Wall clock time and date at job start Mon Mar 30 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38242 * 119.97419 * 269.72130 * 4 3 2 6 6 C 1.38202 * 120.02539 * 179.72858 * 5 4 3 7 7 C 1.38460 * 119.96975 * 0.57203 * 6 5 4 8 8 F 1.35102 * 120.02667 * 179.68078 * 7 6 5 9 9 C 1.38463 * 119.94982 * 359.70394 * 7 6 5 10 10 C 1.38191 * 119.97379 * 0.02562 * 9 7 6 11 11 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 12 12 O 1.21593 * 120.00167 * 179.97438 * 11 2 1 13 13 N 1.34780 * 120.00532 * 359.97438 * 11 2 1 14 14 C 1.46496 * 120.00367 * 179.97438 * 13 11 2 15 15 C 1.50701 * 109.47414 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99799 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99934 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47027 * 60.00171 * 19 17 15 21 21 H 1.48500 * 109.47261 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46998 * 300.00381 * 19 17 15 23 23 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 24 24 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 25 25 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 26 26 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 27 27 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 28 28 H 1.08002 * 119.98949 * 359.97438 * 5 4 3 29 29 H 1.07994 * 120.01565 * 180.25581 * 6 5 4 30 30 H 1.07998 * 120.01059 * 179.97438 * 9 7 6 31 31 H 1.08001 * 119.98451 * 180.02562 * 10 9 7 32 32 H 0.97000 * 119.99501 * 0.02562 * 13 11 2 33 33 H 1.09004 * 109.47298 * 300.00557 * 14 13 11 34 34 H 1.09000 * 109.47160 * 60.00094 * 14 13 11 35 35 H 0.96991 * 120.00138 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5295 2.5065 2.0701 6 6 1.7561 2.9014 3.3750 7 6 2.9099 2.5023 4.0280 8 9 3.1356 2.8930 5.3014 9 6 3.8326 1.7028 3.3747 10 6 3.6012 1.3047 2.0718 11 6 2.1388 -1.1672 -0.0005 12 8 3.3548 -1.1673 -0.0010 13 7 1.4650 -2.3344 -0.0005 14 6 2.1974 -3.6032 -0.0017 15 6 1.2181 -4.7486 -0.0008 16 1 0.1562 -4.5512 0.0001 17 6 1.6776 -6.0485 -0.0021 18 7 2.9707 -6.2889 -0.0037 19 14 0.4637 -7.4683 -0.0018 20 1 -0.3913 -7.3888 -1.2134 21 1 1.2062 -8.7544 -0.0028 22 1 -0.3888 -7.3904 1.2117 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 3.1500 1.1383 -0.5139 27 1 1.6085 2.0284 -0.5138 28 1 0.6321 2.8221 1.5588 29 1 1.0359 3.5252 3.8834 30 1 4.7332 1.3913 3.8830 31 1 4.3206 0.6808 1.5622 32 1 0.4949 -2.3344 -0.0005 33 1 2.8235 -3.6605 -0.8921 34 1 2.8247 -3.6613 0.8878 35 1 3.2940 -7.2033 -0.0043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426422334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:45 Heat of formation + Delta-G solvation = -69.199244 kcal Electronic energy + Delta-G solvation = -19498.946263 eV Core-core repulsion = 16217.667142 eV Total energy + Delta-G solvation = -3281.279122 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.93085 -41.20926 -39.84165 -36.60816 -36.10412 -34.37823 -32.31406 -32.09349 -29.29367 -28.04791 -26.48095 -24.42392 -23.98087 -22.56098 -20.94879 -19.46191 -18.65304 -17.99320 -17.47778 -17.20946 -17.14448 -16.63381 -16.51729 -16.02067 -15.10319 -15.05285 -14.91708 -14.49565 -14.32883 -14.32015 -14.01258 -13.64584 -13.37585 -13.12535 -12.91522 -12.77698 -12.65831 -12.56506 -12.20142 -11.90164 -11.48623 -11.12909 -10.77821 -10.06571 -10.00361 -9.64839 -9.38000 -8.27443 -6.44202 0.07204 0.27980 1.43773 1.48307 1.56319 1.87355 2.27221 2.39409 2.67538 3.07442 3.26552 3.33464 3.75636 3.83818 3.96748 4.16796 4.34868 4.37014 4.56728 4.68301 4.81811 4.95107 4.97407 5.02544 5.08635 5.14602 5.26708 5.28594 5.46196 5.55876 5.64109 5.75722 5.86735 5.92878 6.14008 6.67393 7.22587 7.26650 7.74942 8.84723 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.025740 B = 0.004000 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.523995 B = 6998.959476 C = 7332.289243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.626 5.626 3 C 0.172 3.828 4 C -0.120 4.120 5 C -0.065 4.065 6 C -0.154 4.154 7 C 0.080 3.920 8 F -0.149 7.149 9 C -0.170 4.170 10 C -0.085 4.085 11 C 0.688 3.312 12 O -0.642 6.642 13 N -0.725 5.725 14 C 0.287 3.713 15 C -0.556 4.556 16 H 0.083 0.917 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.260 1.260 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.173 0.827 29 H 0.162 0.838 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.403 0.597 33 H -0.015 1.015 34 H -0.019 1.019 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 19.846 2.714 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.363 5.363 3 C 0.050 3.950 4 C -0.122 4.122 5 C -0.083 4.083 6 C -0.172 4.172 7 C 0.061 3.939 8 F -0.128 7.128 9 C -0.189 4.189 10 C -0.104 4.104 11 C 0.389 3.611 12 O -0.524 6.524 13 N -0.380 5.380 14 C 0.164 3.836 15 C -0.594 4.594 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.187 1.187 23 H 0.079 0.921 24 H 0.131 0.869 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.151 0.849 28 H 0.190 0.810 29 H 0.180 0.820 30 H 0.151 0.849 31 H 0.131 0.869 32 H 0.240 0.760 33 H 0.003 0.997 34 H -0.001 1.001 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.958 19.698 2.736 21.420 hybrid contribution 0.118 -1.122 0.470 1.222 sum -7.840 18.576 3.206 20.416 Atomic orbital electron populations 1.22019 0.77264 1.04813 1.02770 1.47107 1.07764 1.03398 1.78069 1.20368 0.98501 0.84203 0.91972 1.20554 0.94737 0.98588 0.98280 1.21263 0.99018 0.94859 0.93156 1.21447 0.96581 1.02936 0.96234 1.17978 0.97021 0.99357 0.79587 1.91468 1.94946 1.89485 1.36870 1.21254 1.00884 1.00704 0.96075 1.21109 0.98109 0.97306 0.93911 1.16351 0.85148 0.81647 0.77945 1.90811 1.13986 1.87119 1.60519 1.45461 1.10218 1.04653 1.77685 1.18360 0.91770 0.79794 0.93714 1.21566 0.93813 0.90967 1.53033 0.89941 1.26060 0.97368 1.02239 0.93814 1.70139 1.15190 1.21727 1.49903 0.85202 0.77973 0.76482 0.79515 1.18487 1.21110 1.18735 0.92057 0.86856 0.91586 0.91299 0.84892 0.80963 0.82037 0.84884 0.86930 0.76045 0.99721 1.00063 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.31 10.25 127.77 1.31 2.62 16 2 N -0.63 -17.52 2.86 -869.28 -2.48 -20.01 16 3 C 0.17 3.91 5.58 85.63 0.48 4.39 16 4 C -0.12 -2.81 5.46 -19.86 -0.11 -2.92 16 5 C -0.06 -1.08 9.70 22.26 0.22 -0.87 16 6 C -0.15 -2.83 10.03 22.31 0.22 -2.60 16 7 C 0.08 1.94 7.30 22.38 0.16 2.10 16 8 F -0.15 -3.76 17.27 44.97 0.78 -2.99 16 9 C -0.17 -4.61 10.03 22.31 0.22 -4.39 16 10 C -0.09 -2.50 9.70 22.26 0.22 -2.28 16 11 C 0.69 28.70 8.28 179.06 1.48 30.18 16 12 O -0.64 -32.59 15.45 -4.01 -0.06 -32.65 16 13 N -0.73 -31.83 5.41 -482.29 -2.61 -34.44 16 14 C 0.29 16.16 5.43 85.63 0.46 16.62 16 15 C -0.56 -30.58 9.28 25.60 0.24 -30.34 16 16 H 0.08 4.08 7.60 -2.91 -0.02 4.05 16 17 C 0.00 0.27 5.46 84.65 0.46 0.73 16 18 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 19 Si 0.99 42.36 29.54 68.60 2.03 44.39 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.11 1.06 7.89 -2.38 -0.02 1.04 16 25 H 0.07 1.26 6.36 -2.39 -0.02 1.25 16 26 H 0.07 1.93 7.36 -2.39 -0.02 1.91 16 27 H 0.13 1.68 7.83 -2.39 -0.02 1.66 16 28 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 30 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.11 3.88 7.58 -2.91 -0.02 3.86 16 32 H 0.40 14.69 6.05 -92.71 -0.56 14.13 16 33 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 34 H -0.02 -1.19 8.14 -2.39 -0.02 -1.20 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -76.02 309.19 3.84 -72.17 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.55 Total: 16.72 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 5.37 Total: 13.23 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -4.81 Total: -110.87 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.06 Total: -32.65 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.99 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -76.02 3.84 -72.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426422334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds