Wall clock time and date at job start Mon Mar 30 2020 04:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34047 * 122.85051 * 2 1 4 4 O 1.21226 * 125.60076 * 356.21566 * 3 2 1 5 5 C 1.52642 * 108.80152 * 176.23522 * 3 2 1 6 6 H 1.09005 * 109.90365 * 126.27648 * 5 3 2 7 7 C 1.51109 * 107.73630 * 245.97591 * 5 3 2 8 8 C 1.51113 * 115.00898 * 149.93203 * 7 5 3 9 9 N 1.45548 * 111.23481 * 313.97643 * 8 7 5 10 10 C 1.34771 * 119.42733 * 228.29462 * 9 8 7 11 11 O 1.21688 * 120.00052 * 355.49483 * 10 9 8 12 12 C 1.46375 * 120.00245 * 175.48586 * 10 9 8 13 13 H 1.08001 * 119.99882 * 5.50109 * 12 10 9 14 14 C 1.40046 * 120.00177 * 185.50082 * 12 10 9 15 15 N 1.30669 * 120.00016 * 5.14977 * 14 12 10 16 16 Si 1.86802 * 119.99869 * 185.14550 * 14 12 10 17 17 H 1.48502 * 109.47109 * 264.99900 * 16 14 12 18 18 H 1.48502 * 109.47104 * 25.00235 * 16 14 12 19 19 H 1.48503 * 109.46998 * 145.00174 * 16 14 12 20 20 C 1.45196 * 121.14565 * 48.57464 * 9 8 7 21 21 C 1.48934 * 114.30904 * 323.57960 * 20 9 8 22 22 H 1.09001 * 105.73580 * 141.07478 * 21 20 9 23 23 C 1.34411 * 122.84353 * 180.02562 * 2 1 3 24 24 O 1.21221 * 126.01781 * 356.62035 * 23 2 1 25 25 H 1.09008 * 109.47095 * 89.99940 * 1 2 3 26 26 H 1.08999 * 109.47773 * 209.99924 * 1 2 3 27 27 H 1.08994 * 109.47171 * 330.00198 * 1 2 3 28 28 H 1.09004 * 108.37662 * 28.49926 * 7 5 3 29 29 H 1.09000 * 108.24298 * 271.26337 * 7 5 3 30 30 H 1.08996 * 109.12553 * 193.52614 * 8 7 5 31 31 H 1.09001 * 109.07458 * 74.39283 * 8 7 5 32 32 H 0.96998 * 120.00052 * 179.97438 * 15 14 12 33 33 H 1.09006 * 108.49016 * 84.53796 * 20 9 8 34 34 H 1.08995 * 108.49220 * 201.97551 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1921 1.1261 0.0000 4 8 1.7486 2.2525 -0.0651 5 6 3.6702 0.7573 0.0949 6 1 4.2227 1.2262 -0.7194 7 6 4.1860 1.2611 1.4228 8 6 5.3118 0.4492 2.0205 9 7 5.0263 -0.9765 1.9544 10 6 5.1930 -1.7368 3.0546 11 8 5.6565 -1.2476 4.0678 12 6 4.8163 -3.1511 3.0309 13 1 4.4887 -3.6072 2.1083 14 6 4.8807 -3.9127 4.2043 15 7 5.1797 -3.3393 5.3398 16 14 4.5392 -5.7483 4.1463 17 1 3.1148 -5.9977 4.4842 18 1 4.8215 -6.2615 2.7817 19 1 5.4099 -6.4450 5.1271 20 6 4.5709 -1.5948 0.7222 21 6 3.6574 -0.7438 -0.0897 22 1 3.9400 -0.9141 -1.1286 23 6 2.1939 -1.1293 -0.0005 24 8 1.7582 -2.2590 0.0568 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 3.3576 1.2732 2.1311 29 1 4.5351 2.2847 1.2872 30 1 5.4465 0.7385 3.0627 31 1 6.2303 0.6554 1.4710 32 1 5.2240 -3.8668 6.1526 33 1 5.4427 -1.8378 0.1145 34 1 4.0576 -2.5237 0.9707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409433603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:05 Heat of formation + Delta-G solvation = -114.524714 kcal Electronic energy + Delta-G solvation = -20970.069855 eV Core-core repulsion = 17674.452484 eV Total energy + Delta-G solvation = -3295.617371 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.25950 -40.07985 -39.76474 -37.63804 -36.73480 -34.73997 -34.02939 -33.00342 -29.11902 -28.63692 -26.85991 -25.27951 -24.17978 -22.29730 -20.80327 -20.18251 -18.82143 -18.17326 -17.99313 -17.62180 -17.37301 -16.30816 -16.28947 -16.10023 -15.81253 -15.43538 -14.96930 -14.75441 -14.38327 -14.16104 -13.87780 -13.57170 -13.44388 -13.36910 -13.04504 -12.97177 -12.73191 -12.32238 -12.06391 -11.90748 -11.66061 -11.35523 -11.03031 -10.92900 -10.87306 -9.81369 -9.10165 -8.32281 -6.83788 0.39465 1.38164 1.38781 1.39494 1.55383 1.66242 2.22938 2.43272 2.73064 2.93856 3.04600 3.41637 3.59525 3.60827 4.06901 4.16795 4.20689 4.32629 4.35784 4.40054 4.50624 4.61351 4.67072 4.79182 4.85880 4.94298 5.00156 5.22225 5.38510 5.66860 5.77735 6.16027 6.18331 6.42222 6.67543 6.88281 7.36375 8.44684 8.65019 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.006858 C = 0.005836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.946061 B = 4081.590953 C = 4796.593963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.583 5.583 3 C 0.535 3.465 4 O -0.504 6.504 5 C -0.088 4.088 6 H 0.169 0.831 7 C -0.107 4.107 8 C 0.123 3.877 9 N -0.639 5.639 10 C 0.541 3.459 11 O -0.628 6.628 12 C -0.569 4.569 13 H 0.092 0.908 14 C 0.032 3.968 15 N -0.821 5.821 16 Si 0.986 3.014 17 H -0.267 1.267 18 H -0.246 1.246 19 H -0.270 1.270 20 C 0.138 3.862 21 C -0.128 4.128 22 H 0.163 0.837 23 C 0.531 3.469 24 O -0.501 6.501 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.274 0.726 33 H 0.085 0.915 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 5.480 -15.006 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.326 5.326 3 C 0.325 3.675 4 O -0.377 6.377 5 C -0.109 4.109 6 H 0.187 0.813 7 C -0.146 4.146 8 C 0.000 4.000 9 N -0.375 5.375 10 C 0.347 3.653 11 O -0.515 6.515 12 C -0.605 4.605 13 H 0.109 0.891 14 C -0.183 4.183 15 N -0.450 5.450 16 Si 0.806 3.194 17 H -0.192 1.192 18 H -0.169 1.169 19 H -0.195 1.195 20 C 0.014 3.986 21 C -0.149 4.149 22 H 0.180 0.820 23 C 0.321 3.679 24 O -0.373 6.373 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.053 0.947 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.269 5.756 -14.320 16.308 hybrid contribution -0.486 -0.735 0.600 1.066 sum -5.755 5.020 -13.720 15.703 Atomic orbital electron populations 1.22091 0.76307 1.04695 1.04835 1.46879 1.10434 1.09268 1.65976 1.21483 0.90555 0.83174 0.72264 1.90734 1.78383 1.21621 1.46972 1.21275 0.92425 0.94340 1.02902 0.81338 1.20856 0.98264 1.01579 0.93874 1.20499 0.97279 0.81270 1.00987 1.47183 1.71324 1.07693 1.11317 1.18573 0.77853 0.87808 0.81070 1.90544 1.51455 1.75477 1.34018 1.21521 1.47497 0.94228 0.97235 0.89054 1.26895 0.91756 1.05552 0.94091 1.70151 1.35902 1.39024 0.99955 0.85169 0.78699 0.75662 0.79879 1.19210 1.16929 1.19508 1.20041 0.97382 0.95732 0.85458 1.20996 0.91452 0.95726 1.06752 0.81974 1.21385 0.90651 0.83435 0.72384 1.90754 1.78617 1.21709 1.46248 0.88871 0.89914 0.89269 0.94654 0.86645 0.92649 0.90847 0.91577 0.89728 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 10.61 127.77 1.36 2.63 16 2 N -0.58 -14.85 2.97 -776.95 -2.31 -17.16 16 3 C 0.54 13.26 6.99 88.40 0.62 13.88 16 4 O -0.50 -14.48 17.54 -2.86 -0.05 -14.53 16 5 C -0.09 -1.85 3.30 -12.10 -0.04 -1.89 16 6 H 0.17 2.01 8.14 -2.38 -0.02 1.99 16 7 C -0.11 -2.81 5.44 29.36 0.16 -2.65 16 8 C 0.12 4.29 6.33 85.94 0.54 4.84 16 9 N -0.64 -27.11 3.07 -843.81 -2.59 -29.70 16 10 C 0.54 30.66 7.56 86.36 0.65 31.31 16 11 O -0.63 -41.29 14.38 -4.31 -0.06 -41.35 16 12 C -0.57 -31.91 8.72 24.83 0.22 -31.69 16 13 H 0.09 4.67 5.78 -2.91 -0.02 4.65 16 14 C 0.03 1.82 5.49 85.30 0.47 2.28 16 15 N -0.82 -50.22 11.88 21.83 0.26 -49.96 16 16 Si 0.99 41.52 29.56 68.60 2.03 43.55 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 C 0.14 4.51 5.81 85.33 0.50 5.01 16 21 C -0.13 -3.03 2.70 -13.12 -0.04 -3.07 16 22 H 0.16 2.32 8.03 -2.39 -0.02 2.30 16 23 C 0.53 15.30 7.67 88.00 0.67 15.98 16 24 O -0.50 -17.79 17.00 -2.85 -0.05 -17.84 16 25 H 0.09 1.50 8.14 -2.38 -0.02 1.49 16 26 H 0.08 1.81 7.84 -2.39 -0.02 1.79 16 27 H 0.09 1.76 7.88 -2.39 -0.02 1.74 16 28 H 0.03 1.11 7.65 -2.39 -0.02 1.09 16 29 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.36 6.92 -2.39 -0.02 2.35 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 33 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.08 3.06 4.68 -2.39 -0.01 3.05 16 Total: -1.00 -81.57 286.11 3.48 -78.10 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.14 Total: 12.25 kcal Atomic # 6 Polarization: 31.53 SS G_CDS: 5.11 Total: 36.64 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.64 Total: -96.82 kcal Atomic # 8 Polarization: -73.56 SS G_CDS: -0.16 Total: -73.72 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -81.57 3.48 -78.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.427 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds