Wall clock time and date at job start Mon Mar 30 2020 04:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35999 * 123.27197 * 2 1 4 4 O 1.21230 * 126.97872 * 347.41919 * 3 2 1 5 5 C 1.49641 * 106.04667 * 167.37985 * 3 2 1 6 6 H 1.08996 * 109.96177 * 275.02987 * 5 3 2 7 7 C 1.51365 * 119.14982 * 146.84438 * 5 3 2 8 8 C 1.52524 * 107.13707 * 182.51483 * 7 5 3 9 9 N 1.46524 * 111.72702 * 49.23075 * 8 7 5 10 10 C 1.34775 * 119.40001 * 135.15581 * 9 8 7 11 11 O 1.21687 * 119.99949 * 354.71374 * 10 9 8 12 12 C 1.46375 * 119.99948 * 174.71579 * 10 9 8 13 13 H 1.07997 * 120.00004 * 4.97869 * 12 10 9 14 14 C 1.40051 * 119.99645 * 184.97968 * 12 10 9 15 15 N 1.30665 * 120.00602 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99673 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47076 * 89.99905 * 16 14 12 18 18 H 1.48500 * 109.46944 * 209.99879 * 16 14 12 19 19 H 1.48497 * 109.47200 * 330.00305 * 16 14 12 20 20 C 1.48058 * 121.20151 * 315.18130 * 9 8 7 21 21 C 1.51401 * 105.64713 * 50.32033 * 20 9 8 22 22 H 1.09008 * 109.99770 * 58.28395 * 21 20 9 23 23 C 1.35989 * 123.27752 * 179.70574 * 2 1 3 24 24 O 1.21233 * 126.97050 * 347.31193 * 23 2 1 25 25 H 1.08994 * 109.47127 * 90.00538 * 1 2 3 26 26 H 1.09002 * 109.47207 * 329.99749 * 1 2 3 27 27 H 1.09005 * 109.46830 * 210.00162 * 1 2 3 28 28 H 1.08995 * 110.10520 * 300.42956 * 7 5 3 29 29 H 1.09003 * 110.10263 * 62.09763 * 7 5 3 30 30 H 1.09002 * 108.10835 * 289.09203 * 8 7 5 31 31 H 1.09008 * 109.49017 * 170.28132 * 8 7 5 32 32 H 0.96995 * 120.00861 * 179.97438 * 15 14 12 33 33 H 1.09010 * 110.20450 * 291.29082 * 20 9 8 34 34 H 1.09004 * 110.32073 * 169.41950 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2111 1.1371 0.0000 4 8 1.8209 2.2653 -0.2109 5 6 3.6113 0.7130 0.3142 6 1 3.7460 0.6444 1.3936 7 6 4.7672 1.4704 -0.3033 8 6 6.0496 0.7767 0.1446 9 7 5.9842 -0.6720 -0.0647 10 6 7.0396 -1.3104 -0.6077 11 8 7.9961 -0.6733 -1.0077 12 6 7.0354 -2.7701 -0.7163 13 1 6.1553 -3.3299 -0.4361 14 6 8.1726 -3.4408 -1.1835 15 7 9.2373 -2.7636 -1.5229 16 14 8.1674 -5.3038 -1.3214 17 1 7.6853 -5.6990 -2.6693 18 1 9.5452 -5.8190 -1.1177 19 1 7.2676 -5.8742 -0.2870 20 6 4.7794 -1.4473 0.3090 21 6 3.6116 -0.7131 -0.3149 22 1 3.7472 -0.6460 -1.3944 23 6 2.2111 -1.1369 0.0058 24 8 1.8212 -2.2638 0.2244 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 4.7080 1.4230 -1.3907 29 1 4.7550 2.5085 0.0288 30 1 6.1911 0.9789 1.2063 31 1 6.8952 1.1808 -0.4122 32 1 10.0250 -3.2281 -1.8462 33 1 4.6709 -1.4749 1.3934 34 1 4.8429 -2.4604 -0.0882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409433602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:02 Heat of formation + Delta-G solvation = -105.681377 kcal Electronic energy + Delta-G solvation = -20682.300836 eV Core-core repulsion = 17387.066941 eV Total energy + Delta-G solvation = -3295.233895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.20654 -40.01189 -39.72711 -37.73090 -36.71351 -34.67958 -33.70315 -32.64326 -28.95486 -28.52943 -26.75342 -24.96735 -23.86603 -22.37616 -20.98696 -20.23603 -18.73127 -18.22537 -18.08642 -17.58861 -17.10279 -16.40738 -16.13623 -16.05456 -15.70226 -15.42567 -15.12263 -14.68216 -14.41126 -14.11918 -13.87851 -13.54148 -13.41646 -13.13524 -12.95190 -12.73020 -12.66600 -12.52434 -12.09219 -11.99687 -11.92069 -11.16435 -11.12672 -10.90861 -10.74272 -9.76685 -9.18208 -8.27341 -6.81606 0.37427 1.37368 1.41770 1.43181 1.43501 1.58342 2.24806 2.44027 2.60094 2.84312 3.16724 3.28086 3.61927 3.80084 3.95420 4.12952 4.23133 4.23548 4.40010 4.45934 4.48524 4.66573 4.73963 4.75055 4.83458 4.92164 4.99347 5.20189 5.41493 5.56285 5.73716 6.10856 6.16409 6.37737 6.65634 6.91237 7.35148 8.47533 8.68521 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.005918 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.812830 B = 4730.410601 C = 5629.675726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.593 5.593 3 C 0.556 3.444 4 O -0.493 6.493 5 C -0.122 4.122 6 H 0.145 0.855 7 C -0.095 4.095 8 C 0.118 3.882 9 N -0.644 5.644 10 C 0.542 3.458 11 O -0.627 6.627 12 C -0.569 4.569 13 H 0.095 0.905 14 C 0.033 3.967 15 N -0.820 5.820 16 Si 0.988 3.012 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.248 1.248 20 C 0.149 3.851 21 C -0.143 4.143 22 H 0.121 0.879 23 C 0.561 3.439 24 O -0.489 6.489 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.274 0.726 33 H 0.080 0.920 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.742 3.534 4.795 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.347 3.653 4 O -0.364 6.364 5 C -0.143 4.143 6 H 0.162 0.838 7 C -0.133 4.133 8 C -0.005 4.005 9 N -0.381 5.381 10 C 0.348 3.652 11 O -0.514 6.514 12 C -0.605 4.605 13 H 0.113 0.887 14 C -0.183 4.183 15 N -0.450 5.450 16 Si 0.808 3.192 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.171 1.171 20 C 0.026 3.974 21 C -0.165 4.165 22 H 0.139 0.861 23 C 0.351 3.649 24 O -0.360 6.360 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.533 3.914 4.540 16.649 hybrid contribution 0.253 -0.638 -0.325 0.759 sum -15.280 3.275 4.215 16.186 Atomic orbital electron populations 1.22111 0.75766 1.05332 1.04402 1.47786 1.10221 1.08148 1.67718 1.20616 0.88630 0.83057 0.73008 1.90742 1.79272 1.20837 1.45580 1.22141 0.92384 0.95077 1.04703 0.83767 1.21231 0.91122 1.00197 1.00789 1.20981 0.97698 0.81312 1.00509 1.48198 1.16265 1.06556 1.67052 1.18605 0.80720 0.89264 0.76617 1.90557 1.37112 1.69095 1.54619 1.21555 1.01561 0.90628 1.46780 0.88697 1.26889 0.94016 1.05606 0.91747 1.70164 1.03439 1.39271 1.32134 0.85155 0.78540 0.75670 0.79873 1.18892 1.19975 1.17085 1.21079 0.81076 0.95909 0.99345 1.22521 0.92804 0.97124 1.04061 0.86106 1.20414 0.88188 0.83190 0.73141 1.90757 1.79129 1.20939 1.45204 0.90231 0.88755 0.88739 0.91830 0.87171 0.91964 0.92115 0.91654 0.90140 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 10.76 127.77 1.38 2.36 16 2 N -0.59 -12.56 3.07 -777.93 -2.39 -14.95 16 3 C 0.56 12.72 7.71 87.13 0.67 13.39 16 4 O -0.49 -13.41 17.82 -2.87 -0.05 -13.46 16 5 C -0.12 -2.74 2.36 -11.41 -0.03 -2.77 16 6 H 0.14 2.69 7.92 -2.39 -0.02 2.67 16 7 C -0.09 -2.40 5.87 29.90 0.18 -2.22 16 8 C 0.12 4.04 6.24 86.22 0.54 4.58 16 9 N -0.64 -26.46 3.02 -826.72 -2.50 -28.96 16 10 C 0.54 29.73 7.58 86.36 0.65 30.38 16 11 O -0.63 -40.27 14.35 -4.31 -0.06 -40.33 16 12 C -0.57 -30.66 8.81 24.83 0.22 -30.44 16 13 H 0.10 4.56 5.66 -2.91 -0.02 4.54 16 14 C 0.03 1.78 5.50 85.31 0.47 2.25 16 15 N -0.82 -48.98 11.84 21.84 0.26 -48.72 16 16 Si 0.99 39.97 29.56 68.60 2.03 42.00 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 20 C 0.15 4.84 6.03 85.56 0.52 5.36 16 21 C -0.14 -3.76 2.58 -11.36 -0.03 -3.79 16 22 H 0.12 3.39 7.91 -2.38 -0.02 3.38 16 23 C 0.56 14.00 7.75 87.18 0.68 14.68 16 24 O -0.49 -14.64 17.67 -2.88 -0.05 -14.69 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.09 1.24 8.07 -2.39 -0.02 1.22 16 27 H 0.09 1.33 7.88 -2.38 -0.02 1.31 16 28 H 0.06 1.75 7.95 -2.39 -0.02 1.73 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.27 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.50 6.91 -2.38 -0.02 2.49 16 32 H 0.27 14.87 8.29 -92.71 -0.77 14.10 16 33 H 0.08 2.26 8.04 -2.38 -0.02 2.24 16 34 H 0.09 3.33 5.40 -2.39 -0.01 3.32 16 Total: -1.00 -75.07 288.31 3.61 -71.46 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.13 Total: 13.88 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 5.24 Total: 33.77 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -4.63 Total: -92.63 kcal Atomic # 8 Polarization: -68.31 SS G_CDS: -0.16 Total: -68.47 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -75.07 3.61 -71.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.220 kcal (2) G-P(sol) polarization free energy of solvation -75.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds