Wall clock time and date at job start Mon Mar 30 2020 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34871 * 116.99860 * 2 1 4 4 O 1.21598 * 120.00534 * 359.97438 * 3 2 1 5 5 C 1.46638 * 119.99510 * 179.97438 * 3 2 1 6 6 C 1.36445 * 125.85433 * 180.25011 * 5 3 2 7 7 C 1.41256 * 107.00250 * 180.13339 * 6 5 3 8 8 C 1.47403 * 126.45653 * 179.89656 * 7 6 5 9 9 O 1.21605 * 119.99714 * 8.01048 * 8 7 6 10 10 N 1.34773 * 120.00043 * 188.01498 * 8 7 6 11 11 C 1.46501 * 119.99966 * 6.49187 * 10 8 7 12 12 C 1.46502 * 120.00099 * 186.49830 * 10 8 7 13 13 C 1.50695 * 109.46711 * 269.99843 * 12 10 8 14 14 H 1.07998 * 120.00596 * 359.97438 * 13 12 10 15 15 C 1.37885 * 119.99893 * 179.97438 * 13 12 10 16 16 N 1.31509 * 119.99839 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47057 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47075 * 119.99666 * 17 15 13 20 20 H 1.48495 * 109.47352 * 240.00068 * 17 15 13 21 21 C 1.38242 * 107.08855 * 359.63405 * 7 6 5 22 22 N 1.34230 * 108.41751 * 0.22556 * 21 7 6 23 23 H 0.97006 * 125.39931 * 179.97438 * 22 21 7 24 24 H 1.09000 * 109.47134 * 300.00020 * 1 2 3 25 25 H 1.08994 * 109.46903 * 59.99805 * 1 2 3 26 26 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.08002 * 126.50522 * 359.97438 * 6 5 3 28 28 H 1.09002 * 109.47434 * 275.87330 * 11 10 8 29 29 H 1.09000 * 109.47163 * 35.87745 * 11 10 8 30 30 H 1.08997 * 109.47086 * 155.87500 * 11 10 8 31 31 H 1.08989 * 109.47219 * 149.99416 * 12 10 8 32 32 H 1.09005 * 109.47081 * 29.99326 * 12 10 8 33 33 H 0.97004 * 119.99822 * 179.97438 * 16 15 13 34 34 H 1.08004 * 125.79077 * 180.26305 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4021 2.2216 -0.0005 5 6 3.5287 1.2784 0.0006 6 6 4.2690 2.4245 0.0055 7 6 5.6278 2.0386 0.0009 8 6 6.7943 2.9398 0.0016 9 8 6.6381 4.1362 0.1531 10 7 8.0337 2.4378 -0.1658 11 6 8.2123 1.0203 -0.4898 12 6 9.2025 3.3096 -0.0237 13 6 9.5413 3.9174 -1.3603 14 1 8.9458 3.6780 -2.2290 15 6 10.6115 4.7793 -1.4744 16 7 11.3362 5.0713 -0.4166 17 14 11.0318 5.5322 -3.1315 18 1 10.0699 5.0474 -4.1538 19 1 10.9499 7.0120 -3.0379 20 1 12.4092 5.1362 -3.5200 21 6 5.6576 0.6565 0.0018 22 7 4.3934 0.2051 0.0016 23 1 4.1302 -0.7285 0.0017 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.8883 3.4352 0.0092 28 1 8.1970 0.4329 0.4283 29 1 7.4046 0.6926 -1.1443 30 1 9.1683 0.8806 -0.9945 31 1 10.0499 2.7256 0.3352 32 1 8.9796 4.1027 0.6901 33 1 12.0894 5.6773 -0.4970 34 1 6.5471 0.0439 0.0032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432888774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:45 Heat of formation + Delta-G solvation = -83.722360 kcal Electronic energy + Delta-G solvation = -19534.983367 eV Core-core repulsion = 16240.701687 eV Total energy + Delta-G solvation = -3294.281681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.74691 -41.12269 -39.96826 -37.58427 -36.59613 -34.76226 -32.54291 -31.48647 -29.70501 -28.34514 -27.62424 -25.50116 -24.17112 -22.81631 -21.40319 -20.74289 -19.15401 -18.64745 -18.25947 -17.55000 -17.52241 -16.92764 -16.43878 -16.16949 -15.91455 -15.20493 -14.84666 -14.68603 -14.31200 -14.20856 -14.07664 -13.85297 -13.66483 -13.26456 -13.10259 -12.90473 -12.63493 -12.37191 -12.12757 -11.90994 -11.88926 -11.65941 -10.76416 -10.61589 -10.26579 -9.55823 -9.34919 -8.19137 -6.33178 0.06610 0.79485 1.37621 1.41141 1.47231 1.52629 1.84437 1.99049 2.35085 2.53961 2.63566 3.10235 3.73089 3.79377 4.02598 4.11717 4.29454 4.33317 4.38800 4.59033 4.71306 4.72779 4.77863 4.97920 5.09245 5.14108 5.24348 5.34449 5.49232 5.61336 5.89940 6.10728 6.35634 6.56408 6.75134 6.84770 7.32366 7.55000 8.87731 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039187 B = 0.003816 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.348989 B = 7335.142836 C = 7586.248837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.543 3.457 4 O -0.532 6.532 5 C -0.054 4.054 6 C -0.059 4.059 7 C -0.256 4.256 8 C 0.564 3.436 9 O -0.607 6.607 10 N -0.604 5.604 11 C 0.059 3.941 12 C 0.260 3.740 13 C -0.540 4.540 14 H 0.051 0.949 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.112 3.888 22 N -0.489 5.489 23 H 0.450 0.550 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.141 0.859 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.034 0.966 32 H -0.006 1.006 33 H 0.267 0.733 34 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.369 -20.539 0.188 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.272 6.272 3 C 0.390 3.610 4 O -0.422 6.422 5 C -0.164 4.164 6 C -0.086 4.086 7 C -0.265 4.265 8 C 0.355 3.645 9 O -0.490 6.490 10 N -0.334 5.334 11 C -0.083 4.083 12 C 0.139 3.861 13 C -0.579 4.579 14 H 0.069 0.931 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.032 4.032 22 N -0.086 5.086 23 H 0.293 0.707 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.159 0.841 27 H 0.151 0.849 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.012 0.988 33 H 0.076 0.924 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -16.652 -19.740 0.321 25.828 hybrid contribution 0.147 1.020 -0.570 1.178 sum -16.506 -18.720 -0.248 24.959 Atomic orbital electron populations 1.23638 0.73675 1.06200 1.02754 1.86523 1.25741 1.30719 1.84197 1.19783 0.86799 0.82076 0.72378 1.90912 1.66070 1.37217 1.48023 1.18619 0.86994 0.88129 1.22625 1.21057 0.91693 0.97778 0.98023 1.19574 0.92434 0.94175 1.20345 1.18018 0.83194 0.86922 0.76349 1.90709 1.86210 1.18472 1.53597 1.47945 1.05577 1.11811 1.68108 1.22553 1.04256 0.79552 1.01907 1.18795 0.82572 0.89088 0.95648 1.21758 1.12805 1.27825 0.95504 0.93082 1.25837 0.96007 0.96536 1.00809 1.70048 1.19492 1.36489 1.30829 0.85387 0.78402 0.77888 0.79226 1.19331 1.21021 1.19106 1.24111 0.88866 0.93481 0.96778 1.41710 1.04645 1.09475 1.52742 0.70667 0.91861 0.91898 0.84126 0.84883 0.88955 0.88423 0.90705 0.94797 0.98758 0.92428 0.73878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.00 10.58 -57.84 -0.61 -6.61 16 3 C 0.54 13.28 7.93 70.01 0.56 13.84 16 4 O -0.53 -16.76 16.65 19.51 0.32 -16.44 16 5 C -0.05 -1.34 7.02 39.98 0.28 -1.05 16 6 C -0.06 -1.95 10.38 22.59 0.23 -1.72 16 7 C -0.26 -8.36 5.94 -20.12 -0.12 -8.48 16 8 C 0.56 25.51 7.65 86.66 0.66 26.17 16 9 O -0.61 -34.84 16.58 -4.05 -0.07 -34.91 16 10 N -0.60 -25.68 2.86 -855.09 -2.44 -28.12 16 11 C 0.06 1.51 8.65 127.77 1.11 2.61 16 12 C 0.26 14.15 5.09 85.63 0.44 14.59 16 13 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 14 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 15 C 0.01 0.40 5.46 84.66 0.46 0.86 16 16 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 17 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C 0.11 2.07 9.83 84.33 0.83 2.90 16 22 N -0.49 -7.43 6.01 -183.39 -1.10 -8.53 16 23 H 0.45 2.77 8.96 -92.70 -0.83 1.94 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 28 H 0.09 1.58 7.26 -2.39 -0.02 1.56 16 29 H 0.10 1.86 5.47 -2.39 -0.01 1.85 16 30 H 0.07 2.03 8.03 -2.39 -0.02 2.01 16 31 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 32 H -0.01 -0.36 7.52 -2.38 -0.02 -0.38 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.25 2.37 4.44 -2.91 -0.01 2.36 16 Total: -1.00 -88.14 303.07 4.61 -83.53 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: 0.32 Total: -0.06 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 5.88 Total: 19.76 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -3.26 Total: -93.08 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -0.35 Total: -57.96 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -88.14 4.61 -83.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432888774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.196 kcal (2) G-P(sol) polarization free energy of solvation -88.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds