Wall clock time and date at job start Mon Mar 30 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34871 * 116.99860 * 2 1 4 4 O 1.21598 * 120.00534 * 359.97438 * 3 2 1 5 5 C 1.46638 * 119.99510 * 179.97438 * 3 2 1 6 6 C 1.36445 * 125.85433 * 180.25011 * 5 3 2 7 7 C 1.41256 * 107.00250 * 180.13339 * 6 5 3 8 8 C 1.47403 * 126.45653 * 179.89656 * 7 6 5 9 9 O 1.21605 * 119.99714 * 8.01048 * 8 7 6 10 10 N 1.34773 * 120.00043 * 188.01498 * 8 7 6 11 11 C 1.46501 * 119.99966 * 6.49187 * 10 8 7 12 12 C 1.46502 * 120.00099 * 186.49830 * 10 8 7 13 13 C 1.50695 * 109.46711 * 269.99843 * 12 10 8 14 14 H 1.07998 * 120.00596 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99893 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99839 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47057 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47075 * 119.99666 * 17 15 13 20 20 H 1.48495 * 109.47352 * 240.00068 * 17 15 13 21 21 C 1.38242 * 107.08855 * 359.63405 * 7 6 5 22 22 N 1.34230 * 108.41751 * 0.22556 * 21 7 6 23 23 H 0.97006 * 125.39931 * 179.97438 * 22 21 7 24 24 H 1.09000 * 109.47134 * 300.00020 * 1 2 3 25 25 H 1.08994 * 109.46903 * 59.99805 * 1 2 3 26 26 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.08002 * 126.50522 * 359.97438 * 6 5 3 28 28 H 1.09002 * 109.47434 * 275.87330 * 11 10 8 29 29 H 1.09000 * 109.47163 * 35.87745 * 11 10 8 30 30 H 1.08997 * 109.47086 * 155.87500 * 11 10 8 31 31 H 1.08989 * 109.47219 * 149.99416 * 12 10 8 32 32 H 1.09005 * 109.47081 * 29.99326 * 12 10 8 33 33 H 0.97004 * 119.99822 * 179.97438 * 16 15 13 34 34 H 1.08004 * 125.79077 * 180.26305 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4021 2.2216 -0.0005 5 6 3.5287 1.2784 0.0006 6 6 4.2690 2.4245 0.0055 7 6 5.6278 2.0386 0.0009 8 6 6.7943 2.9398 0.0016 9 8 6.6381 4.1362 0.1531 10 7 8.0337 2.4378 -0.1658 11 6 8.2123 1.0203 -0.4898 12 6 9.2025 3.3096 -0.0237 13 6 9.5413 3.9174 -1.3603 14 1 8.9458 3.6780 -2.2290 15 6 10.6115 4.7793 -1.4744 16 7 11.3362 5.0713 -0.4166 17 14 11.0318 5.5322 -3.1315 18 1 10.0699 5.0474 -4.1538 19 1 10.9499 7.0120 -3.0379 20 1 12.4092 5.1362 -3.5200 21 6 5.6576 0.6565 0.0018 22 7 4.3934 0.2051 0.0016 23 1 4.1302 -0.7285 0.0017 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.8883 3.4352 0.0092 28 1 8.1970 0.4329 0.4283 29 1 7.4046 0.6926 -1.1443 30 1 9.1683 0.8806 -0.9945 31 1 10.0499 2.7256 0.3352 32 1 8.9796 4.1027 0.6901 33 1 12.0894 5.6773 -0.4970 34 1 6.5471 0.0439 0.0032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432888774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:46 Heat of formation + Delta-G solvation = -56.034744 kcal Electronic energy + Delta-G solvation = -19533.782742 eV Core-core repulsion = 16240.701687 eV Total energy + Delta-G solvation = -3293.081055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66000 -40.11057 -38.35784 -36.63198 -34.83716 -32.67922 -31.32511 -30.29749 -28.28507 -27.25972 -26.12737 -23.81021 -22.97294 -21.37370 -20.31748 -19.61906 -17.75528 -17.29788 -16.65631 -16.47329 -16.32526 -15.25472 -15.00775 -14.80955 -14.15512 -13.93704 -13.88568 -13.56612 -13.25358 -12.70974 -12.49451 -12.45984 -12.33005 -12.12403 -11.40886 -11.13887 -11.11050 -10.88351 -10.81853 -10.54257 -10.10925 -9.58381 -9.10212 -8.99059 -8.43932 -8.39768 -7.60860 -6.00264 -4.04297 1.10018 2.05079 2.37064 2.92255 2.93027 3.33352 3.41338 3.45795 3.98747 4.17511 4.49582 4.64321 4.79086 4.84504 4.87953 5.07145 5.16855 5.27380 5.34616 5.52327 5.76243 5.77324 5.94309 6.03502 6.14365 6.45064 6.65050 7.09816 7.15455 7.47649 7.52739 7.58929 7.96869 8.27710 8.46304 8.96270 9.17906 9.60782 11.07852 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039187 B = 0.003816 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.348989 B = 7335.142836 C = 7586.248837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.367 6.367 3 C 0.538 3.462 4 O -0.497 6.497 5 C -0.063 4.063 6 C -0.031 4.031 7 C -0.217 4.217 8 C 0.573 3.427 9 O -0.536 6.536 10 N -0.599 5.599 11 C 0.071 3.929 12 C 0.247 3.753 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.062 3.938 22 N -0.522 5.522 23 H 0.424 0.576 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.160 0.840 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.262 0.738 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.723 -16.771 1.220 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.285 6.285 3 C 0.383 3.617 4 O -0.385 6.385 5 C -0.171 4.171 6 C -0.057 4.057 7 C -0.227 4.227 8 C 0.361 3.639 9 O -0.414 6.414 10 N -0.331 5.331 11 C -0.073 4.073 12 C 0.128 3.872 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.536 5.536 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.211 1.211 21 C -0.079 4.079 22 N -0.117 5.117 23 H 0.263 0.737 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.178 0.822 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -15.978 -15.850 1.361 22.547 hybrid contribution 0.041 -0.047 -0.935 0.937 sum -15.937 -15.897 0.426 22.514 Atomic orbital electron populations 1.23266 0.75642 1.03675 1.02873 1.86534 1.23972 1.32910 1.85042 1.19838 0.86972 0.81689 0.73170 1.90919 1.65366 1.35764 1.46415 1.18854 0.86512 0.88216 1.23534 1.21183 0.90945 0.97540 0.96053 1.20084 0.94576 0.92440 1.15566 1.17264 0.81901 0.86979 0.77791 1.90766 1.85093 1.15187 1.50309 1.47972 1.07162 1.09559 1.68380 1.22089 1.03052 0.83168 0.98953 1.19313 0.80756 0.89351 0.97791 1.21494 1.12715 1.27103 0.94896 0.92313 1.24939 0.96132 0.96210 0.96917 1.69940 1.18992 1.35917 1.28704 0.86442 0.77889 0.79205 0.83884 1.19789 1.20883 1.21057 1.23796 0.87407 0.95667 1.01074 1.41785 1.05795 1.08870 1.55255 0.73723 0.91679 0.91681 0.88031 0.82212 0.93543 0.91718 0.90337 0.94862 0.93833 0.92816 0.78107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.37 -3.66 10.58 -40.96 -0.43 -4.10 16 3 C 0.54 6.98 7.93 34.12 0.27 7.25 16 4 O -0.50 -7.82 16.65 -19.34 -0.32 -8.14 16 5 C -0.06 -0.83 7.02 -82.43 -0.58 -1.41 16 6 C -0.03 -0.50 10.38 -39.08 -0.41 -0.91 16 7 C -0.22 -3.61 5.94 -105.02 -0.62 -4.23 16 8 C 0.57 12.51 7.65 -12.53 -0.10 12.41 16 9 O -0.54 -14.27 16.58 5.27 0.09 -14.18 16 10 N -0.60 -12.65 2.86 -184.25 -0.53 -13.17 16 11 C 0.07 1.03 8.65 59.85 0.52 1.55 16 12 C 0.25 6.45 5.09 -5.20 -0.03 6.42 16 13 C -0.52 -14.95 9.39 -34.44 -0.32 -15.28 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 17 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.06 0.70 9.83 -16.50 -0.16 0.54 16 22 N -0.52 -5.11 6.01 -9.32 -0.06 -5.17 16 23 H 0.42 2.57 8.96 -40.82 -0.37 2.20 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.16 2.70 8.06 -52.49 -0.42 2.28 16 28 H 0.05 0.52 7.26 -51.93 -0.38 0.14 16 29 H 0.06 0.77 5.47 -51.93 -0.28 0.49 16 30 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 31 H 0.03 0.86 8.07 -51.94 -0.42 0.44 16 32 H 0.04 1.29 7.52 -51.93 -0.39 0.90 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.20 1.65 4.44 -52.48 -0.23 1.42 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -36.90 303.07 -5.15 -42.04 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -3.72 Total: -2.24 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -0.46 Total: 9.32 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.15 Total: -44.35 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.67 Total: -26.41 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.90 -5.15 -42.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432888774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.991 kcal (2) G-P(sol) polarization free energy of solvation -36.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds