Wall clock time and date at job start Mon Mar 30 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34047 * 122.85051 * 2 1 4 4 O 1.21226 * 125.60076 * 356.21566 * 3 2 1 5 5 C 1.52642 * 108.80152 * 176.23522 * 3 2 1 6 6 H 1.09005 * 109.90365 * 126.27648 * 5 3 2 7 7 C 1.51109 * 107.73630 * 245.97591 * 5 3 2 8 8 C 1.51113 * 115.00898 * 149.93203 * 7 5 3 9 9 N 1.45548 * 111.23481 * 313.97643 * 8 7 5 10 10 C 1.34771 * 119.42733 * 228.29462 * 9 8 7 11 11 O 1.21688 * 120.00052 * 355.49483 * 10 9 8 12 12 C 1.46375 * 120.00245 * 175.48586 * 10 9 8 13 13 H 1.08001 * 119.99882 * 5.50109 * 12 10 9 14 14 C 1.40046 * 120.00177 * 185.50082 * 12 10 9 15 15 N 1.30669 * 120.00016 * 5.14977 * 14 12 10 16 16 Si 1.86802 * 119.99869 * 185.14550 * 14 12 10 17 17 H 1.48502 * 109.47109 * 264.99900 * 16 14 12 18 18 H 1.48502 * 109.47104 * 25.00235 * 16 14 12 19 19 H 1.48503 * 109.46998 * 145.00174 * 16 14 12 20 20 C 1.45196 * 121.14565 * 48.57464 * 9 8 7 21 21 C 1.48934 * 114.30904 * 323.57960 * 20 9 8 22 22 H 1.09001 * 105.73580 * 141.07478 * 21 20 9 23 23 C 1.34411 * 122.84353 * 180.02562 * 2 1 3 24 24 O 1.21221 * 126.01781 * 356.62035 * 23 2 1 25 25 H 1.09008 * 109.47095 * 89.99940 * 1 2 3 26 26 H 1.08999 * 109.47773 * 209.99924 * 1 2 3 27 27 H 1.08994 * 109.47171 * 330.00198 * 1 2 3 28 28 H 1.09004 * 108.37662 * 28.49926 * 7 5 3 29 29 H 1.09000 * 108.24298 * 271.26337 * 7 5 3 30 30 H 1.08996 * 109.12553 * 193.52614 * 8 7 5 31 31 H 1.09001 * 109.07458 * 74.39283 * 8 7 5 32 32 H 0.96998 * 120.00052 * 179.97438 * 15 14 12 33 33 H 1.09006 * 108.49016 * 84.53796 * 20 9 8 34 34 H 1.08995 * 108.49220 * 201.97551 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1921 1.1261 0.0000 4 8 1.7486 2.2525 -0.0651 5 6 3.6702 0.7573 0.0949 6 1 4.2227 1.2262 -0.7194 7 6 4.1860 1.2611 1.4228 8 6 5.3118 0.4492 2.0205 9 7 5.0263 -0.9765 1.9544 10 6 5.1930 -1.7368 3.0546 11 8 5.6565 -1.2476 4.0678 12 6 4.8163 -3.1511 3.0309 13 1 4.4887 -3.6072 2.1083 14 6 4.8807 -3.9127 4.2043 15 7 5.1797 -3.3393 5.3398 16 14 4.5392 -5.7483 4.1463 17 1 3.1148 -5.9977 4.4842 18 1 4.8215 -6.2615 2.7817 19 1 5.4099 -6.4450 5.1271 20 6 4.5709 -1.5948 0.7222 21 6 3.6574 -0.7438 -0.0897 22 1 3.9400 -0.9141 -1.1286 23 6 2.1939 -1.1293 -0.0005 24 8 1.7582 -2.2590 0.0568 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 3.3576 1.2732 2.1311 29 1 4.5351 2.2847 1.2872 30 1 5.4465 0.7385 3.0627 31 1 6.2303 0.6554 1.4710 32 1 5.2240 -3.8668 6.1526 33 1 5.4427 -1.8378 0.1145 34 1 4.0576 -2.5237 0.9707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409433603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:06 Heat of formation + Delta-G solvation = -88.062515 kcal Electronic energy + Delta-G solvation = -20968.922368 eV Core-core repulsion = 17674.452484 eV Total energy + Delta-G solvation = -3294.469884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12206 -38.62168 -38.34233 -36.08339 -35.40969 -32.81354 -32.39874 -31.66879 -27.89041 -26.89084 -25.39890 -23.99306 -22.85646 -20.72989 -19.57368 -18.72156 -17.40856 -16.79761 -16.69149 -16.16922 -15.67585 -15.01435 -14.80805 -14.67609 -14.29853 -14.06031 -13.74426 -13.36198 -12.98388 -12.76828 -12.64445 -12.47154 -12.03783 -11.57839 -11.44373 -11.27938 -10.98854 -10.88609 -10.51232 -10.28066 -10.22896 -9.97147 -9.84561 -9.77594 -8.87709 -7.68573 -7.35712 -6.26501 -4.69540 1.54101 2.45887 2.74411 3.13445 3.21192 3.25124 3.93581 4.06618 4.13703 4.31244 4.50022 4.57900 4.67121 5.06540 5.19567 5.21015 5.37638 5.41409 5.47474 5.54760 5.59183 5.72259 5.84967 5.98786 6.12725 6.37451 6.46655 6.53935 6.75980 7.30342 7.41952 7.57038 7.79843 8.07389 8.26237 8.98148 9.29959 10.49446 10.68108 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.006858 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.946061 B = 4081.590953 C = 4796.593963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.580 5.580 3 C 0.531 3.469 4 O -0.487 6.487 5 C -0.098 4.098 6 H 0.119 0.881 7 C -0.116 4.116 8 C 0.125 3.875 9 N -0.637 5.637 10 C 0.556 3.444 11 O -0.575 6.575 12 C -0.544 4.544 13 H 0.076 0.924 14 C 0.089 3.911 15 N -0.767 5.767 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.262 1.262 19 H -0.278 1.278 20 C 0.140 3.860 21 C -0.127 4.127 22 H 0.112 0.888 23 C 0.535 3.465 24 O -0.465 6.465 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.269 0.731 33 H 0.055 0.945 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 5.473 -12.195 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C 0.320 3.680 4 O -0.359 6.359 5 C -0.119 4.119 6 H 0.137 0.863 7 C -0.155 4.155 8 C 0.000 4.000 9 N -0.376 5.376 10 C 0.363 3.637 11 O -0.457 6.457 12 C -0.580 4.580 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.395 5.395 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.186 1.186 19 H -0.203 1.203 20 C 0.015 3.985 21 C -0.150 4.150 22 H 0.130 0.870 23 C 0.323 3.677 24 O -0.335 6.335 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.136 5.709 -11.443 13.781 hybrid contribution -0.498 -0.824 -0.245 0.994 sum -5.634 4.885 -11.688 13.864 Atomic orbital electron populations 1.21902 0.77459 1.04708 1.03244 1.46785 1.09419 1.09578 1.66631 1.21339 0.90078 0.83614 0.72956 1.90730 1.77974 1.21037 1.46114 1.21183 0.92961 0.95167 1.02623 0.86260 1.20959 1.00574 1.00394 0.93558 1.20371 0.94390 0.82930 1.02271 1.47388 1.72262 1.06504 1.11413 1.18284 0.78204 0.86950 0.80249 1.90593 1.49243 1.74368 1.31498 1.21012 1.47313 0.93436 0.96244 0.90644 1.25716 0.92663 0.99889 0.94818 1.69993 1.34136 1.36538 0.98862 0.86384 0.78751 0.82831 0.79064 1.19787 1.18601 1.20344 1.19921 0.95767 0.96239 0.86583 1.21012 0.93471 0.95640 1.04840 0.87041 1.21063 0.89665 0.83698 0.73232 1.90770 1.77886 1.20337 1.44495 0.91198 0.89382 0.89752 0.91924 0.90052 0.88852 0.93830 0.91986 0.92667 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 10.61 59.84 0.64 1.40 16 2 N -0.58 -8.00 2.97 -121.88 -0.36 -8.36 16 3 C 0.53 7.37 6.99 -10.34 -0.07 7.30 16 4 O -0.49 -7.67 17.54 5.60 0.10 -7.57 16 5 C -0.10 -1.22 3.30 -92.64 -0.31 -1.53 16 6 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.12 -1.66 5.44 -28.63 -0.16 -1.82 16 8 C 0.12 2.23 6.33 -5.50 -0.03 2.19 16 9 N -0.64 -13.60 3.07 -180.69 -0.55 -14.15 16 10 C 0.56 15.29 7.56 -12.99 -0.10 15.19 16 11 O -0.57 -17.98 14.38 5.20 0.07 -17.91 16 12 C -0.54 -14.95 8.72 -35.63 -0.31 -15.26 16 13 H 0.08 1.91 5.78 -52.49 -0.30 1.61 16 14 C 0.09 2.46 5.49 -17.37 -0.10 2.36 16 15 N -0.77 -22.60 11.88 55.55 0.66 -21.95 16 16 Si 0.91 20.06 29.56 -169.99 -5.03 15.03 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 C 0.14 2.43 5.81 -6.74 -0.04 2.40 16 21 C -0.13 -1.74 2.70 -94.21 -0.25 -1.99 16 22 H 0.11 1.12 8.03 -51.93 -0.42 0.70 16 23 C 0.53 8.20 7.67 -10.70 -0.08 8.12 16 24 O -0.47 -8.44 17.00 5.61 0.10 -8.34 16 25 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.09 0.99 7.84 -51.93 -0.41 0.58 16 27 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 28 H 0.06 1.01 7.65 -51.93 -0.40 0.62 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.92 6.92 -51.93 -0.36 1.56 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 2.12 4.68 -51.93 -0.24 1.88 16 LS Contribution 286.11 15.07 4.31 4.31 Total: -1.00 -35.20 286.11 -5.30 -40.50 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.78 Total: 0.07 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: -0.81 Total: 18.37 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.26 Total: -44.46 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: 0.27 Total: -33.82 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.20 -5.30 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.566 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds