Wall clock time and date at job start Mon Mar 30 2020 04:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34404 * 122.84976 * 2 1 4 4 O 1.21232 * 126.00636 * 356.69544 * 3 2 1 5 5 C 1.50466 * 107.98005 * 176.67524 * 3 2 1 6 6 H 1.08993 * 104.88983 * 258.00644 * 5 3 2 7 7 C 1.48608 * 115.01697 * 143.28569 * 5 3 2 8 8 C 1.51485 * 115.39814 * 265.38190 * 7 5 3 9 9 N 1.45498 * 110.67340 * 319.20137 * 8 7 5 10 10 C 1.34779 * 118.93023 * 228.19059 * 9 8 7 11 11 O 1.21684 * 119.99915 * 355.53415 * 10 9 8 12 12 C 1.46371 * 120.00273 * 175.54072 * 10 9 8 13 13 H 1.08002 * 120.00063 * 5.56008 * 12 10 9 14 14 C 1.40051 * 120.00324 * 185.55219 * 12 10 9 15 15 N 1.30675 * 119.99576 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00108 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46913 * 60.00869 * 16 14 12 18 18 H 1.48505 * 109.46753 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47203 * 300.00647 * 16 14 12 20 20 C 1.44722 * 122.14743 * 48.15980 * 9 8 7 21 21 C 1.51235 * 105.23874 * 8.78142 * 5 3 2 22 22 H 1.08998 * 110.01592 * 232.75074 * 21 5 3 23 23 C 1.34058 * 122.83918 * 179.97438 * 2 1 3 24 24 O 1.21227 * 125.60667 * 356.36366 * 23 2 1 25 25 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46567 * 300.01403 * 1 2 3 27 27 H 1.09006 * 109.46900 * 60.01271 * 1 2 3 28 28 H 1.09001 * 108.29741 * 26.92813 * 7 5 3 29 29 H 1.08997 * 108.30121 * 143.85911 * 7 5 3 30 30 H 1.09002 * 109.23959 * 198.88912 * 8 7 5 31 31 H 1.08996 * 109.19291 * 79.48784 * 8 7 5 32 32 H 0.96997 * 119.99891 * 179.97438 * 15 14 12 33 33 H 1.08995 * 108.56878 * 197.13511 * 20 9 8 34 34 H 1.09006 * 108.44106 * 79.42217 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1941 1.1291 0.0000 4 8 1.7581 2.2589 -0.0565 5 6 3.6463 0.7443 0.0830 6 1 3.9227 0.9166 1.1231 7 6 4.5696 1.6013 -0.7054 8 6 4.9023 1.0930 -2.0930 9 7 5.1093 -0.3471 -2.0766 10 6 6.2001 -0.8560 -2.6831 11 8 6.9495 -0.1237 -3.3018 12 6 6.4832 -2.2895 -2.5977 13 1 5.7732 -2.9530 -2.1264 14 6 7.6746 -2.8008 -3.1272 15 7 8.5338 -1.9980 -3.6972 16 14 8.0362 -4.6302 -3.0176 17 1 6.9742 -5.3880 -3.7268 18 1 9.3513 -4.9134 -3.6468 19 1 8.0709 -5.0433 -1.5917 20 6 4.1825 -1.2510 -1.4297 21 6 3.6701 -0.7577 -0.0916 22 1 4.2222 -1.2198 0.7268 23 6 2.1920 -1.1263 0.0005 24 8 1.7483 -2.2527 0.0635 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5141 0.8899 27 1 -0.3633 0.5137 -0.8902 28 1 4.1207 2.5899 -0.8015 29 1 5.5000 1.7059 -0.1473 30 1 5.8098 1.5823 -2.4468 31 1 4.0801 1.3300 -2.7682 32 1 9.3592 -2.3520 -4.0636 33 1 4.6801 -2.2090 -1.2789 34 1 3.3307 -1.4040 -2.0924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409433604.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:08 Heat of formation + Delta-G solvation = -110.410243 kcal Electronic energy + Delta-G solvation = -20808.531010 eV Core-core repulsion = 17513.092056 eV Total energy + Delta-G solvation = -3295.438954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.34584 -40.10881 -39.82600 -37.62776 -36.74563 -34.72259 -34.13762 -33.00950 -28.94672 -28.72907 -26.92261 -25.23793 -24.34696 -22.26091 -21.07106 -19.99281 -18.47366 -18.43640 -18.09198 -17.55967 -17.40177 -16.42794 -16.25145 -16.15344 -15.78668 -15.32929 -15.04391 -14.77680 -14.50275 -14.17205 -13.91314 -13.70197 -13.52601 -13.23082 -13.07868 -12.71944 -12.64716 -12.33345 -12.07753 -11.87159 -11.76170 -11.46932 -10.99659 -10.89002 -10.87403 -9.80498 -9.15536 -8.28166 -6.83497 0.35399 1.35928 1.44118 1.46044 1.57551 1.60525 2.25723 2.46164 2.69358 2.98448 3.02578 3.30710 3.54175 3.71592 4.03682 4.04256 4.21891 4.25092 4.35797 4.39927 4.44745 4.67884 4.71314 4.78427 4.79609 4.91862 5.00866 5.17529 5.40367 5.63987 5.75904 6.13078 6.16702 6.36828 6.65279 6.89682 7.35191 8.45026 8.66972 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.006054 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.992161 B = 4623.694517 C = 5426.347554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.579 5.579 3 C 0.543 3.457 4 O -0.498 6.498 5 C -0.113 4.113 6 H 0.145 0.855 7 C -0.101 4.101 8 C 0.118 3.882 9 N -0.632 5.632 10 C 0.540 3.460 11 O -0.625 6.625 12 C -0.569 4.569 13 H 0.097 0.903 14 C 0.033 3.967 15 N -0.819 5.819 16 Si 0.990 3.010 17 H -0.258 1.258 18 H -0.277 1.277 19 H -0.250 1.250 20 C 0.141 3.859 21 C -0.112 4.112 22 H 0.153 0.847 23 C 0.541 3.459 24 O -0.498 6.498 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.274 0.726 33 H 0.101 0.899 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.326 1.457 10.832 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.322 5.322 3 C 0.334 3.666 4 O -0.371 6.371 5 C -0.135 4.135 6 H 0.162 0.838 7 C -0.139 4.139 8 C -0.005 4.005 9 N -0.368 5.368 10 C 0.346 3.654 11 O -0.511 6.511 12 C -0.605 4.605 13 H 0.115 0.885 14 C -0.182 4.182 15 N -0.449 5.449 16 Si 0.809 3.191 17 H -0.182 1.182 18 H -0.201 1.201 19 H -0.174 1.174 20 C 0.016 3.984 21 C -0.134 4.134 22 H 0.171 0.829 23 C 0.330 3.670 24 O -0.371 6.371 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.321 1.918 10.437 16.261 hybrid contribution 0.139 -0.512 -0.344 0.633 sum -12.182 1.405 10.093 15.883 Atomic orbital electron populations 1.22140 0.75792 1.05378 1.04608 1.46834 1.10574 1.08918 1.65884 1.20798 0.89952 0.83405 0.72469 1.90741 1.78567 1.21162 1.46630 1.20183 0.92120 0.94447 1.06701 0.83753 1.20325 0.99564 0.99067 0.94958 1.20601 1.00560 0.82527 0.96862 1.46998 1.25671 1.05599 1.58534 1.18661 0.78719 0.89842 0.78162 1.90554 1.50576 1.62567 1.47437 1.21510 1.06161 0.91945 1.40899 0.88519 1.26913 0.94826 1.04777 0.91724 1.70164 1.07991 1.38694 1.28001 0.85181 0.78056 0.75716 0.80129 1.18200 1.20150 1.17358 1.20352 0.92737 0.94882 0.90440 1.21773 0.93088 0.96017 1.02530 0.82917 1.21176 0.89867 0.83458 0.72479 1.90753 1.78083 1.21748 1.46477 0.88448 0.88971 0.90011 0.88465 0.89426 0.91555 0.94226 0.91564 0.88114 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.04 10.69 127.77 1.37 2.41 16 2 N -0.58 -13.00 2.97 -778.38 -2.32 -15.32 16 3 C 0.54 12.98 7.67 87.64 0.67 13.66 16 4 O -0.50 -14.01 17.20 -2.88 -0.05 -14.06 16 5 C -0.11 -2.54 2.51 -13.58 -0.03 -2.58 16 6 H 0.14 2.27 7.99 -2.39 -0.02 2.25 16 7 C -0.10 -2.65 5.56 28.71 0.16 -2.49 16 8 C 0.12 4.38 6.42 86.07 0.55 4.93 16 9 N -0.63 -27.06 3.04 -839.61 -2.55 -29.61 16 10 C 0.54 29.92 7.55 86.36 0.65 30.57 16 11 O -0.62 -40.38 14.30 -4.30 -0.06 -40.44 16 12 C -0.57 -30.57 8.73 24.83 0.22 -30.36 16 13 H 0.10 4.60 5.65 -2.91 -0.02 4.58 16 14 C 0.03 1.79 5.50 85.30 0.47 2.26 16 15 N -0.82 -48.62 11.84 21.84 0.26 -48.36 16 16 Si 0.99 39.42 29.56 68.60 2.03 41.45 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 19 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 20 C 0.14 4.83 5.79 86.23 0.50 5.33 16 21 C -0.11 -2.77 3.48 -11.98 -0.04 -2.82 16 22 H 0.15 3.04 8.14 -2.39 -0.02 3.02 16 23 C 0.54 13.61 6.93 88.39 0.61 14.22 16 24 O -0.50 -14.90 17.26 -2.87 -0.05 -14.95 16 25 H 0.10 1.59 7.43 -2.39 -0.02 1.57 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.10 2.32 7.49 -2.39 -0.02 2.31 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 2.86 6.88 -2.39 -0.02 2.84 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.27 14.84 8.29 -92.71 -0.77 14.07 16 33 H 0.10 3.66 5.14 -2.39 -0.01 3.65 16 34 H 0.03 1.22 7.54 -2.38 -0.02 1.20 16 Total: -1.00 -75.73 285.47 3.52 -72.21 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.14 Total: 13.92 kcal Atomic # 6 Polarization: 30.02 SS G_CDS: 5.13 Total: 35.14 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.60 Total: -93.28 kcal Atomic # 8 Polarization: -69.28 SS G_CDS: -0.16 Total: -69.44 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -75.73 3.52 -72.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433604.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.200 kcal (2) G-P(sol) polarization free energy of solvation -75.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds