Wall clock time and date at job start Mon Mar 30 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35994 * 123.27363 * 2 1 4 4 O 1.21226 * 126.97017 * 12.69137 * 3 2 1 5 5 C 1.49667 * 106.06172 * 192.66523 * 3 2 1 6 6 H 1.09004 * 110.02369 * 85.04619 * 5 3 2 7 7 C 1.51412 * 119.85242 * 214.01808 * 5 3 2 8 8 N 1.44806 * 107.30747 * 171.28565 * 7 5 3 9 9 C 1.34772 * 119.05236 * 130.25754 * 8 7 5 10 10 O 1.21694 * 119.99927 * 355.52389 * 9 8 7 11 11 C 1.46375 * 120.00197 * 175.52034 * 9 8 7 12 12 H 1.07992 * 119.99869 * 4.96411 * 11 9 8 13 13 C 1.40050 * 119.99725 * 184.96207 * 11 9 8 14 14 N 1.30674 * 120.00289 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99828 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47112 * 89.99914 * 15 13 11 17 17 H 1.48494 * 109.47553 * 210.00120 * 15 13 11 18 18 H 1.48503 * 109.46905 * 330.00314 * 15 13 11 19 19 C 1.46532 * 121.54706 * 311.14852 * 8 7 5 20 20 C 1.54394 * 111.05375 * 44.79916 * 19 8 7 21 21 C 1.51365 * 106.18833 * 309.03004 * 20 19 8 22 22 H 1.09000 * 109.94126 * 307.81007 * 21 20 19 23 23 C 1.35996 * 123.27224 * 180.02562 * 2 1 3 24 24 O 1.21231 * 126.97970 * 12.60316 * 23 2 1 25 25 H 1.09000 * 109.47444 * 269.98256 * 1 2 3 26 26 H 1.09000 * 109.46889 * 29.98497 * 1 2 3 27 27 H 1.08996 * 109.47033 * 149.97963 * 1 2 3 28 28 H 1.08996 * 110.20527 * 291.76206 * 7 5 3 29 29 H 1.08998 * 110.20384 * 53.69628 * 7 5 3 30 30 H 0.96998 * 119.99650 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.16385 * 284.39157 * 19 8 7 32 32 H 1.09002 * 109.15958 * 165.20452 * 19 8 7 33 33 H 1.08993 * 110.09855 * 189.86440 * 20 19 8 34 34 H 1.08998 * 110.10117 * 68.19840 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2112 1.1370 0.0000 4 8 1.8212 2.2649 0.2128 5 6 3.6116 0.7133 -0.3153 6 1 3.7471 0.6462 -1.3948 7 6 4.7796 1.4473 0.3087 8 7 5.9777 0.6975 -0.0067 9 6 7.0396 1.3474 -0.5227 10 8 6.9560 2.5309 -0.7934 11 6 8.2935 0.6298 -0.7576 12 1 8.3444 -0.4364 -0.5934 13 6 9.4272 1.3258 -1.1955 14 7 9.3657 2.6160 -1.3938 15 14 11.0277 0.4101 -1.4946 16 1 11.0754 -0.0561 -2.9038 17 1 12.1736 1.3180 -1.2345 18 1 11.1063 -0.7598 -0.5833 19 6 6.0536 -0.7505 0.2043 20 6 4.7771 -1.4531 -0.3063 21 6 3.6114 -0.7129 0.3136 22 1 3.7462 -0.6443 1.3931 23 6 2.2112 -1.1370 -0.0005 24 8 1.8210 -2.2651 -0.2123 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 4.8448 2.4595 -0.0903 29 1 4.6710 1.4749 1.3929 30 1 10.1509 3.0979 -1.6974 31 1 6.1710 -0.9513 1.2691 32 1 6.9175 -1.1451 -0.3306 33 1 4.7707 -2.4956 0.0118 34 1 4.7248 -1.3914 -1.3932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409433605.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:11 Heat of formation + Delta-G solvation = -82.028367 kcal Electronic energy + Delta-G solvation = -20628.417240 eV Core-core repulsion = 17334.209016 eV Total energy + Delta-G solvation = -3294.208224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09492 -38.60451 -38.51291 -36.18230 -35.45081 -32.73632 -32.38620 -31.02625 -28.27663 -26.23299 -25.68189 -23.57784 -22.59974 -21.04770 -19.43139 -19.17813 -17.42233 -17.08108 -16.44754 -16.06397 -15.76280 -14.94896 -14.87307 -14.76171 -14.20011 -14.02371 -13.72319 -13.39111 -13.19146 -12.83813 -12.73176 -12.42583 -11.75575 -11.68683 -11.42298 -11.30110 -11.04759 -10.98327 -10.76881 -10.31700 -10.23457 -9.95954 -9.92823 -9.69732 -8.93545 -7.70811 -7.44602 -6.28677 -4.74989 1.47716 2.40395 2.48374 3.09171 3.16787 3.19329 3.78529 4.02160 4.24652 4.30057 4.46451 4.56112 4.84945 4.98802 5.11096 5.19119 5.28229 5.38058 5.47673 5.48899 5.57731 5.66056 5.86618 5.97162 6.18959 6.33069 6.39201 6.50005 6.59554 7.21017 7.37001 7.50579 7.71740 8.01623 8.19836 8.93102 9.24950 10.46040 10.64813 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.005236 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.817702 B = 5346.360639 C = 5988.885221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.599 5.599 3 C 0.548 3.452 4 O -0.467 6.467 5 C -0.145 4.145 6 H 0.125 0.875 7 C 0.148 3.852 8 N -0.641 5.641 9 C 0.554 3.446 10 O -0.572 6.572 11 C -0.544 4.544 12 H 0.075 0.925 13 C 0.088 3.912 14 N -0.765 5.765 15 Si 0.907 3.093 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.122 3.878 20 C -0.111 4.111 21 C -0.133 4.133 22 H 0.122 0.878 23 C 0.546 3.454 24 O -0.477 6.477 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.270 0.730 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 -8.253 3.073 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.337 3.663 4 O -0.336 6.336 5 C -0.168 4.168 6 H 0.143 0.857 7 C 0.022 3.978 8 N -0.379 5.379 9 C 0.360 3.640 10 O -0.454 6.454 11 C -0.580 4.580 12 H 0.093 0.907 13 C -0.133 4.133 14 N -0.393 5.393 15 Si 0.732 3.268 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.002 4.002 20 C -0.150 4.150 21 C -0.154 4.154 22 H 0.140 0.860 23 C 0.336 3.664 24 O -0.347 6.347 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.472 -7.394 2.890 13.951 hybrid contribution 0.443 -0.555 -0.131 0.722 sum -11.029 -7.949 2.759 13.872 Atomic orbital electron populations 1.21853 0.77799 1.04255 1.03186 1.47865 1.08995 1.09122 1.68629 1.20710 0.88586 0.83273 0.73713 1.90752 1.78888 1.20035 1.43947 1.22669 0.93282 0.96533 1.04282 0.85709 1.20110 0.82437 0.97607 0.97620 1.47678 1.13753 1.06487 1.69962 1.18349 0.82556 0.86610 0.76486 1.90616 1.82904 1.16490 1.55438 1.20996 0.93825 0.95173 1.48034 0.90661 1.25741 0.99953 0.94570 0.93018 1.70005 1.29496 1.07697 1.32121 0.86378 0.81174 0.79990 0.79303 1.19687 1.20434 1.18795 1.21576 0.96939 0.81817 0.99855 1.21782 0.92710 0.99366 1.01164 1.22202 0.92753 0.96781 1.03639 0.86002 1.20794 0.88811 0.83273 0.73503 1.90727 1.79118 1.20113 1.44756 0.91338 0.89967 0.89720 0.87976 0.93267 0.91940 0.93415 0.88085 0.89791 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.76 59.85 0.64 1.32 16 2 N -0.60 -7.44 3.07 -122.87 -0.38 -7.82 16 3 C 0.55 7.89 7.74 -10.93 -0.08 7.81 16 4 O -0.47 -7.94 17.83 5.60 0.10 -7.84 16 5 C -0.15 -2.14 2.59 -91.54 -0.24 -2.38 16 6 H 0.13 1.89 7.87 -51.93 -0.41 1.48 16 7 C 0.15 2.69 5.98 -5.75 -0.03 2.65 16 8 N -0.64 -13.12 2.98 -176.76 -0.53 -13.65 16 9 C 0.55 14.71 7.56 -12.99 -0.10 14.61 16 10 O -0.57 -17.62 14.31 5.19 0.07 -17.55 16 11 C -0.54 -14.24 8.77 -35.63 -0.31 -14.55 16 12 H 0.08 1.76 5.71 -52.49 -0.30 1.46 16 13 C 0.09 2.32 5.50 -17.37 -0.10 2.22 16 14 N -0.76 -22.02 11.84 55.55 0.66 -21.36 16 15 Si 0.91 19.10 29.56 -169.99 -5.02 14.07 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 19 C 0.12 1.96 6.11 -3.29 -0.02 1.94 16 20 C -0.11 -1.43 5.99 -26.83 -0.16 -1.59 16 21 C -0.13 -1.68 2.38 -91.57 -0.22 -1.90 16 22 H 0.12 1.40 7.88 -51.93 -0.41 0.99 16 23 C 0.55 7.12 7.75 -10.94 -0.08 7.03 16 24 O -0.48 -7.15 17.67 5.60 0.10 -7.05 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.08 0.74 7.89 -51.93 -0.41 0.33 16 28 H 0.10 2.17 6.90 -51.93 -0.36 1.82 16 29 H 0.05 0.82 8.04 -51.93 -0.42 0.41 16 30 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.72 5.37 -51.93 -0.28 1.44 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 LS Contribution 288.07 15.07 4.34 4.34 Total: -1.00 -33.61 288.07 -5.17 -38.78 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.81 Total: 0.92 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -0.70 Total: 17.16 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.25 Total: -42.83 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: 0.27 Total: -32.45 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.61 -5.17 -38.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433605.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.246 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds