Wall clock time and date at job start Mon Mar 30 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35994 * 123.27363 * 2 1 4 4 O 1.21226 * 126.97017 * 12.69137 * 3 2 1 5 5 C 1.49667 * 106.06172 * 192.66523 * 3 2 1 6 6 H 1.09004 * 110.02369 * 85.04619 * 5 3 2 7 7 C 1.51412 * 119.85242 * 214.01808 * 5 3 2 8 8 N 1.44806 * 107.30747 * 171.28565 * 7 5 3 9 9 C 1.34772 * 119.05236 * 130.25754 * 8 7 5 10 10 O 1.21694 * 119.99927 * 355.52389 * 9 8 7 11 11 C 1.46375 * 120.00197 * 175.52034 * 9 8 7 12 12 H 1.07992 * 119.99869 * 4.96411 * 11 9 8 13 13 C 1.40050 * 119.99725 * 184.96207 * 11 9 8 14 14 N 1.30674 * 120.00289 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 119.99828 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47112 * 89.99914 * 15 13 11 17 17 H 1.48494 * 109.47553 * 210.00120 * 15 13 11 18 18 H 1.48503 * 109.46905 * 330.00314 * 15 13 11 19 19 C 1.46532 * 121.54706 * 311.14852 * 8 7 5 20 20 C 1.54394 * 111.05375 * 44.79916 * 19 8 7 21 21 C 1.51365 * 106.18833 * 309.03004 * 20 19 8 22 22 H 1.09000 * 109.94126 * 307.81007 * 21 20 19 23 23 C 1.35996 * 123.27224 * 180.02562 * 2 1 3 24 24 O 1.21231 * 126.97970 * 12.60316 * 23 2 1 25 25 H 1.09000 * 109.47444 * 269.98256 * 1 2 3 26 26 H 1.09000 * 109.46889 * 29.98497 * 1 2 3 27 27 H 1.08996 * 109.47033 * 149.97963 * 1 2 3 28 28 H 1.08996 * 110.20527 * 291.76206 * 7 5 3 29 29 H 1.08998 * 110.20384 * 53.69628 * 7 5 3 30 30 H 0.96998 * 119.99650 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.16385 * 284.39157 * 19 8 7 32 32 H 1.09002 * 109.15958 * 165.20452 * 19 8 7 33 33 H 1.08993 * 110.09855 * 189.86440 * 20 19 8 34 34 H 1.08998 * 110.10117 * 68.19840 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2112 1.1370 0.0000 4 8 1.8212 2.2649 0.2128 5 6 3.6116 0.7133 -0.3153 6 1 3.7471 0.6462 -1.3948 7 6 4.7796 1.4473 0.3087 8 7 5.9777 0.6975 -0.0067 9 6 7.0396 1.3474 -0.5227 10 8 6.9560 2.5309 -0.7934 11 6 8.2935 0.6298 -0.7576 12 1 8.3444 -0.4364 -0.5934 13 6 9.4272 1.3258 -1.1955 14 7 9.3657 2.6160 -1.3938 15 14 11.0277 0.4101 -1.4946 16 1 11.0754 -0.0561 -2.9038 17 1 12.1736 1.3180 -1.2345 18 1 11.1063 -0.7598 -0.5833 19 6 6.0536 -0.7505 0.2043 20 6 4.7771 -1.4531 -0.3063 21 6 3.6114 -0.7129 0.3136 22 1 3.7462 -0.6443 1.3931 23 6 2.2112 -1.1370 -0.0005 24 8 1.8210 -2.2651 -0.2123 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 4.8448 2.4595 -0.0903 29 1 4.6710 1.4749 1.3929 30 1 10.1509 3.0979 -1.6974 31 1 6.1710 -0.9513 1.2691 32 1 6.9175 -1.1451 -0.3306 33 1 4.7707 -2.4956 0.0118 34 1 4.7248 -1.3914 -1.3932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409433605.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:11 Heat of formation + Delta-G solvation = -106.557900 kcal Electronic energy + Delta-G solvation = -20629.480920 eV Core-core repulsion = 17334.209016 eV Total energy + Delta-G solvation = -3295.271904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.24735 -40.14327 -39.75925 -37.73718 -36.75196 -34.67525 -33.87026 -32.36670 -29.59011 -27.93068 -26.89002 -24.98892 -23.81991 -22.39073 -21.01351 -20.43347 -18.70800 -18.32173 -17.90886 -17.65031 -17.14251 -16.40334 -16.18907 -16.07478 -15.71122 -15.46457 -15.13137 -14.66522 -14.33385 -14.13739 -13.88160 -13.58584 -13.45738 -13.07427 -13.03536 -12.84065 -12.69660 -12.42801 -11.99604 -11.98715 -11.85621 -11.20003 -11.14290 -10.90094 -10.77420 -9.77070 -9.15858 -8.26273 -6.80925 0.33918 1.34728 1.38724 1.45351 1.45400 1.60790 2.26248 2.45082 2.63673 2.87379 3.15299 3.28158 3.61778 3.78593 3.94201 4.13147 4.17294 4.20314 4.40415 4.44277 4.50372 4.70262 4.71695 4.75742 4.86465 4.89492 5.01898 5.28273 5.44005 5.53123 5.78935 6.09033 6.19527 6.38099 6.62727 6.91818 7.38790 8.48319 8.69715 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.005236 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.817702 B = 5346.360639 C = 5988.885221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.593 5.593 3 C 0.558 3.442 4 O -0.496 6.496 5 C -0.142 4.142 6 H 0.119 0.881 7 C 0.149 3.851 8 N -0.640 5.640 9 C 0.537 3.463 10 O -0.630 6.630 11 C -0.565 4.565 12 H 0.102 0.898 13 C 0.029 3.971 14 N -0.823 5.823 15 Si 0.993 3.007 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.243 1.243 19 C 0.117 3.883 20 C -0.099 4.099 21 C -0.121 4.121 22 H 0.143 0.857 23 C 0.558 3.442 24 O -0.489 6.489 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.273 0.727 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.419 -11.305 3.783 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.347 3.653 4 O -0.367 6.367 5 C -0.164 4.164 6 H 0.137 0.863 7 C 0.024 3.976 8 N -0.376 5.376 9 C 0.343 3.657 10 O -0.517 6.517 11 C -0.601 4.601 12 H 0.120 0.880 13 C -0.186 4.186 14 N -0.453 5.453 15 Si 0.813 3.187 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.166 1.166 19 C -0.005 4.005 20 C -0.138 4.138 21 C -0.142 4.142 22 H 0.160 0.840 23 C 0.348 3.652 24 O -0.361 6.361 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.880 -10.522 3.624 16.278 hybrid contribution 0.445 0.392 -0.318 0.673 sum -11.435 -10.131 3.306 15.630 Atomic orbital electron populations 1.22117 0.75751 1.05128 1.04635 1.47794 1.10245 1.08119 1.67718 1.20477 0.88439 0.83234 0.73126 1.90749 1.79253 1.21262 1.45458 1.22440 0.92473 0.97677 1.03827 0.86314 1.20040 0.83097 0.95853 0.98586 1.47485 1.13043 1.08462 1.68580 1.18755 0.84315 0.86194 0.76429 1.90571 1.84316 1.18969 1.57851 1.21569 0.94024 0.96605 1.47870 0.87988 1.26985 1.04387 0.95267 0.91971 1.70197 1.30996 1.10200 1.33901 0.85078 0.75212 0.78747 0.79680 1.18886 1.20424 1.16598 1.21801 0.98457 0.78935 1.01354 1.21687 0.90747 1.00547 1.00812 1.22208 0.92809 0.94541 1.04664 0.83963 1.20623 0.88629 0.82989 0.72948 1.90740 1.79292 1.20575 1.45467 0.89657 0.89499 0.88504 0.92107 0.91540 0.91738 0.91070 0.89019 0.86586 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 10.76 127.77 1.37 2.43 16 2 N -0.59 -13.34 3.07 -778.08 -2.39 -15.73 16 3 C 0.56 15.46 7.74 87.14 0.67 16.14 16 4 O -0.50 -16.75 17.83 -2.86 -0.05 -16.80 16 5 C -0.14 -4.07 2.59 -11.39 -0.03 -4.10 16 6 H 0.12 3.58 7.87 -2.38 -0.02 3.57 16 7 C 0.15 5.51 5.98 86.18 0.52 6.03 16 8 N -0.64 -26.26 2.98 -831.36 -2.47 -28.73 16 9 C 0.54 29.39 7.56 86.36 0.65 30.04 16 10 O -0.63 -41.00 14.31 -4.33 -0.06 -41.07 16 11 C -0.56 -29.73 8.77 24.83 0.22 -29.51 16 12 H 0.10 4.63 5.71 -2.91 -0.02 4.61 16 13 C 0.03 1.55 5.50 85.30 0.47 2.02 16 14 N -0.82 -49.16 11.84 21.84 0.26 -48.90 16 15 Si 0.99 38.91 29.56 68.60 2.03 40.94 16 16 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 18 H -0.24 -8.62 7.11 99.48 0.71 -7.91 16 19 C 0.12 3.49 6.11 86.85 0.53 4.02 16 20 C -0.10 -2.24 5.99 30.53 0.18 -2.06 16 21 C -0.12 -2.72 2.38 -11.41 -0.03 -2.75 16 22 H 0.14 2.71 7.88 -2.39 -0.02 2.69 16 23 C 0.56 12.82 7.75 87.13 0.68 13.49 16 24 O -0.49 -13.01 17.67 -2.88 -0.05 -13.06 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 1.38 8.07 -2.39 -0.02 1.36 16 27 H 0.10 1.40 7.89 -2.39 -0.02 1.38 16 28 H 0.06 2.76 6.90 -2.39 -0.02 2.75 16 29 H 0.07 2.20 8.04 -2.39 -0.02 2.18 16 30 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.93 5.37 -2.39 -0.01 2.92 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 1.71 7.91 -2.39 -0.02 1.69 16 Total: -1.00 -76.31 288.07 3.63 -72.68 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.13 Total: 14.91 kcal Atomic # 6 Polarization: 30.53 SS G_CDS: 5.24 Total: 35.77 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -4.61 Total: -93.36 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -0.16 Total: -70.93 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -76.31 3.63 -72.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409433605.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.876 kcal (2) G-P(sol) polarization free energy of solvation -76.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds