Wall clock time and date at job start Mon Mar 30 2020 04:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34404 * 122.84976 * 2 1 4 4 O 1.21232 * 126.00636 * 356.69544 * 3 2 1 5 5 C 1.50466 * 107.98005 * 176.67524 * 3 2 1 6 6 H 1.08993 * 104.88983 * 258.00644 * 5 3 2 7 7 C 1.48608 * 115.01697 * 143.28569 * 5 3 2 8 8 C 1.51485 * 115.39814 * 265.38190 * 7 5 3 9 9 N 1.45498 * 110.67340 * 319.20137 * 8 7 5 10 10 C 1.34779 * 118.93023 * 228.19059 * 9 8 7 11 11 O 1.21684 * 119.99915 * 355.53415 * 10 9 8 12 12 C 1.46371 * 120.00273 * 175.54072 * 10 9 8 13 13 H 1.08002 * 120.00063 * 5.56008 * 12 10 9 14 14 C 1.40051 * 120.00324 * 185.55219 * 12 10 9 15 15 N 1.30675 * 119.99576 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00108 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46913 * 60.00869 * 16 14 12 18 18 H 1.48505 * 109.46753 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47203 * 300.00647 * 16 14 12 20 20 C 1.44722 * 122.14743 * 48.15980 * 9 8 7 21 21 C 1.51235 * 105.23874 * 8.78142 * 5 3 2 22 22 H 1.08998 * 110.01592 * 232.75074 * 21 5 3 23 23 C 1.34058 * 122.83918 * 179.97438 * 2 1 3 24 24 O 1.21227 * 125.60667 * 356.36366 * 23 2 1 25 25 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46567 * 300.01403 * 1 2 3 27 27 H 1.09006 * 109.46900 * 60.01271 * 1 2 3 28 28 H 1.09001 * 108.29741 * 26.92813 * 7 5 3 29 29 H 1.08997 * 108.30121 * 143.85911 * 7 5 3 30 30 H 1.09002 * 109.23959 * 198.88912 * 8 7 5 31 31 H 1.08996 * 109.19291 * 79.48784 * 8 7 5 32 32 H 0.96997 * 119.99891 * 179.97438 * 15 14 12 33 33 H 1.08995 * 108.56878 * 197.13511 * 20 9 8 34 34 H 1.09006 * 108.44106 * 79.42217 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1941 1.1291 0.0000 4 8 1.7581 2.2589 -0.0565 5 6 3.6463 0.7443 0.0830 6 1 3.9227 0.9166 1.1231 7 6 4.5696 1.6013 -0.7054 8 6 4.9023 1.0930 -2.0930 9 7 5.1093 -0.3471 -2.0766 10 6 6.2001 -0.8560 -2.6831 11 8 6.9495 -0.1237 -3.3018 12 6 6.4832 -2.2895 -2.5977 13 1 5.7732 -2.9530 -2.1264 14 6 7.6746 -2.8008 -3.1272 15 7 8.5338 -1.9980 -3.6972 16 14 8.0362 -4.6302 -3.0176 17 1 6.9742 -5.3880 -3.7268 18 1 9.3513 -4.9134 -3.6468 19 1 8.0709 -5.0433 -1.5917 20 6 4.1825 -1.2510 -1.4297 21 6 3.6701 -0.7577 -0.0916 22 1 4.2222 -1.2198 0.7268 23 6 2.1920 -1.1263 0.0005 24 8 1.7483 -2.2527 0.0635 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5141 0.8899 27 1 -0.3633 0.5137 -0.8902 28 1 4.1207 2.5899 -0.8015 29 1 5.5000 1.7059 -0.1473 30 1 5.8098 1.5823 -2.4468 31 1 4.0801 1.3300 -2.7682 32 1 9.3592 -2.3520 -4.0636 33 1 4.6801 -2.2090 -1.2789 34 1 3.3307 -1.4040 -2.0924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409433604.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:09 Heat of formation + Delta-G solvation = -85.847099 kcal Electronic energy + Delta-G solvation = -20807.465873 eV Core-core repulsion = 17513.092056 eV Total energy + Delta-G solvation = -3294.373816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.23992 -38.68857 -38.42800 -36.11809 -35.47854 -32.86451 -32.47469 -31.67204 -27.83573 -26.98858 -25.46670 -23.92954 -23.05069 -20.67256 -19.92291 -18.49978 -17.35799 -16.93428 -16.69844 -16.24044 -15.74512 -15.13452 -14.86357 -14.60073 -14.42735 -13.99087 -13.74929 -13.50403 -13.02434 -13.01090 -12.74990 -12.33505 -12.11563 -11.72525 -11.28799 -11.17795 -11.04722 -10.80565 -10.59574 -10.42785 -10.24714 -10.03386 -9.87498 -9.81705 -8.91344 -7.70950 -7.38263 -6.28022 -4.74423 1.45017 2.39108 2.64424 3.12490 3.18208 3.19597 3.91798 4.04144 4.09436 4.32262 4.45591 4.55650 4.75712 4.99339 5.12007 5.20532 5.30339 5.31921 5.42914 5.52026 5.63093 5.69118 5.88333 6.07568 6.14359 6.29894 6.48221 6.54180 6.67699 7.22057 7.37857 7.54744 7.70834 8.03661 8.20751 8.93887 9.26792 10.46489 10.65185 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.006054 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.992161 B = 4623.694517 C = 5426.347554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.581 5.581 3 C 0.537 3.463 4 O -0.480 6.480 5 C -0.111 4.111 6 H 0.106 0.894 7 C -0.113 4.113 8 C 0.121 3.879 9 N -0.634 5.634 10 C 0.555 3.445 11 O -0.572 6.572 12 C -0.547 4.547 13 H 0.075 0.925 14 C 0.089 3.911 15 N -0.765 5.765 16 Si 0.906 3.094 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.142 3.858 21 C -0.119 4.119 22 H 0.127 0.873 23 C 0.533 3.467 24 O -0.477 6.477 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.270 0.730 33 H 0.111 0.889 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 2.471 8.886 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C 0.327 3.673 4 O -0.351 6.351 5 C -0.132 4.132 6 H 0.123 0.877 7 C -0.151 4.151 8 C -0.003 4.003 9 N -0.371 5.371 10 C 0.362 3.638 11 O -0.454 6.454 12 C -0.583 4.583 13 H 0.093 0.907 14 C -0.131 4.131 15 N -0.394 5.394 16 Si 0.731 3.269 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.191 1.191 20 C 0.016 3.984 21 C -0.141 4.141 22 H 0.145 0.855 23 C 0.321 3.679 24 O -0.348 6.348 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.974 2.917 8.453 14.156 hybrid contribution -0.169 -0.899 0.293 0.960 sum -11.143 2.018 8.746 14.308 Atomic orbital electron populations 1.21911 0.77484 1.04627 1.03372 1.46831 1.09429 1.09590 1.66669 1.20810 0.89791 0.83649 0.73063 1.90735 1.78256 1.20475 1.45644 1.20187 0.92632 0.95645 1.04744 0.87658 1.20465 0.98512 0.98387 0.97763 1.20507 1.01869 0.84243 0.93704 1.47224 1.26636 1.04029 1.59241 1.18303 0.77853 0.89438 0.78228 1.90600 1.48209 1.61431 1.45156 1.20977 1.05279 0.91426 1.40604 0.90676 1.25722 0.95407 0.99137 0.92881 1.69992 1.07130 1.35742 1.26499 0.86446 0.78168 0.83030 0.79285 1.19137 1.20506 1.19136 1.20341 0.93848 0.95778 0.88466 1.21854 0.92813 0.95149 1.04328 0.85546 1.21331 0.89942 0.83612 0.73005 1.90752 1.77783 1.20869 1.45363 0.88933 0.90778 0.90578 0.89960 0.90358 0.88599 0.94445 0.91885 0.87101 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.69 59.85 0.64 1.30 16 2 N -0.58 -7.34 2.97 -122.33 -0.36 -7.70 16 3 C 0.54 7.22 7.67 -11.27 -0.09 7.13 16 4 O -0.48 -7.40 17.20 5.60 0.10 -7.30 16 5 C -0.11 -1.42 2.51 -94.92 -0.24 -1.66 16 6 H 0.11 1.08 7.99 -51.93 -0.41 0.67 16 7 C -0.11 -1.59 5.56 -29.64 -0.16 -1.76 16 8 C 0.12 2.23 6.42 -5.35 -0.03 2.19 16 9 N -0.63 -13.47 3.04 -179.36 -0.54 -14.02 16 10 C 0.56 14.97 7.55 -12.99 -0.10 14.87 16 11 O -0.57 -17.64 14.30 5.20 0.07 -17.57 16 12 C -0.55 -14.54 8.73 -35.63 -0.31 -14.86 16 13 H 0.08 1.81 5.65 -52.49 -0.30 1.51 16 14 C 0.09 2.37 5.50 -17.36 -0.10 2.28 16 15 N -0.77 -22.06 11.84 55.55 0.66 -21.40 16 16 Si 0.91 19.36 29.56 -169.99 -5.02 14.33 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 20 C 0.14 2.51 5.79 -5.74 -0.03 2.47 16 21 C -0.12 -1.64 3.48 -92.45 -0.32 -1.96 16 22 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 23 C 0.53 7.39 6.93 -10.35 -0.07 7.32 16 24 O -0.48 -7.66 17.26 5.60 0.10 -7.56 16 25 H 0.09 0.86 7.43 -51.93 -0.39 0.48 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.08 7.49 -51.93 -0.39 0.69 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.98 6.88 -51.93 -0.36 1.62 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 33 H 0.11 2.07 5.14 -51.93 -0.27 1.80 16 34 H 0.04 0.67 7.54 -51.93 -0.39 0.28 16 LS Contribution 285.47 15.07 4.30 4.30 Total: -1.00 -33.83 285.47 -5.27 -39.10 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.75 Total: 0.47 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: -0.82 Total: 17.34 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.25 Total: -43.12 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: 0.27 Total: -32.43 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.83 -5.27 -39.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433604.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.747 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds