Wall clock time and date at job start Mon Mar 30 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00432 * 2 1 4 4 C 1.50694 * 109.47510 * 180.02562 * 3 2 1 5 5 C 1.38201 * 120.40492 * 0.02562 * 4 3 2 6 6 C 1.39505 * 118.33914 * 180.02562 * 5 4 3 7 7 N 1.39013 * 120.52600 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99903 * 174.91950 * 7 6 5 9 9 O 1.21564 * 120.00301 * 5.08921 * 8 7 6 10 10 N 1.34776 * 119.99491 * 185.08139 * 8 7 6 11 11 C 1.46503 * 119.99624 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.46998 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00272 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00060 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99897 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00350 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46907 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47247 * 119.99281 * 16 14 12 19 19 H 1.48491 * 109.47196 * 239.99950 * 16 14 12 20 20 N 1.32926 * 118.95344 * 0.02562 * 6 5 4 21 21 C 1.31749 * 120.70363 * 0.02562 * 20 6 5 22 22 N 1.31794 * 121.82426 * 359.71296 * 21 20 6 23 23 H 1.09000 * 109.46990 * 299.99773 * 1 2 3 24 24 H 1.09005 * 109.47095 * 59.99320 * 1 2 3 25 25 H 1.08993 * 109.47635 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46838 * 60.00213 * 3 2 1 27 27 H 1.09003 * 109.47594 * 300.00599 * 3 2 1 28 28 H 1.08001 * 120.83609 * 359.97438 * 5 4 3 29 29 H 0.96999 * 119.99806 * 354.91381 * 7 6 5 30 30 H 0.96998 * 120.00589 * 0.02562 * 10 8 7 31 31 H 1.08999 * 109.47140 * 300.00085 * 11 10 8 32 32 H 1.08996 * 109.47159 * 59.99962 * 11 10 8 33 33 H 0.96999 * 119.99827 * 179.97438 * 15 14 12 34 34 H 1.07994 * 119.09081 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1156 -0.0571 -0.0016 6 6 5.5094 -0.1170 -0.0016 7 7 6.1634 -1.3437 -0.0021 8 6 7.5063 -1.3914 -0.1055 9 8 8.1530 -0.3620 -0.1051 10 7 8.1324 -2.5804 -0.2091 11 6 9.5922 -2.6323 -0.3209 12 6 10.0374 -4.0684 -0.4234 13 1 9.3062 -4.8630 -0.4065 14 6 11.3784 -4.3679 -0.5377 15 7 12.2689 -3.4003 -0.5577 16 14 11.9304 -6.1481 -0.6640 17 1 10.7431 -7.0389 -0.6175 18 1 12.6533 -6.3525 -1.9450 19 1 12.8334 -6.4680 0.4705 20 7 6.2023 1.0173 -0.0002 21 6 5.5862 2.1819 0.0018 22 7 4.2714 2.2726 -0.0033 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.5229 -0.9599 -0.0016 29 1 5.6531 -2.1654 0.0721 30 1 7.6165 -3.4019 -0.2096 31 1 9.9079 -2.0899 -1.2121 32 1 10.0406 -2.1746 0.5608 33 1 13.2124 -3.6111 -0.6378 34 1 6.1749 3.0873 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488939629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:32 Heat of formation + Delta-G solvation = -37.717252 kcal Electronic energy + Delta-G solvation = -19088.105653 eV Core-core repulsion = 15828.111654 eV Total energy + Delta-G solvation = -3259.993998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35468 -40.81992 -38.83116 -36.81101 -35.99780 -34.63160 -34.19606 -32.27723 -29.48079 -28.87825 -26.86988 -25.40285 -24.90862 -23.54233 -21.92627 -20.25579 -19.22672 -18.40847 -17.70448 -17.11564 -17.10011 -16.79153 -16.69676 -16.50516 -15.97495 -15.67798 -15.57200 -15.29135 -14.91294 -14.20980 -14.06198 -13.58312 -13.39563 -12.87344 -12.78548 -12.49632 -12.33088 -12.21570 -11.77064 -11.45617 -11.43450 -11.19510 -10.81932 -10.54810 -10.06628 -10.06401 -9.65171 -8.28655 -6.45210 -0.06471 0.06282 1.37181 1.45944 1.46628 1.59842 2.10097 2.35591 2.38389 2.84732 3.01637 3.06862 3.34225 3.53651 3.71357 4.08588 4.21664 4.40230 4.45570 4.58689 4.66388 4.67044 4.96757 4.98083 5.03691 5.24945 5.42741 5.49981 5.56479 5.74725 5.84402 6.11864 6.23192 6.65678 6.99392 7.23119 7.29054 7.57973 8.83889 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.036740 B = 0.003333 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.926804 B = 8399.993648 C = 9130.776279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.121 3.879 4 C 0.183 3.817 5 C -0.234 4.234 6 C 0.406 3.594 7 N -0.648 5.648 8 C 0.681 3.319 9 O -0.582 6.582 10 N -0.713 5.713 11 C 0.285 3.715 12 C -0.554 4.554 13 H 0.087 0.913 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.987 3.013 17 H -0.252 1.252 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.558 5.558 21 C 0.321 3.679 22 N -0.549 5.549 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.435 0.565 30 H 0.408 0.592 31 H -0.012 1.012 32 H -0.011 1.011 33 H 0.269 0.731 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.730 4.413 1.294 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.326 6.326 3 C 0.044 3.956 4 C 0.038 3.962 5 C -0.260 4.260 6 C 0.166 3.834 7 N -0.299 5.299 8 C 0.380 3.620 9 O -0.457 6.457 10 N -0.368 5.368 11 C 0.162 3.838 12 C -0.592 4.592 13 H 0.105 0.895 14 C -0.196 4.196 15 N -0.569 5.569 16 Si 0.810 3.190 17 H -0.175 1.175 18 H -0.205 1.205 19 H -0.205 1.205 20 N -0.279 5.279 21 C 0.033 3.967 22 N -0.268 5.268 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.195 0.805 29 H 0.275 0.725 30 H 0.244 0.756 31 H 0.006 0.994 32 H 0.007 0.993 33 H 0.078 0.922 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -24.207 5.891 1.257 24.946 hybrid contribution -0.022 -1.712 -0.036 1.713 sum -24.229 4.179 1.221 24.617 Atomic orbital electron populations 1.22980 0.78179 1.04281 1.01386 1.87780 1.22229 1.26764 1.95812 1.20999 0.84993 0.85743 1.03856 1.21522 0.97281 0.87851 0.89510 1.22096 0.91628 1.02532 1.09708 1.18763 0.89013 0.85846 0.89791 1.42568 1.05759 1.07584 1.74001 1.16384 0.81795 0.84913 0.78859 1.90982 1.64978 1.33896 1.55862 1.45358 1.09070 1.06065 1.76267 1.18483 0.74152 0.96957 0.94163 1.21621 0.93451 0.91715 1.52384 0.89549 1.26072 0.96440 1.03172 0.93945 1.70153 1.02334 1.34732 1.49730 0.85080 0.78678 0.77646 0.77604 1.17492 1.20544 1.20534 1.68453 1.41984 0.98997 1.18494 1.25301 0.87649 0.95044 0.88755 1.68085 1.07260 1.32911 1.18548 0.92607 0.92670 0.88210 0.88692 0.88794 0.80528 0.72473 0.75630 0.99377 0.99310 0.92225 0.76488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.89 9.26 -148.98 -1.38 -7.27 16 3 C 0.12 1.76 6.50 71.23 0.46 2.22 16 4 C 0.18 4.12 6.82 42.45 0.29 4.41 16 5 C -0.23 -5.58 9.35 22.57 0.21 -5.37 16 6 C 0.41 12.93 7.45 132.99 0.99 13.93 16 7 N -0.65 -20.19 5.39 -321.76 -1.73 -21.93 16 8 C 0.68 29.19 8.52 179.05 1.53 30.71 16 9 O -0.58 -30.97 14.65 -3.92 -0.06 -31.02 16 10 N -0.71 -30.43 5.55 -482.32 -2.68 -33.11 16 11 C 0.29 15.75 5.43 85.63 0.46 16.22 16 12 C -0.55 -29.90 9.28 25.60 0.24 -29.66 16 13 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 14 C 0.00 0.18 5.46 84.65 0.46 0.65 16 15 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 16 Si 0.99 42.09 29.54 68.60 2.03 44.12 16 17 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 20 N -0.56 -20.56 8.05 -197.39 -1.59 -22.15 16 21 C 0.32 9.38 12.28 180.90 2.22 11.60 16 22 N -0.55 -14.05 10.37 -188.31 -1.95 -16.01 16 23 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 24 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 25 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.18 3.26 7.11 -2.91 -0.02 3.24 16 29 H 0.43 9.20 8.74 -92.71 -0.81 8.39 16 30 H 0.41 13.88 8.34 -92.71 -0.77 13.11 16 31 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.22 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -78.91 304.65 0.60 -78.31 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.44 Total: 18.87 kcal Atomic # 6 Polarization: 38.05 SS G_CDS: 8.11 Total: 46.16 kcal Atomic # 7 Polarization: -141.50 SS G_CDS: -7.67 Total: -149.17 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.44 Total: -38.29 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -78.91 0.60 -78.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488939629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.597 kcal (2) G-P(sol) polarization free energy of solvation -78.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds