Wall clock time and date at job start Mon Mar 30 2020 04:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47042 * 2 1 4 4 C 1.36982 * 120.00588 * 272.59583 * 3 2 1 5 5 H 1.07995 * 120.00023 * 125.60993 * 4 3 2 6 6 C 1.38979 * 119.99470 * 305.61212 * 4 3 2 7 7 N 1.31408 * 119.99451 * 177.01709 * 6 4 3 8 8 Si 1.86800 * 120.00186 * 357.01275 * 6 4 3 9 9 H 1.48505 * 109.46983 * 92.62247 * 8 6 4 10 10 H 1.48495 * 109.46865 * 212.62043 * 8 6 4 11 11 H 1.48498 * 109.47396 * 332.62163 * 8 6 4 12 12 C 1.34785 * 119.99938 * 92.59706 * 3 2 1 13 13 O 1.21633 * 119.99454 * 354.92600 * 12 3 2 14 14 C 1.47317 * 120.00258 * 174.93119 * 12 3 2 15 15 C 1.38320 * 126.45909 * 352.10613 * 14 12 3 16 16 N 1.34257 * 108.39701 * 180.02562 * 15 14 12 17 17 H 0.97001 * 125.39202 * 179.97438 * 16 15 14 18 18 C 1.37833 * 109.21371 * 0.02562 * 16 15 14 19 19 C 1.46635 * 125.84775 * 180.02562 * 18 16 15 20 20 O 1.21605 * 120.00345 * 179.97438 * 19 18 16 21 21 O 1.34872 * 120.00160 * 359.96769 * 19 18 16 22 22 C 1.45203 * 117.00182 * 180.02562 * 21 19 18 23 23 C 1.36440 * 108.29999 * 359.72745 * 18 16 15 24 24 H 1.09004 * 109.46957 * 175.04934 * 1 2 3 25 25 H 1.08993 * 109.46990 * 295.04828 * 1 2 3 26 26 H 1.08998 * 109.47073 * 55.05004 * 1 2 3 27 27 H 1.08991 * 109.47408 * 120.00505 * 2 1 3 28 28 H 1.09003 * 109.46837 * 240.00205 * 2 1 3 29 29 H 0.97001 * 119.99850 * 179.97438 * 7 6 4 30 30 H 1.08001 * 125.79951 * 0.02667 * 15 14 12 31 31 H 1.08993 * 109.47314 * 60.00154 * 22 21 19 32 32 H 1.08999 * 109.47256 * 180.02562 * 22 21 19 33 33 H 1.09005 * 109.47209 * 300.00409 * 22 21 19 34 34 H 1.07999 * 126.49374 * 180.28791 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1960 2.0449 -1.1850 5 1 1.7187 3.0003 -1.3457 6 6 2.9905 1.4888 -2.1805 7 7 3.1138 2.0969 -3.3389 8 14 3.8830 -0.1228 -1.8719 9 1 3.0392 -1.2529 -2.3370 10 1 5.1688 -0.1267 -2.6147 11 1 4.1505 -0.2702 -0.4186 12 6 2.2928 1.9989 1.1661 13 8 2.0484 1.4439 2.2205 14 6 2.8887 3.3462 1.1635 15 6 3.3591 4.0348 0.0600 16 7 3.8243 5.2255 0.4703 17 1 4.2115 5.9053 -0.1032 18 6 3.6655 5.3286 1.8356 19 6 4.0499 6.4784 2.6604 20 8 3.8597 6.4560 3.8613 21 8 4.6145 7.5609 2.0873 22 6 4.9700 8.6616 2.9650 23 6 3.0832 4.1803 2.2870 24 1 -0.3633 -1.0239 -0.0887 25 1 -0.3633 0.4351 0.9310 26 1 -0.3633 0.5887 -0.8423 27 1 1.8934 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8900 29 1 3.6686 1.7090 -4.0336 30 1 3.3531 3.6757 -0.9585 31 1 5.6879 8.3161 3.7087 32 1 5.4132 9.4660 2.3779 33 1 4.0752 9.0294 3.4673 34 1 2.8223 3.9515 3.3098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432876542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:11 Heat of formation + Delta-G solvation = -65.178142 kcal Electronic energy + Delta-G solvation = -20185.905260 eV Core-core repulsion = 16892.427717 eV Total energy + Delta-G solvation = -3293.477543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07340 -39.73143 -38.34268 -36.30246 -35.07311 -32.36319 -31.09240 -30.16618 -29.20935 -27.37070 -25.05723 -23.61017 -22.51255 -21.22985 -19.83190 -19.18686 -18.47148 -16.96430 -16.58209 -16.32862 -15.84131 -15.48391 -14.70525 -14.30527 -13.86169 -13.69059 -13.33787 -13.24828 -12.93621 -12.90634 -12.58769 -12.21771 -12.12402 -11.89801 -11.68794 -11.28593 -11.08561 -10.83601 -10.76747 -10.56766 -10.12006 -9.87066 -9.19310 -8.75119 -8.59115 -7.83523 -7.62813 -6.58074 -4.40327 1.57203 2.63582 2.72813 3.02578 3.17328 3.25587 3.34169 3.53182 4.04161 4.44563 4.48404 4.83692 5.01272 5.05559 5.09285 5.42068 5.68414 5.79124 5.86335 6.02904 6.09772 6.16455 6.29802 6.41204 6.54056 6.60415 6.71603 6.91475 7.08292 7.26592 7.42248 7.80113 7.90127 8.01855 8.12663 8.86371 9.29975 9.69258 10.47516 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.005726 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.522047 B = 4888.581374 C = 5566.398308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.102 3.898 3 N -0.474 5.474 4 C -0.342 4.342 5 H 0.104 0.896 6 C 0.067 3.933 7 N -0.869 5.869 8 Si 0.885 3.115 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.258 1.258 12 C 0.565 3.435 13 O -0.594 6.594 14 C -0.219 4.219 15 C 0.114 3.886 16 N -0.532 5.532 17 H 0.421 0.579 18 C -0.086 4.086 19 C 0.539 3.461 20 O -0.509 6.509 21 O -0.367 6.367 22 C 0.040 3.960 23 C -0.036 4.036 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.278 0.722 30 H 0.228 0.772 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 7.393 3.024 8.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.021 4.021 3 N -0.196 5.196 4 C -0.470 4.470 5 H 0.121 0.879 6 C -0.141 4.141 7 N -0.504 5.504 8 Si 0.713 3.287 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.182 1.182 12 C 0.356 3.644 13 O -0.479 6.479 14 C -0.227 4.227 15 C -0.028 4.028 16 N -0.126 5.126 17 H 0.258 0.742 18 C -0.193 4.193 19 C 0.386 3.614 20 O -0.398 6.398 21 O -0.284 6.284 22 C -0.054 4.054 23 C -0.063 4.063 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.243 0.757 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.070 7.288 3.685 8.725 hybrid contribution 0.644 -0.354 -0.329 0.805 sum 3.713 6.934 3.356 8.552 Atomic orbital electron populations 1.22006 0.96604 1.00616 1.02256 1.21516 0.94382 0.85641 1.00540 1.43475 1.58825 1.11696 1.05569 1.19042 1.30099 1.06836 0.91034 0.87865 1.25594 0.95234 0.98204 0.95034 1.69646 1.37526 1.39339 1.03930 0.86698 0.79067 0.83155 0.79781 1.19872 1.21525 1.18244 1.17603 0.78564 0.84724 0.83472 1.90627 1.57832 1.67713 1.31729 1.19622 1.13093 0.97473 0.92543 1.24854 0.92636 0.82678 1.02634 1.42096 1.47463 1.16457 1.06627 0.74160 1.18740 1.19729 0.97051 0.83786 1.19948 0.74214 0.81044 0.86157 1.90870 1.52890 1.81027 1.15025 1.86562 1.73208 1.26467 1.42208 1.23209 1.00923 0.86798 0.94485 1.21080 0.95831 0.90056 0.99358 0.93223 0.92782 0.91989 0.91387 0.92438 0.91207 0.75665 0.91917 0.88250 0.91907 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 10.23 37.16 0.38 -2.56 16 2 C 0.10 2.19 4.77 -4.04 -0.02 2.17 16 3 N -0.47 -11.04 1.97 -116.07 -0.23 -11.27 16 4 C -0.34 -8.05 6.44 -14.98 -0.10 -8.15 16 5 H 0.10 2.52 6.93 -52.49 -0.36 2.16 16 6 C 0.07 1.60 5.20 -17.46 -0.09 1.51 16 7 N -0.87 -21.40 13.96 55.50 0.77 -20.62 16 8 Si 0.89 19.46 24.84 -169.99 -4.22 15.24 16 9 H -0.27 -5.84 6.94 56.52 0.39 -5.45 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.26 -5.89 6.91 56.52 0.39 -5.50 16 12 C 0.57 13.54 7.62 -12.56 -0.10 13.44 16 13 O -0.59 -15.41 16.52 5.25 0.09 -15.33 16 14 C -0.22 -4.67 6.01 -105.02 -0.63 -5.30 16 15 C 0.11 2.13 10.21 -16.46 -0.17 1.97 16 16 N -0.53 -8.36 6.01 -9.30 -0.06 -8.42 16 17 H 0.42 5.18 8.96 -40.82 -0.37 4.81 16 18 C -0.09 -1.50 7.02 -82.43 -0.58 -2.08 16 19 C 0.54 8.85 7.93 34.12 0.27 9.13 16 20 O -0.51 -9.41 16.65 -19.35 -0.32 -9.73 16 21 O -0.37 -4.93 10.58 -40.96 -0.43 -5.36 16 22 C 0.04 0.38 10.57 101.05 1.07 1.45 16 23 C -0.04 -0.72 10.38 -39.08 -0.41 -1.12 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.47 7.42 -51.93 -0.39 1.08 16 28 H 0.06 1.23 4.00 -51.93 -0.21 1.02 16 29 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 30 H 0.23 4.51 4.90 -52.49 -0.26 4.25 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.15 2.96 8.06 -52.49 -0.42 2.54 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -29.11 295.29 -4.01 -33.12 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.69 Total: 7.47 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.37 Total: 10.46 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.49 Total: -40.31 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.67 Total: -30.42 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.22 Total: 15.24 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.11 -4.01 -33.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432876542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.058 kcal (2) G-P(sol) polarization free energy of solvation -29.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds