Wall clock time and date at job start Mon Mar 30 2020 04:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00012 * 2 1 4 4 H 1.48503 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46752 * 299.99839 * 3 2 1 6 6 H 1.48497 * 109.47133 * 59.99815 * 3 2 1 7 7 C 1.37880 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00221 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00229 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46990 * 299.99942 * 9 7 2 12 12 C 1.38551 * 120.43419 * 99.99310 * 11 9 7 13 13 C 1.38701 * 118.45305 * 180.02562 * 12 11 9 14 14 C 1.38145 * 119.22561 * 0.02562 * 13 12 11 15 15 N 1.31916 * 120.79633 * 359.97438 * 14 13 12 16 16 C 1.32057 * 121.68450 * 359.97438 * 15 14 13 17 17 F 1.35102 * 119.64986 * 180.02562 * 16 15 14 18 18 N 1.46904 * 109.47328 * 59.99550 * 9 7 2 19 19 C 1.47012 * 111.00205 * 183.63887 * 18 9 7 20 20 C 1.53096 * 109.26081 * 177.60665 * 19 18 9 21 21 O 1.43021 * 109.25484 * 56.84897 * 20 19 18 22 22 C 1.43019 * 113.73776 * 301.32705 * 21 20 19 23 23 C 1.47013 * 110.99988 * 60.00084 * 18 9 7 24 24 H 0.97003 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.77130 * 0.02562 * 12 11 9 26 26 H 1.07998 * 120.39122 * 179.97438 * 13 12 11 27 27 H 1.07995 * 119.60781 * 179.72320 * 14 13 12 28 28 H 1.08996 * 109.50618 * 297.54724 * 19 18 9 29 29 H 1.09003 * 109.50425 * 57.66893 * 19 18 9 30 30 H 1.08995 * 109.50544 * 296.91623 * 20 19 18 31 31 H 1.08996 * 109.54232 * 176.80555 * 20 19 18 32 32 H 1.08996 * 109.50643 * 298.74244 * 22 21 20 33 33 H 1.09000 * 109.54055 * 178.62323 * 22 21 20 34 34 H 1.09001 * 109.50783 * 302.33209 * 23 18 9 35 35 H 1.09002 * 109.50152 * 62.45546 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 1.9594 -3.3276 0.0015 11 6 0.3842 -2.5787 1.2307 12 6 -0.9694 -2.2931 1.1551 13 6 -1.7285 -2.3787 2.3127 14 6 -1.1154 -2.7429 3.4959 15 7 0.1762 -3.0084 3.5335 16 6 0.9305 -2.9384 2.4518 17 9 2.2491 -3.2196 2.5372 18 7 0.4069 -2.5773 -1.1992 19 6 -0.4093 -3.8000 -1.1904 20 6 -1.3147 -3.8117 -2.4249 21 8 -0.5088 -3.7070 -3.6018 22 6 0.2986 -2.5273 -3.6437 23 6 1.2202 -2.5026 -2.4215 24 1 -0.4850 0.8401 -0.0004 25 1 -1.4229 -2.0104 0.2165 26 1 -2.7864 -2.1624 2.2897 27 1 -1.6997 -2.8071 4.4019 28 1 0.2430 -4.6731 -1.2091 29 1 -1.0221 -3.8221 -0.2893 30 1 -2.0034 -2.9682 -2.3791 31 1 -1.8808 -4.7427 -2.4530 32 1 -0.3433 -1.6464 -3.6333 33 1 0.8998 -2.5290 -4.5529 34 1 1.7969 -1.5776 -2.4191 35 1 1.8986 -3.3550 -2.4598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575307507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:51 Heat of formation + Delta-G solvation = -30.106434 kcal Electronic energy + Delta-G solvation = -21379.903403 eV Core-core repulsion = 18100.319473 eV Total energy + Delta-G solvation = -3279.583930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.98954 -39.48480 -38.48577 -35.65980 -32.51707 -31.64253 -30.43160 -30.32330 -27.70923 -25.36116 -23.58889 -23.13786 -22.22653 -20.81098 -19.56541 -17.15757 -16.77542 -16.14405 -15.70217 -15.40062 -15.15390 -14.76761 -14.72615 -14.36158 -13.98810 -13.66505 -13.07236 -12.85307 -12.57230 -12.49024 -12.11462 -11.98944 -11.56155 -11.28238 -11.04800 -10.84827 -10.74092 -10.61551 -10.17262 -9.89332 -9.57498 -9.04865 -8.88810 -8.80180 -8.48541 -7.79092 -7.14817 -6.10928 -4.28848 1.87210 2.18636 3.19629 3.29423 3.33151 4.29142 4.33928 4.44793 4.58040 4.78763 5.21448 5.51285 5.55737 5.66528 5.70070 5.75241 5.81533 5.89528 5.96055 6.02113 6.12462 6.21512 6.40080 6.43087 6.55119 6.62318 6.77533 6.83545 7.10645 7.32325 7.54486 7.62982 7.67193 7.82757 8.17060 8.34680 8.49420 8.77738 9.39621 10.86368 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.011090 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.388488 B = 2524.190068 C = 3637.930942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.088 3.912 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.253 3.747 10 H 0.009 0.991 11 C -0.088 4.088 12 C 0.006 3.994 13 C -0.207 4.207 14 C 0.095 3.905 15 N -0.532 5.532 16 C 0.282 3.718 17 F -0.122 7.122 18 N -0.496 5.496 19 C 0.001 3.999 20 C 0.069 3.931 21 O -0.397 6.397 22 C 0.065 3.935 23 C 0.040 3.960 24 H 0.259 0.741 25 H 0.158 0.842 26 H 0.124 0.876 27 H 0.147 0.853 28 H 0.022 0.978 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 -4.121 -2.044 6.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.120 4.120 3 Si 0.713 3.287 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.147 3.853 10 H 0.027 0.973 11 C -0.092 4.092 12 C -0.020 4.020 13 C -0.227 4.227 14 C -0.062 4.062 15 N -0.247 5.247 16 C 0.130 3.870 17 F -0.101 7.101 18 N -0.222 5.222 19 C -0.127 4.127 20 C -0.008 4.008 21 O -0.316 6.316 22 C -0.012 4.012 23 C -0.088 4.088 24 H 0.069 0.931 25 H 0.175 0.825 26 H 0.142 0.858 27 H 0.164 0.836 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.500 -3.979 -1.411 6.171 hybrid contribution 0.845 0.871 -0.269 1.243 sum -3.655 -3.108 -1.680 5.084 Atomic orbital electron populations 1.69974 1.05671 1.26041 1.45540 1.24910 0.94767 0.98751 0.93583 0.86644 0.80514 0.83870 0.77701 1.19641 1.20766 1.20996 1.20853 0.92532 0.89076 1.53685 0.91862 1.18072 0.87819 0.96197 0.83262 0.97290 1.20929 0.95523 0.96850 0.95889 1.21483 0.92102 0.89387 0.98993 1.22080 1.01125 1.05096 0.94431 1.22034 0.88807 0.97755 0.97571 1.66800 1.07683 1.19339 1.30910 1.17972 0.79055 0.99728 0.90277 1.91521 1.30877 1.90974 1.96763 1.62403 1.25307 1.32378 1.02066 1.22991 0.97889 0.93046 0.98795 1.22562 0.92692 1.01018 0.84516 1.87862 1.58641 1.43719 1.41411 1.22690 0.93150 0.87535 0.97828 1.22417 0.94846 1.01777 0.89808 0.93070 0.82471 0.85774 0.83600 0.95975 0.90062 0.92638 0.89886 0.92576 0.89777 0.88569 0.96283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.85 9.97 55.43 0.55 -20.30 16 2 C 0.09 2.20 5.23 -17.82 -0.09 2.11 16 3 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -13.23 7.32 -34.44 -0.25 -13.48 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.25 5.89 1.62 -70.02 -0.11 5.77 16 10 H 0.01 0.23 7.96 -51.93 -0.41 -0.19 16 11 C -0.09 -1.98 3.90 -104.40 -0.41 -2.39 16 12 C 0.01 0.13 5.58 -39.29 -0.22 -0.09 16 13 C -0.21 -3.68 10.11 -39.44 -0.40 -4.08 16 14 C 0.10 1.72 11.18 -17.55 -0.20 1.53 16 15 N -0.53 -11.44 10.37 -13.59 -0.14 -11.58 16 16 C 0.28 6.51 8.36 -17.35 -0.15 6.36 16 17 F -0.12 -2.87 16.70 2.25 0.04 -2.83 16 18 N -0.50 -10.40 3.11 -229.12 -0.71 -11.11 16 19 C 0.00 0.03 4.79 -3.71 -0.02 0.01 16 20 C 0.07 1.12 7.01 37.21 0.26 1.38 16 21 O -0.40 -7.03 10.83 -35.23 -0.38 -7.41 16 22 C 0.06 1.11 7.01 37.21 0.26 1.37 16 23 C 0.04 0.78 5.42 -3.71 -0.02 0.76 16 24 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 25 H 0.16 3.32 6.06 -52.49 -0.32 3.00 16 26 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.47 5.00 -51.93 -0.26 1.21 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 2.02 7.01 -51.93 -0.36 1.66 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -27.14 286.48 -6.97 -34.11 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.28 Total: 0.55 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.34 Total: -0.73 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.30 Total: -42.99 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.38 Total: -7.41 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.14 -6.97 -34.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575307507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.007 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds