Wall clock time and date at job start Mon Mar 30 2020 04:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35999 * 123.27197 * 2 1 4 4 O 1.21230 * 126.97872 * 347.41919 * 3 2 1 5 5 C 1.49641 * 106.04667 * 167.37985 * 3 2 1 6 6 H 1.08996 * 109.96177 * 275.02987 * 5 3 2 7 7 C 1.51365 * 119.14982 * 146.84438 * 5 3 2 8 8 C 1.52524 * 107.13707 * 182.51483 * 7 5 3 9 9 N 1.46524 * 111.72702 * 49.23075 * 8 7 5 10 10 C 1.34775 * 119.40001 * 135.15581 * 9 8 7 11 11 O 1.21687 * 119.99949 * 354.71374 * 10 9 8 12 12 C 1.46375 * 119.99948 * 174.71579 * 10 9 8 13 13 H 1.07997 * 120.00004 * 4.97869 * 12 10 9 14 14 C 1.40051 * 119.99645 * 184.97968 * 12 10 9 15 15 N 1.30665 * 120.00602 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99673 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47076 * 89.99905 * 16 14 12 18 18 H 1.48500 * 109.46944 * 209.99879 * 16 14 12 19 19 H 1.48497 * 109.47200 * 330.00305 * 16 14 12 20 20 C 1.48058 * 121.20151 * 315.18130 * 9 8 7 21 21 C 1.51401 * 105.64713 * 50.32033 * 20 9 8 22 22 H 1.09008 * 109.99770 * 58.28395 * 21 20 9 23 23 C 1.35989 * 123.27752 * 179.70574 * 2 1 3 24 24 O 1.21233 * 126.97050 * 347.31193 * 23 2 1 25 25 H 1.08994 * 109.47127 * 90.00538 * 1 2 3 26 26 H 1.09002 * 109.47207 * 329.99749 * 1 2 3 27 27 H 1.09005 * 109.46830 * 210.00162 * 1 2 3 28 28 H 1.08995 * 110.10520 * 300.42956 * 7 5 3 29 29 H 1.09003 * 110.10263 * 62.09763 * 7 5 3 30 30 H 1.09002 * 108.10835 * 289.09203 * 8 7 5 31 31 H 1.09008 * 109.49017 * 170.28132 * 8 7 5 32 32 H 0.96995 * 120.00861 * 179.97438 * 15 14 12 33 33 H 1.09010 * 110.20450 * 291.29082 * 20 9 8 34 34 H 1.09004 * 110.32073 * 169.41950 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2111 1.1371 0.0000 4 8 1.8209 2.2653 -0.2109 5 6 3.6113 0.7130 0.3142 6 1 3.7460 0.6444 1.3936 7 6 4.7672 1.4704 -0.3033 8 6 6.0496 0.7767 0.1446 9 7 5.9842 -0.6720 -0.0647 10 6 7.0396 -1.3104 -0.6077 11 8 7.9961 -0.6733 -1.0077 12 6 7.0354 -2.7701 -0.7163 13 1 6.1553 -3.3299 -0.4361 14 6 8.1726 -3.4408 -1.1835 15 7 9.2373 -2.7636 -1.5229 16 14 8.1674 -5.3038 -1.3214 17 1 7.6853 -5.6990 -2.6693 18 1 9.5452 -5.8190 -1.1177 19 1 7.2676 -5.8742 -0.2870 20 6 4.7794 -1.4473 0.3090 21 6 3.6116 -0.7131 -0.3149 22 1 3.7472 -0.6460 -1.3944 23 6 2.2111 -1.1369 0.0058 24 8 1.8212 -2.2638 0.2244 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 4.7080 1.4230 -1.3907 29 1 4.7550 2.5085 0.0288 30 1 6.1911 0.9789 1.2063 31 1 6.8952 1.1808 -0.4122 32 1 10.0250 -3.2281 -1.8462 33 1 4.6709 -1.4749 1.3934 34 1 4.8429 -2.4604 -0.0882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409433602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:02 Heat of formation + Delta-G solvation = -81.356803 kcal Electronic energy + Delta-G solvation = -20681.246043 eV Core-core repulsion = 17387.066941 eV Total energy + Delta-G solvation = -3294.179102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.09206 -38.59312 -38.40114 -36.18662 -35.45056 -32.72339 -32.16234 -31.35173 -27.81980 -26.75594 -25.40964 -23.68619 -22.55668 -21.03574 -19.54360 -18.92132 -17.41487 -17.00663 -16.62965 -16.00571 -15.75931 -14.98944 -14.88463 -14.73196 -14.08956 -14.06031 -13.75401 -13.37150 -13.17310 -12.88785 -12.76823 -12.38509 -11.75139 -11.67829 -11.31994 -11.23959 -11.06506 -11.01252 -10.69858 -10.44568 -10.27082 -10.01513 -9.80718 -9.71552 -8.91855 -7.69224 -7.45610 -6.27312 -4.73266 1.46811 2.39505 2.47334 3.11284 3.19120 3.22031 3.77318 4.01165 4.21595 4.28803 4.48497 4.51825 4.83737 4.97882 5.11688 5.16851 5.31538 5.37691 5.46959 5.48024 5.59930 5.71218 5.84998 5.97722 6.13902 6.27954 6.44758 6.49517 6.58684 7.19726 7.38859 7.43941 7.70692 8.01604 8.21277 8.95062 9.25205 10.47140 10.66049 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.005918 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.812830 B = 4730.410601 C = 5629.675726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.599 5.599 3 C 0.545 3.455 4 O -0.476 6.476 5 C -0.131 4.131 6 H 0.122 0.878 7 C -0.108 4.108 8 C 0.120 3.880 9 N -0.644 5.644 10 C 0.556 3.444 11 O -0.573 6.573 12 C -0.545 4.545 13 H 0.075 0.925 14 C 0.089 3.911 15 N -0.766 5.766 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.263 1.263 20 C 0.150 3.850 21 C -0.147 4.147 22 H 0.128 0.872 23 C 0.549 3.451 24 O -0.467 6.467 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.269 0.731 33 H 0.057 0.943 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 4.060 3.839 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.335 3.665 4 O -0.346 6.346 5 C -0.152 4.152 6 H 0.140 0.860 7 C -0.147 4.147 8 C -0.004 4.004 9 N -0.383 5.383 10 C 0.363 3.637 11 O -0.456 6.456 12 C -0.582 4.582 13 H 0.093 0.907 14 C -0.132 4.132 15 N -0.394 5.394 16 Si 0.730 3.270 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.187 1.187 20 C 0.025 3.975 21 C -0.169 4.169 22 H 0.145 0.855 23 C 0.338 3.662 24 O -0.337 6.337 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.197 4.416 3.556 14.363 hybrid contribution -0.386 -0.884 -0.056 0.966 sum -13.583 3.531 3.500 14.464 Atomic orbital electron populations 1.21854 0.77796 1.04199 1.03253 1.47865 1.08998 1.09132 1.68601 1.20802 0.88798 0.83279 0.73582 1.90730 1.79041 1.20159 1.44680 1.22167 0.92691 0.96758 1.03596 0.86011 1.21384 0.92855 0.99180 1.01302 1.20867 0.96733 0.83154 0.99682 1.48424 1.16471 1.05023 1.68388 1.18305 0.80062 0.88673 0.76677 1.90602 1.34626 1.68008 1.52345 1.21020 1.00549 0.89948 1.46644 0.90670 1.25721 0.94785 0.99804 0.92851 1.69996 1.02331 1.36579 1.30533 0.86395 0.78185 0.83035 0.79382 1.19665 1.20426 1.18709 1.21032 0.81655 0.96914 0.97917 1.22730 0.93196 0.96490 1.04496 0.85474 1.20736 0.88555 0.83274 0.73675 1.90754 1.78892 1.20023 1.43996 0.91326 0.90096 0.89594 0.90893 0.89788 0.94026 0.88822 0.91970 0.92475 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.76 59.85 0.64 1.30 16 2 N -0.60 -7.22 3.07 -122.83 -0.38 -7.60 16 3 C 0.55 7.06 7.71 -10.94 -0.08 6.97 16 4 O -0.48 -7.18 17.82 5.60 0.10 -7.08 16 5 C -0.13 -1.65 2.36 -91.57 -0.22 -1.87 16 6 H 0.12 1.38 7.92 -51.93 -0.41 0.97 16 7 C -0.11 -1.47 5.87 -27.80 -0.16 -1.63 16 8 C 0.12 2.07 6.24 -4.27 -0.03 2.04 16 9 N -0.64 -13.22 3.02 -175.29 -0.53 -13.75 16 10 C 0.56 14.82 7.58 -12.99 -0.10 14.72 16 11 O -0.57 -17.58 14.35 5.20 0.07 -17.50 16 12 C -0.55 -14.48 8.81 -35.63 -0.31 -14.80 16 13 H 0.08 1.81 5.66 -52.49 -0.30 1.52 16 14 C 0.09 2.37 5.50 -17.37 -0.10 2.28 16 15 N -0.77 -22.12 11.84 55.55 0.66 -21.46 16 16 Si 0.91 19.46 29.56 -169.99 -5.02 14.43 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 C 0.15 2.52 6.03 -3.99 -0.02 2.49 16 21 C -0.15 -2.07 2.58 -91.49 -0.24 -2.30 16 22 H 0.13 1.85 7.91 -51.92 -0.41 1.44 16 23 C 0.55 7.50 7.75 -10.88 -0.08 7.41 16 24 O -0.47 -7.49 17.67 5.60 0.10 -7.39 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 27 H 0.09 0.74 7.88 -51.93 -0.41 0.33 16 28 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.86 6.91 -51.92 -0.36 1.50 16 32 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 33 H 0.06 0.87 8.04 -51.92 -0.42 0.45 16 34 H 0.11 2.01 5.40 -51.93 -0.28 1.73 16 LS Contribution 288.31 15.07 4.34 4.34 Total: -1.00 -33.59 288.31 -5.17 -38.77 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.82 Total: 0.61 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: -0.70 Total: 16.62 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.25 Total: -42.81 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: 0.27 Total: -31.97 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.59 -5.17 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.588 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds