Wall clock time and date at job start Mon Mar 30 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38242 * 119.97419 * 269.72130 * 4 3 2 6 6 C 1.38202 * 120.02539 * 179.72858 * 5 4 3 7 7 C 1.38460 * 119.96975 * 0.57203 * 6 5 4 8 8 F 1.35102 * 120.02667 * 179.68078 * 7 6 5 9 9 C 1.38463 * 119.94982 * 359.70394 * 7 6 5 10 10 C 1.38191 * 119.97379 * 0.02562 * 9 7 6 11 11 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 12 12 O 1.21593 * 120.00167 * 179.97438 * 11 2 1 13 13 N 1.34780 * 120.00532 * 359.97438 * 11 2 1 14 14 C 1.46496 * 120.00367 * 179.97438 * 13 11 2 15 15 C 1.50701 * 109.47414 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99799 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99934 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47027 * 60.00171 * 19 17 15 21 21 H 1.48500 * 109.47261 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46998 * 300.00381 * 19 17 15 23 23 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 26 26 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 27 27 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 28 28 H 1.08002 * 119.98949 * 359.97438 * 5 4 3 29 29 H 1.07994 * 120.01565 * 180.25581 * 6 5 4 30 30 H 1.07998 * 120.01059 * 179.97438 * 9 7 6 31 31 H 1.08001 * 119.98451 * 180.02562 * 10 9 7 32 32 H 0.97000 * 119.99501 * 0.02562 * 13 11 2 33 33 H 1.09004 * 109.47298 * 300.00557 * 14 13 11 34 34 H 1.09000 * 109.47160 * 60.00094 * 14 13 11 35 35 H 0.96991 * 120.00138 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5295 2.5065 2.0701 6 6 1.7561 2.9014 3.3750 7 6 2.9099 2.5023 4.0280 8 9 3.1356 2.8930 5.3014 9 6 3.8326 1.7028 3.3747 10 6 3.6012 1.3047 2.0718 11 6 2.1388 -1.1672 -0.0005 12 8 3.3548 -1.1673 -0.0010 13 7 1.4650 -2.3344 -0.0005 14 6 2.1974 -3.6032 -0.0017 15 6 1.2181 -4.7486 -0.0008 16 1 0.1562 -4.5512 0.0001 17 6 1.6776 -6.0485 -0.0021 18 7 2.9707 -6.2889 -0.0037 19 14 0.4637 -7.4683 -0.0018 20 1 -0.3913 -7.3888 -1.2134 21 1 1.2062 -8.7544 -0.0028 22 1 -0.3888 -7.3904 1.2117 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 3.1500 1.1383 -0.5139 27 1 1.6085 2.0284 -0.5138 28 1 0.6321 2.8221 1.5588 29 1 1.0359 3.5252 3.8834 30 1 4.7332 1.3913 3.8830 31 1 4.3206 0.6808 1.5622 32 1 0.4949 -2.3344 -0.0005 33 1 2.8235 -3.6605 -0.8921 34 1 2.8247 -3.6613 0.8878 35 1 3.2940 -7.2033 -0.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426422334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:46 Heat of formation + Delta-G solvation = -48.152555 kcal Electronic energy + Delta-G solvation = -19498.033610 eV Core-core repulsion = 16217.667142 eV Total energy + Delta-G solvation = -3280.366469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.93857 -39.85755 -38.68234 -35.24630 -34.21886 -32.45018 -31.16601 -31.15820 -27.40660 -27.02721 -25.13046 -23.05083 -22.54976 -21.42710 -19.32157 -17.99300 -17.65480 -16.37043 -16.12597 -15.91059 -15.88679 -15.59340 -14.82543 -14.62511 -13.90946 -13.72998 -13.54867 -13.38451 -13.13046 -13.02187 -12.51095 -12.14580 -11.98685 -11.90500 -11.64515 -11.57199 -11.00572 -10.93966 -10.86683 -10.28534 -9.43855 -9.37807 -9.13315 -8.72332 -8.66631 -8.43988 -7.74792 -6.14843 -4.21540 1.04760 1.21337 3.13728 3.26016 3.31065 3.32716 3.69737 3.88697 4.21147 4.32180 4.61500 4.78403 4.80907 4.85925 5.14309 5.19726 5.21223 5.25004 5.49281 5.52590 5.75464 5.76760 5.93000 5.96601 6.06576 6.25502 6.50722 6.72383 6.86482 7.10369 7.51017 7.52768 7.57624 7.84585 8.02274 8.75433 8.89745 9.31178 9.47598 10.95374 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.004000 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.523995 B = 6998.959476 C = 7332.289243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.639 5.639 3 C 0.175 3.825 4 C -0.113 4.113 5 C -0.080 4.080 6 C -0.161 4.161 7 C 0.094 3.906 8 F -0.144 7.144 9 C -0.156 4.156 10 C -0.061 4.061 11 C 0.695 3.305 12 O -0.597 6.597 13 N -0.728 5.728 14 C 0.267 3.733 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.386 0.614 33 H 0.025 0.975 34 H 0.024 0.976 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 18.404 2.830 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.051 3.949 4 C -0.115 4.115 5 C -0.099 4.099 6 C -0.180 4.180 7 C 0.075 3.925 8 F -0.123 7.123 9 C -0.175 4.175 10 C -0.079 4.079 11 C 0.397 3.603 12 O -0.476 6.476 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.160 0.840 32 H 0.220 0.780 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.987 18.180 2.852 18.829 hybrid contribution -1.135 -0.797 0.419 1.448 sum -5.121 17.383 3.270 18.414 Atomic orbital electron populations 1.21669 0.80387 1.02699 1.01377 1.47089 1.05895 1.04720 1.80030 1.20108 0.98660 0.84469 0.91618 1.20477 0.94808 0.97944 0.98222 1.20880 0.98659 0.96790 0.93553 1.21055 0.97205 1.03682 0.96069 1.17769 0.96220 0.98972 0.79571 1.91481 1.94807 1.89441 1.36564 1.21214 1.00203 0.99952 0.96137 1.21207 0.97198 0.96280 0.93257 1.16089 0.85542 0.80448 0.78262 1.90838 1.11671 1.86210 1.58868 1.45867 1.09691 1.05678 1.76854 1.18974 0.91996 0.76892 0.97572 1.21181 0.92913 0.90757 1.53267 0.92093 1.24932 0.95393 0.98863 0.94738 1.69965 1.12566 1.20893 1.48850 0.86480 0.80744 0.81045 0.78655 1.20083 1.21061 1.20102 0.93184 0.91404 0.91164 0.88829 0.90041 0.85285 0.85049 0.84820 0.83969 0.77962 0.95741 0.95773 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 10.25 59.85 0.61 1.52 16 2 N -0.64 -9.49 2.86 -188.73 -0.54 -10.03 16 3 C 0.18 2.17 5.58 -5.19 -0.03 2.14 16 4 C -0.11 -1.41 5.46 -104.62 -0.57 -1.98 16 5 C -0.08 -0.84 9.70 -39.59 -0.38 -1.22 16 6 C -0.16 -1.76 10.03 -39.51 -0.40 -2.16 16 7 C 0.09 1.19 7.30 -39.42 -0.29 0.90 16 8 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 9 C -0.16 -2.04 10.03 -39.52 -0.40 -2.43 16 10 C -0.06 -0.85 9.70 -39.60 -0.38 -1.23 16 11 C 0.70 14.19 8.28 -86.92 -0.72 13.47 16 12 O -0.60 -14.24 15.45 5.28 0.08 -14.15 16 13 N -0.73 -15.67 5.41 -66.41 -0.36 -16.03 16 14 C 0.27 7.14 5.43 -5.20 -0.03 7.12 16 15 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 16 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 19 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 25 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 26 H 0.09 1.29 7.36 -51.93 -0.38 0.91 16 27 H 0.08 0.72 7.83 -51.93 -0.41 0.31 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.14 2.18 7.58 -52.49 -0.40 1.78 16 32 H 0.39 7.21 6.05 -40.82 -0.25 6.96 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -32.53 309.19 -7.65 -40.18 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.24 Total: 4.09 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.00 Total: 2.71 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.16 Total: -51.46 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.08 Total: -14.15 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.53 -7.65 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426422334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.976 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds