Wall clock time and date at job start Mon Mar 30 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48505 * 109.46835 * 240.00259 * 3 2 1 5 5 H 1.48500 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47401 * 120.00407 * 3 2 1 7 7 C 1.39941 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 197.84807 * 7 2 1 9 9 C 1.41399 * 120.00319 * 17.84028 * 7 2 1 10 10 C 1.40712 * 120.24577 * 204.38609 * 9 7 2 11 11 C 1.37613 * 119.74639 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25000 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.75530 * 179.97438 * 12 11 10 14 14 N 1.46498 * 109.47331 * 89.99842 * 13 12 11 15 15 C 1.34775 * 120.00105 * 180.02562 * 14 13 12 16 16 O 1.21585 * 120.00001 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00207 * 179.97438 * 15 14 13 18 18 C 1.46499 * 120.00185 * 180.02562 * 17 15 14 19 19 C 1.52993 * 109.47114 * 180.02562 * 18 17 15 20 20 F 1.39900 * 109.47486 * 179.97438 * 19 18 17 21 21 C 1.38637 * 120.49712 * 0.25307 * 12 11 10 22 22 C 1.37624 * 120.24810 * 359.43976 * 21 12 11 23 23 H 0.96994 * 119.99970 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.12698 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.88059 * 179.97438 * 11 10 9 26 26 H 1.08999 * 109.47489 * 210.00383 * 13 12 11 27 27 H 1.09005 * 109.46730 * 329.99949 * 13 12 11 28 28 H 0.96996 * 119.99919 * 359.97438 * 14 13 12 29 29 H 0.97001 * 119.99308 * 359.97438 * 17 15 14 30 30 H 1.09006 * 109.46742 * 299.99872 * 18 17 15 31 31 H 1.08995 * 109.47191 * 59.99413 * 18 17 15 32 32 H 1.08998 * 109.47236 * 299.99728 * 19 18 17 33 33 H 1.09007 * 109.47402 * 59.99399 * 19 18 17 34 34 H 1.08005 * 119.87800 * 179.70867 * 21 12 11 35 35 H 1.08002 * 120.12450 * 180.27756 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2346 0.2861 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0825 11 6 1.1799 -4.8065 -0.2899 12 6 0.0666 -4.7503 -1.1142 13 6 -0.6318 -6.0238 -1.5156 14 7 -1.6748 -6.3384 -0.5361 15 6 -2.4343 -7.4410 -0.6910 16 8 -2.2534 -8.1749 -1.6433 17 7 -3.3935 -7.7307 0.2104 18 6 -4.2186 -8.9295 0.0424 19 6 -5.2226 -9.0229 1.1931 20 9 -6.0110 -10.1674 1.0324 21 6 -0.4055 -3.5317 -1.5768 22 6 0.2210 -2.3618 -1.2121 23 1 -0.4850 0.8400 0.0004 24 1 2.6931 -3.6960 0.7245 25 1 1.5419 -5.7618 0.0606 26 1 -1.0837 -5.8960 -2.4992 27 1 0.0910 -6.8390 -1.5511 28 1 -1.8184 -5.7535 0.2242 29 1 -3.5370 -7.1457 0.9708 30 1 -4.7559 -8.8710 -0.9042 31 1 -3.5804 -9.8130 0.0439 32 1 -4.6858 -9.0812 2.1399 33 1 -5.8609 -8.1392 1.1911 34 1 -1.2708 -3.4998 -2.2224 35 1 -0.1512 -1.4132 -1.5700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571878300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:16 Heat of formation + Delta-G solvation = -94.512355 kcal Electronic energy + Delta-G solvation = -18791.377311 eV Core-core repulsion = 15509.000530 eV Total energy + Delta-G solvation = -3282.376780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -48.66531 -41.03707 -39.47921 -36.57106 -35.98121 -35.06511 -32.22871 -31.18164 -30.46154 -28.27504 -25.41463 -23.81038 -22.88607 -22.05800 -21.79327 -19.52180 -19.22704 -17.79618 -17.44867 -17.18396 -16.54215 -16.42369 -16.08559 -15.82174 -15.51115 -15.46984 -14.91083 -14.70458 -14.31127 -14.18345 -13.81482 -13.54001 -13.38741 -12.80963 -12.71664 -12.48080 -12.20226 -12.09989 -11.88602 -11.57246 -11.40680 -11.27586 -11.01523 -10.41469 -9.76227 -9.38931 -9.28102 -8.66609 -6.36321 0.82974 1.14900 1.39080 1.46320 1.50997 1.80657 2.13803 2.20200 2.70635 3.35549 3.56075 3.76688 3.87740 4.12347 4.19128 4.34319 4.36781 4.53404 4.67429 4.69744 4.78071 4.93152 5.05932 5.15085 5.36339 5.39645 5.43735 5.54007 5.69457 5.88479 6.04313 6.09364 6.21893 6.36959 6.68617 6.92394 7.00953 7.09610 7.56222 8.29586 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.036508 B = 0.003112 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.777226 B = 8994.196924 C = 9372.242879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.244 4.244 11 C -0.066 4.066 12 C -0.227 4.227 13 C 0.212 3.788 14 N -0.727 5.727 15 C 0.699 3.301 16 O -0.640 6.640 17 N -0.732 5.732 18 C 0.107 3.893 19 C 0.061 3.939 20 F -0.224 7.224 21 C -0.081 4.081 22 C -0.192 4.192 23 H 0.289 0.711 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.407 0.593 29 H 0.415 0.585 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 -8.278 4.254 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.263 4.263 11 C -0.085 4.085 12 C -0.228 4.228 13 C 0.089 3.911 14 N -0.382 5.382 15 C 0.399 3.601 16 O -0.522 6.522 17 N -0.390 5.390 18 C -0.018 4.018 19 C 0.006 3.994 20 F -0.205 7.205 21 C -0.100 4.100 22 C -0.212 4.212 23 H 0.100 0.900 24 H 0.116 0.884 25 H 0.134 0.866 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.242 0.758 29 H 0.252 0.748 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.900 -8.827 3.400 12.324 hybrid contribution 0.258 1.297 0.545 1.430 sum -7.642 -7.530 3.945 11.431 Atomic orbital electron populations 1.69851 1.08901 1.30741 1.34849 1.26729 0.95499 1.04425 0.91200 0.85285 0.78857 0.75784 0.80030 1.18678 1.19176 1.18357 1.19874 0.98444 0.92592 1.41715 0.90574 1.17999 0.91688 0.93078 0.88858 1.21161 1.04546 0.93009 1.07620 1.20679 0.94721 0.96925 0.96148 1.19188 1.01345 0.93143 1.09148 1.19594 0.87738 0.93474 0.90332 1.45408 1.37041 1.25625 1.30106 1.16123 0.79800 0.81586 0.82611 1.90880 1.73900 1.52904 1.34490 1.44643 1.36824 1.28778 1.28772 1.21667 0.92956 0.87502 0.99679 1.22131 0.92256 0.85973 0.99041 1.92764 1.76414 1.54216 1.97099 1.20760 0.98235 0.92330 0.98659 1.21262 1.00410 0.97063 1.02423 0.90001 0.88396 0.86610 0.92815 0.92305 0.75794 0.74793 0.91865 0.91725 0.87693 0.87818 0.87761 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.89 10.95 21.83 0.24 -40.65 16 2 C 0.04 1.81 5.14 85.25 0.44 2.25 16 3 Si 0.98 36.71 29.60 68.60 2.03 38.74 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 7 C -0.50 -25.82 9.05 23.46 0.21 -25.61 16 8 H 0.08 3.82 7.91 -2.91 -0.02 3.80 16 9 C 0.09 4.45 5.57 -21.29 -0.12 4.33 16 10 C -0.24 -11.28 9.80 22.73 0.22 -11.06 16 11 C -0.07 -2.66 9.67 22.22 0.21 -2.45 16 12 C -0.23 -8.82 5.27 -19.68 -0.10 -8.92 16 13 C 0.21 7.16 5.79 85.63 0.50 7.66 16 14 N -0.73 -21.09 5.55 -482.31 -2.68 -23.77 16 15 C 0.70 20.71 8.57 179.05 1.53 22.24 16 16 O -0.64 -24.59 16.34 -3.98 -0.07 -24.66 16 17 N -0.73 -14.47 5.56 -478.54 -2.66 -17.13 16 18 C 0.11 1.95 6.13 86.38 0.53 2.47 16 19 C 0.06 0.69 7.67 71.98 0.55 1.24 16 20 F -0.22 -3.93 17.36 44.97 0.78 -3.15 16 21 C -0.08 -3.49 9.67 22.22 0.21 -3.28 16 22 C -0.19 -9.60 8.70 22.73 0.20 -9.40 16 23 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 24 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 25 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 26 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 27 H 0.06 1.99 8.08 -2.38 -0.02 1.97 16 28 H 0.41 10.44 8.48 -92.71 -0.79 9.65 16 29 H 0.42 5.32 8.49 -92.71 -0.79 4.54 16 30 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.10 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.10 5.31 6.16 -2.91 -0.02 5.29 16 Total: -1.00 -63.33 309.93 1.59 -61.74 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.45 Total: 29.38 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.39 Total: -20.51 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -5.10 Total: -81.55 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.07 Total: -24.66 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -63.33 1.59 -61.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571878300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.770 kcal (2) G-P(sol) polarization free energy of solvation -63.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds