H 0.10 2.70 7.12 -2.38 -0.02 2.68 16 8 C 0.17 5.26 6.17 83.93 0.52 5.77 16 9 N -0.66 -28.01 3.41 -823.86 -2.81 -30.82 16 10 C 0.56 31.33 7.81 86.36 0.67 32.00 16 11 O -0.63 -41.36 15.38 -4.31 -0.07 -41.43 16 12 C -0.56 -30.18 9.03 24.83 0.22 -29.96 16 13 H 0.10 4.53 6.75 -2.91 -0.02 4.51 16 14 C 0.03 1.59 5.50 85.30 0.47 2.06 16 15 N -0.82 -49.13 11.83 21.84 0.26 -48.87 16 16 Si 1.00 39.40 29.56 68.60 2.03 41.43 16 17 H -0.24 -8.76 7.11 99.48 0.71 -8.05 16 18 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 20 C 0.14 4.87 6.51 85.52 0.56 5.43 16 21 C -0.13 -3.22 3.64 -10.66 -0.04 -3.26 16 22 H 0.17 3.27 8.14 -2.39 -0.02 3.25 16 23 C 0.56 14.00 7.58 86.99 0.66 14.66 16 24 O -0.49 -14.68 17.88 -2.86 -0.05 -14.73 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 1.39 8.11 -2.39 -0.02 1.37 16 29 H 0.11 1.43 7.95 -2.39 -0.02 1.41 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.09 2.81 7.36 -2.39 -0.02 2.80 16 32 H 0.28 14.88 8.29 -92.71 -0.77 14.11 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.05 1.78 8.11 -2.39 -0.02 1.76 16 Total: -1.00 -76.23 296.38 3.34 -72.90 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.12 Total: 12.10 kcal Atomic # 6 Polarization: 32.34 SS G_CDS: 4.97 Total: 37.31 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -4.62 Total: -94.30 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -0.17 Total: -69.44 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -76.23 3.34 -72.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409432197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.462 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds