Wall clock time and date at job start Mon Mar 30 2020 04:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47042 * 2 1 4 4 C 1.36982 * 120.00588 * 272.59583 * 3 2 1 5 5 H 1.07995 * 120.00023 * 125.60993 * 4 3 2 6 6 C 1.38979 * 119.99470 * 305.61212 * 4 3 2 7 7 N 1.31408 * 119.99451 * 177.01709 * 6 4 3 8 8 Si 1.86800 * 120.00186 * 357.01275 * 6 4 3 9 9 H 1.48505 * 109.46983 * 92.62247 * 8 6 4 10 10 H 1.48495 * 109.46865 * 212.62043 * 8 6 4 11 11 H 1.48498 * 109.47396 * 332.62163 * 8 6 4 12 12 C 1.34785 * 119.99938 * 92.59706 * 3 2 1 13 13 O 1.21633 * 119.99454 * 354.92600 * 12 3 2 14 14 C 1.47317 * 120.00258 * 174.93119 * 12 3 2 15 15 C 1.38320 * 126.45909 * 352.10613 * 14 12 3 16 16 N 1.34257 * 108.39701 * 180.02562 * 15 14 12 17 17 H 0.97001 * 125.39202 * 179.97438 * 16 15 14 18 18 C 1.37833 * 109.21371 * 0.02562 * 16 15 14 19 19 C 1.46635 * 125.84775 * 180.02562 * 18 16 15 20 20 O 1.21605 * 120.00345 * 179.97438 * 19 18 16 21 21 O 1.34872 * 120.00160 * 359.96769 * 19 18 16 22 22 C 1.45203 * 117.00182 * 180.02562 * 21 19 18 23 23 C 1.36440 * 108.29999 * 359.72745 * 18 16 15 24 24 H 1.09004 * 109.46957 * 175.04934 * 1 2 3 25 25 H 1.08993 * 109.46990 * 295.04828 * 1 2 3 26 26 H 1.08998 * 109.47073 * 55.05004 * 1 2 3 27 27 H 1.08991 * 109.47408 * 120.00505 * 2 1 3 28 28 H 1.09003 * 109.46837 * 240.00205 * 2 1 3 29 29 H 0.97001 * 119.99850 * 179.97438 * 7 6 4 30 30 H 1.08001 * 125.79951 * 0.02667 * 15 14 12 31 31 H 1.08993 * 109.47314 * 60.00154 * 22 21 19 32 32 H 1.08999 * 109.47256 * 180.02562 * 22 21 19 33 33 H 1.09005 * 109.47209 * 300.00409 * 22 21 19 34 34 H 1.07999 * 126.49374 * 180.28791 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1960 2.0449 -1.1850 5 1 1.7187 3.0003 -1.3457 6 6 2.9905 1.4888 -2.1805 7 7 3.1138 2.0969 -3.3389 8 14 3.8830 -0.1228 -1.8719 9 1 3.0392 -1.2529 -2.3370 10 1 5.1688 -0.1267 -2.6147 11 1 4.1505 -0.2702 -0.4186 12 6 2.2928 1.9989 1.1661 13 8 2.0484 1.4439 2.2205 14 6 2.8887 3.3462 1.1635 15 6 3.3591 4.0348 0.0600 16 7 3.8243 5.2255 0.4703 17 1 4.2115 5.9053 -0.1032 18 6 3.6655 5.3286 1.8356 19 6 4.0499 6.4784 2.6604 20 8 3.8597 6.4560 3.8613 21 8 4.6145 7.5609 2.0873 22 6 4.9700 8.6616 2.9650 23 6 3.0832 4.1803 2.2870 24 1 -0.3633 -1.0239 -0.0887 25 1 -0.3633 0.4351 0.9310 26 1 -0.3633 0.5887 -0.8423 27 1 1.8934 -0.5139 0.8898 28 1 1.8933 -0.5138 -0.8900 29 1 3.6686 1.7090 -4.0336 30 1 3.3531 3.6757 -0.9585 31 1 5.6879 8.3161 3.7087 32 1 5.4132 9.4660 2.3779 33 1 4.0752 9.0294 3.4673 34 1 2.8223 3.9515 3.3098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432876542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:11 Heat of formation + Delta-G solvation = -83.801419 kcal Electronic energy + Delta-G solvation = -20186.712826 eV Core-core repulsion = 16892.427717 eV Total energy + Delta-G solvation = -3294.285109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.53415 -41.06048 -40.08742 -37.53068 -36.93046 -34.18358 -32.70377 -31.70226 -30.62833 -28.40249 -26.91460 -25.13799 -23.93679 -22.86502 -21.27148 -20.73330 -20.09377 -18.39840 -18.09391 -17.50707 -17.47667 -17.20401 -16.15034 -15.97841 -15.58127 -15.12006 -14.89877 -14.68907 -14.45183 -14.30720 -14.10631 -13.86165 -13.65134 -13.31681 -13.06339 -12.95906 -12.74131 -12.48754 -11.92724 -11.88328 -11.86306 -11.58124 -11.03621 -10.60752 -10.11365 -9.50947 -9.32487 -8.43902 -6.27651 0.17465 0.97443 1.27460 1.40204 1.48734 1.55351 1.93567 2.15772 2.23793 2.65567 2.77889 3.02078 3.85689 4.07912 4.16534 4.29866 4.34342 4.38822 4.45701 4.47600 4.57546 4.69322 4.82475 4.92424 5.07421 5.10276 5.19120 5.34105 5.49933 5.64784 5.75188 6.13304 6.28257 6.48546 6.62789 7.00253 7.44894 7.85661 8.63731 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025955 B = 0.005726 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.522047 B = 4888.581374 C = 5566.398308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.092 3.908 3 N -0.479 5.479 4 C -0.335 4.335 5 H 0.092 0.908 6 C 0.047 3.953 7 N -0.890 5.890 8 Si 0.921 3.079 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.554 3.446 13 O -0.624 6.624 14 C -0.248 4.248 15 C 0.125 3.875 16 N -0.506 5.506 17 H 0.440 0.560 18 C -0.069 4.069 19 C 0.547 3.453 20 O -0.531 6.531 21 O -0.361 6.361 22 C 0.030 3.970 23 C -0.057 4.057 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.282 0.718 30 H 0.220 0.780 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.064 0.936 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 8.412 2.476 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 N -0.200 5.200 4 C -0.463 4.463 5 H 0.109 0.891 6 C -0.160 4.160 7 N -0.526 5.526 8 Si 0.748 3.252 9 H -0.186 1.186 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.346 3.654 13 O -0.511 6.511 14 C -0.256 4.256 15 C -0.019 4.019 16 N -0.102 5.102 17 H 0.282 0.718 18 C -0.178 4.178 19 C 0.394 3.606 20 O -0.421 6.421 21 O -0.277 6.277 22 C -0.063 4.063 23 C -0.083 4.083 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.236 0.764 31 H 0.083 0.917 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.759 8.340 3.092 9.656 hybrid contribution 0.473 -0.532 -0.124 0.723 sum 4.232 7.808 2.967 9.364 Atomic orbital electron populations 1.21920 0.94515 1.02601 1.01472 1.21678 0.96222 0.84727 1.00368 1.43612 1.58715 1.12320 1.05327 1.18886 1.29888 1.06547 0.90944 0.89092 1.25865 0.95521 0.99722 0.94844 1.69676 1.38249 1.40247 1.04433 0.86148 0.78768 0.81698 0.78571 1.18597 1.21105 1.19950 1.18050 0.78382 0.85715 0.83222 1.90585 1.59247 1.68725 1.32581 1.19567 1.14836 0.97101 0.94095 1.24396 0.92651 0.83357 1.01474 1.41929 1.46064 1.15883 1.06306 0.71815 1.18763 1.18006 0.96785 0.84219 1.19698 0.73970 0.81461 0.85447 1.90868 1.53766 1.81557 1.15952 1.86548 1.72198 1.26296 1.42670 1.23633 1.01339 0.86206 0.95078 1.21052 0.97334 0.91048 0.98915 0.89886 0.93706 0.92508 0.91937 0.92122 0.90782 0.76426 0.91701 0.84393 0.91684 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 10.23 71.98 0.74 -4.65 16 2 C 0.09 3.93 4.77 86.38 0.41 4.35 16 3 N -0.48 -22.42 1.97 -639.36 -1.26 -23.68 16 4 C -0.33 -15.73 6.44 84.07 0.54 -15.19 16 5 H 0.09 4.48 6.93 -2.91 -0.02 4.46 16 6 C 0.05 2.19 5.20 84.93 0.44 2.63 16 7 N -0.89 -43.04 13.96 21.67 0.30 -42.73 16 8 Si 0.92 39.14 24.84 68.60 1.70 40.85 16 9 H -0.26 -10.52 6.94 99.48 0.69 -9.83 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -12.36 6.91 99.48 0.69 -11.67 16 12 C 0.55 27.04 7.62 86.63 0.66 27.70 16 13 O -0.62 -33.21 16.52 -4.13 -0.07 -33.28 16 14 C -0.25 -10.66 6.01 -20.12 -0.12 -10.78 16 15 C 0.13 4.63 10.21 84.34 0.86 5.49 16 16 N -0.51 -15.08 6.01 -183.32 -1.10 -16.18 16 17 H 0.44 9.68 8.96 -92.71 -0.83 8.85 16 18 C -0.07 -2.34 7.02 39.97 0.28 -2.05 16 19 C 0.55 16.99 7.93 70.01 0.56 17.55 16 20 O -0.53 -19.00 16.65 19.49 0.32 -18.68 16 21 O -0.36 -8.64 10.58 -57.85 -0.61 -9.25 16 22 C 0.03 0.49 10.57 113.37 1.20 1.69 16 23 C -0.06 -2.26 10.38 22.60 0.23 -2.02 16 24 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 2.71 7.42 -2.39 -0.02 2.69 16 28 H 0.06 2.52 4.00 -2.39 -0.01 2.51 16 29 H 0.28 12.89 8.31 -92.71 -0.77 12.12 16 30 H 0.22 8.64 4.90 -2.91 -0.01 8.62 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.14 5.81 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -61.75 295.29 5.37 -56.37 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.28 Total: 21.88 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 5.80 Total: 24.70 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.06 Total: -82.59 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -0.36 Total: -61.20 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.70 Total: 40.85 kcal Total: -61.75 5.37 -56.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432876542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.427 kcal (2) G-P(sol) polarization free energy of solvation -61.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds