Wall clock time and date at job start Mon Mar 30 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00432 * 2 1 4 4 C 1.50694 * 109.47510 * 180.02562 * 3 2 1 5 5 C 1.38201 * 120.40492 * 0.02562 * 4 3 2 6 6 C 1.39505 * 118.33914 * 180.02562 * 5 4 3 7 7 N 1.39013 * 120.52600 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99903 * 174.91950 * 7 6 5 9 9 O 1.21564 * 120.00301 * 5.08921 * 8 7 6 10 10 N 1.34776 * 119.99491 * 185.08139 * 8 7 6 11 11 C 1.46503 * 119.99624 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46998 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00272 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00060 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99897 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00350 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46907 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47247 * 119.99281 * 16 14 12 19 19 H 1.48491 * 109.47196 * 239.99950 * 16 14 12 20 20 N 1.32926 * 118.95344 * 0.02562 * 6 5 4 21 21 C 1.31749 * 120.70363 * 0.02562 * 20 6 5 22 22 N 1.31794 * 121.82426 * 359.71296 * 21 20 6 23 23 H 1.09000 * 109.46990 * 299.99773 * 1 2 3 24 24 H 1.09005 * 109.47095 * 59.99320 * 1 2 3 25 25 H 1.08993 * 109.47635 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46838 * 60.00213 * 3 2 1 27 27 H 1.09003 * 109.47594 * 300.00599 * 3 2 1 28 28 H 1.08001 * 120.83609 * 359.97438 * 5 4 3 29 29 H 0.96999 * 119.99806 * 354.91381 * 7 6 5 30 30 H 0.96998 * 120.00589 * 0.02562 * 10 8 7 31 31 H 1.08999 * 109.47140 * 300.00085 * 11 10 8 32 32 H 1.08996 * 109.47159 * 59.99962 * 11 10 8 33 33 H 0.96999 * 119.99827 * 179.97438 * 15 14 12 34 34 H 1.07994 * 119.09081 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1156 -0.0571 -0.0016 6 6 5.5094 -0.1170 -0.0016 7 7 6.1634 -1.3437 -0.0021 8 6 7.5063 -1.3914 -0.1055 9 8 8.1530 -0.3620 -0.1051 10 7 8.1324 -2.5804 -0.2091 11 6 9.5922 -2.6323 -0.3209 12 6 10.0374 -4.0684 -0.4234 13 1 9.3062 -4.8630 -0.4065 14 6 11.3784 -4.3679 -0.5377 15 7 12.2689 -3.4003 -0.5577 16 14 11.9304 -6.1481 -0.6640 17 1 10.7431 -7.0389 -0.6175 18 1 12.6533 -6.3525 -1.9450 19 1 12.8334 -6.4680 0.4705 20 7 6.2023 1.0173 -0.0002 21 6 5.5862 2.1819 0.0018 22 7 4.2714 2.2726 -0.0033 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.5229 -0.9599 -0.0016 29 1 5.6531 -2.1654 0.0721 30 1 7.6165 -3.4019 -0.2096 31 1 9.9079 -2.0899 -1.2121 32 1 10.0406 -2.1746 0.5608 33 1 13.2124 -3.6111 -0.6378 34 1 6.1749 3.0873 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488939629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:33 Heat of formation + Delta-G solvation = -11.297099 kcal Electronic energy + Delta-G solvation = -19086.959989 eV Core-core repulsion = 15828.111654 eV Total energy + Delta-G solvation = -3258.848335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.16774 -39.29529 -38.17430 -35.34979 -34.11668 -33.37500 -32.37187 -31.03897 -28.43256 -27.16542 -26.26640 -24.07805 -23.45235 -22.01554 -20.39139 -18.66941 -17.98966 -17.09435 -16.38764 -16.21648 -16.04543 -15.53171 -15.32876 -15.05177 -14.74434 -14.46615 -14.29590 -13.89598 -13.14834 -13.04386 -12.66220 -12.15944 -12.01918 -11.81126 -11.21444 -10.95706 -10.88762 -10.68289 -10.34295 -10.32706 -9.80105 -9.72097 -9.39382 -8.77278 -8.76887 -8.64580 -7.87920 -6.17956 -4.25045 1.02594 1.19146 2.78515 3.05389 3.23013 3.30213 3.33155 3.64229 4.07765 4.21468 4.27691 4.35565 4.60227 4.79463 4.91572 4.92402 5.04735 5.09738 5.18382 5.21121 5.29665 5.44196 5.57594 6.11623 6.59642 6.69192 6.80522 7.16514 7.38400 7.46924 7.51544 7.75710 7.95826 8.29136 8.66575 8.82700 9.18842 9.42112 10.92243 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.036740 B = 0.003333 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.926804 B = 8399.993648 C = 9130.776279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.116 3.884 4 C 0.186 3.814 5 C -0.250 4.250 6 C 0.433 3.567 7 N -0.666 5.666 8 C 0.678 3.322 9 O -0.532 6.532 10 N -0.722 5.722 11 C 0.266 3.734 12 C -0.543 4.543 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.508 5.508 21 C 0.329 3.671 22 N -0.554 5.554 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.413 0.587 30 H 0.388 0.612 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.973 5.938 1.277 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C 0.039 3.961 4 C 0.042 3.958 5 C -0.277 4.277 6 C 0.191 3.809 7 N -0.315 5.315 8 C 0.377 3.623 9 O -0.404 6.404 10 N -0.375 5.375 11 C 0.146 3.854 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.228 5.228 21 C 0.040 3.960 22 N -0.273 5.273 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.249 0.751 30 H 0.220 0.780 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -21.334 7.438 1.233 22.627 hybrid contribution -0.721 -2.310 -0.040 2.420 sum -22.054 5.128 1.193 22.674 Atomic orbital electron populations 1.22775 0.80016 1.03205 1.00291 1.87823 1.20299 1.26914 1.95596 1.20940 0.87662 0.85156 1.02347 1.20816 0.95344 0.88431 0.91182 1.21910 0.93280 1.01162 1.11304 1.18471 0.87809 0.86405 0.88264 1.43042 1.07772 1.06225 1.74440 1.16296 0.80342 0.85971 0.79736 1.91017 1.63142 1.32290 1.53903 1.45826 1.10874 1.04798 1.75986 1.19071 0.71300 0.97319 0.97749 1.21235 0.92647 0.91462 1.52827 0.91809 1.24951 0.96342 0.97999 0.94730 1.69989 1.01789 1.31783 1.48575 0.86340 0.78739 0.83893 0.77795 1.19645 1.20782 1.20787 1.68550 1.39928 0.97476 1.16893 1.24904 0.86889 0.95244 0.88986 1.67977 1.07810 1.32467 1.19080 0.93735 0.93734 0.89182 0.90398 0.90404 0.82981 0.75062 0.78001 0.95434 0.95422 0.92438 0.78387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.43 9.26 -35.23 -0.33 -3.76 16 3 C 0.12 1.03 6.50 36.00 0.23 1.26 16 4 C 0.19 2.30 6.82 -82.32 -0.56 1.74 16 5 C -0.25 -3.22 9.35 -39.12 -0.37 -3.58 16 6 C 0.43 6.97 7.45 -154.42 -1.15 5.82 16 7 N -0.67 -10.52 5.39 -15.67 -0.08 -10.61 16 8 C 0.68 14.18 8.52 -86.92 -0.74 13.44 16 9 O -0.53 -13.50 14.65 5.31 0.08 -13.43 16 10 N -0.72 -15.18 5.55 -66.42 -0.37 -15.55 16 11 C 0.27 7.06 5.43 -5.19 -0.03 7.03 16 12 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.88 -26.01 13.29 55.43 0.74 -25.28 16 16 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 N -0.51 -9.19 8.05 -13.74 -0.11 -9.30 16 21 C 0.33 4.81 12.28 -92.19 -1.13 3.68 16 22 N -0.55 -7.46 10.37 -10.87 -0.11 -7.57 16 23 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.15 1.63 7.11 -52.49 -0.37 1.26 16 29 H 0.41 4.71 8.74 -40.82 -0.36 4.35 16 30 H 0.39 6.78 8.34 -40.82 -0.34 6.44 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -35.10 304.65 -7.65 -42.75 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.99 Total: 5.04 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: -3.05 Total: 17.40 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: 0.06 Total: -68.31 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.25 Total: -17.18 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.10 -7.65 -42.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488939629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.453 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds