Wall clock time and date at job start Mon Mar 30 2020 04:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00012 * 2 1 4 4 H 1.48503 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46752 * 299.99839 * 3 2 1 6 6 H 1.48497 * 109.47133 * 59.99815 * 3 2 1 7 7 C 1.37880 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00221 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00229 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46990 * 299.99942 * 9 7 2 12 12 C 1.38551 * 120.43419 * 99.99310 * 11 9 7 13 13 C 1.38701 * 118.45305 * 180.02562 * 12 11 9 14 14 C 1.38145 * 119.22561 * 0.02562 * 13 12 11 15 15 N 1.31916 * 120.79633 * 359.97438 * 14 13 12 16 16 C 1.32057 * 121.68450 * 359.97438 * 15 14 13 17 17 F 1.35102 * 119.64986 * 180.02562 * 16 15 14 18 18 N 1.46904 * 109.47328 * 59.99550 * 9 7 2 19 19 C 1.47012 * 111.00205 * 183.63887 * 18 9 7 20 20 C 1.53096 * 109.26081 * 177.60665 * 19 18 9 21 21 O 1.43021 * 109.25484 * 56.84897 * 20 19 18 22 22 C 1.43019 * 113.73776 * 301.32705 * 21 20 19 23 23 C 1.47013 * 110.99988 * 60.00084 * 18 9 7 24 24 H 0.97003 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.77130 * 0.02562 * 12 11 9 26 26 H 1.07998 * 120.39122 * 179.97438 * 13 12 11 27 27 H 1.07995 * 119.60781 * 179.72320 * 14 13 12 28 28 H 1.08996 * 109.50618 * 297.54724 * 19 18 9 29 29 H 1.09003 * 109.50425 * 57.66893 * 19 18 9 30 30 H 1.08995 * 109.50544 * 296.91623 * 20 19 18 31 31 H 1.08996 * 109.54232 * 176.80555 * 20 19 18 32 32 H 1.08996 * 109.50643 * 298.74244 * 22 21 20 33 33 H 1.09000 * 109.54055 * 178.62323 * 22 21 20 34 34 H 1.09001 * 109.50783 * 302.33209 * 23 18 9 35 35 H 1.09002 * 109.50152 * 62.45546 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 1.9594 -3.3276 0.0015 11 6 0.3842 -2.5787 1.2307 12 6 -0.9694 -2.2931 1.1551 13 6 -1.7285 -2.3787 2.3127 14 6 -1.1154 -2.7429 3.4959 15 7 0.1762 -3.0084 3.5335 16 6 0.9305 -2.9384 2.4518 17 9 2.2491 -3.2196 2.5372 18 7 0.4069 -2.5773 -1.1992 19 6 -0.4093 -3.8000 -1.1904 20 6 -1.3147 -3.8117 -2.4249 21 8 -0.5088 -3.7070 -3.6018 22 6 0.2986 -2.5273 -3.6437 23 6 1.2202 -2.5026 -2.4215 24 1 -0.4850 0.8401 -0.0004 25 1 -1.4229 -2.0104 0.2165 26 1 -2.7864 -2.1624 2.2897 27 1 -1.6997 -2.8071 4.4019 28 1 0.2430 -4.6731 -1.2091 29 1 -1.0221 -3.8221 -0.2893 30 1 -2.0034 -2.9682 -2.3791 31 1 -1.8808 -4.7427 -2.4530 32 1 -0.3433 -1.6464 -3.6333 33 1 0.8998 -2.5290 -4.5529 34 1 1.7969 -1.5776 -2.4191 35 1 1.8986 -3.3550 -2.4598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575307507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:50 Heat of formation + Delta-G solvation = -47.305622 kcal Electronic energy + Delta-G solvation = -21380.649216 eV Core-core repulsion = 18100.319473 eV Total energy + Delta-G solvation = -3280.329743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.75181 -41.06524 -39.97162 -37.25678 -34.31156 -33.24611 -31.99851 -31.82374 -29.37682 -27.01720 -25.15262 -24.72166 -23.81286 -22.44417 -21.11623 -18.82191 -18.54023 -17.84523 -17.17343 -16.94248 -16.78957 -16.56869 -16.28225 -15.77929 -15.51951 -15.26083 -14.69752 -14.51255 -14.29486 -14.12995 -13.78446 -13.56602 -13.00938 -12.94504 -12.82937 -12.64717 -12.24196 -12.16485 -11.88761 -11.56614 -11.20011 -10.72188 -10.55017 -10.38795 -10.12649 -9.45282 -8.82152 -8.00621 -6.22969 0.28134 0.60144 1.37524 1.43518 1.50677 2.42129 2.84718 2.94520 3.02727 3.13902 3.41505 4.02039 4.12686 4.23573 4.27857 4.31882 4.34355 4.39296 4.47413 4.51161 4.75412 4.81920 4.85984 4.92699 4.99094 5.08946 5.16086 5.24348 5.50093 5.69356 5.71599 5.92203 6.08893 6.26102 6.41217 6.66396 6.87322 6.93066 7.45707 8.94568 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.011090 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.388488 B = 2524.190068 C = 3637.930942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.062 3.938 3 Si 0.932 3.068 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.288 1.288 7 C -0.544 4.544 8 H 0.040 0.960 9 C 0.257 3.743 10 H -0.019 1.019 11 C -0.104 4.104 12 C 0.004 3.996 13 C -0.192 4.192 14 C 0.101 3.899 15 N -0.548 5.548 16 C 0.250 3.750 17 F -0.137 7.137 18 N -0.501 5.501 19 C 0.003 3.997 20 C 0.073 3.927 21 O -0.403 6.403 22 C 0.074 3.926 23 C 0.039 3.961 24 H 0.260 0.740 25 H 0.152 0.848 26 H 0.168 0.832 27 H 0.194 0.806 28 H 0.012 0.988 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -3.952 -1.994 8.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.145 4.145 3 Si 0.759 3.241 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.214 1.214 7 C -0.582 4.582 8 H 0.059 0.941 9 C 0.150 3.850 10 H -0.001 1.001 11 C -0.109 4.109 12 C -0.022 4.022 13 C -0.211 4.211 14 C -0.056 4.056 15 N -0.263 5.263 16 C 0.099 3.901 17 F -0.117 7.117 18 N -0.226 5.226 19 C -0.125 4.125 20 C -0.004 4.004 21 O -0.322 6.322 22 C -0.003 4.003 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.170 0.830 26 H 0.186 0.814 27 H 0.210 0.790 28 H 0.030 0.970 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -6.974 -3.817 -1.376 8.068 hybrid contribution 1.545 0.767 -0.218 1.739 sum -5.429 -3.050 -1.594 6.428 Atomic orbital electron populations 1.70027 1.05821 1.26321 1.45509 1.25265 0.95522 1.00245 0.93505 0.85937 0.79160 0.81430 0.77609 1.20539 1.19838 1.21399 1.20859 0.91739 0.90681 1.54881 0.94125 1.17881 0.87985 0.94217 0.84938 1.00138 1.20886 0.96575 0.98219 0.95173 1.21503 0.91333 0.89394 1.00018 1.22512 1.02965 1.02693 0.92968 1.22889 0.87789 0.95384 0.99519 1.66876 1.09203 1.19913 1.30338 1.18224 0.78968 1.01739 0.91211 1.91466 1.32009 1.91335 1.96877 1.62306 1.24939 1.33843 1.01492 1.23048 0.97668 0.91397 1.00399 1.22684 0.92020 1.02890 0.82801 1.87864 1.58707 1.43758 1.41852 1.22663 0.92768 0.87390 0.97448 1.22433 0.95318 1.00401 0.90766 0.93023 0.83019 0.81401 0.78968 0.97010 0.89664 0.92284 0.86651 0.92904 0.87059 0.90545 0.97066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.51 9.97 21.45 0.21 -41.30 16 2 C 0.06 3.12 5.23 84.66 0.44 3.56 16 3 Si 0.93 41.43 29.54 68.60 2.03 43.46 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.54 -28.52 7.32 25.60 0.19 -28.33 16 8 H 0.04 2.24 7.81 -2.91 -0.02 2.21 16 9 C 0.26 12.40 1.62 43.42 0.07 12.47 16 10 H -0.02 -0.98 7.96 -2.39 -0.02 -1.00 16 11 C -0.10 -4.75 3.90 -19.72 -0.08 -4.82 16 12 C 0.00 0.14 5.58 22.46 0.13 0.27 16 13 C -0.19 -6.11 10.11 22.36 0.23 -5.88 16 14 C 0.10 3.31 11.18 84.66 0.95 4.26 16 15 N -0.55 -22.89 10.37 -196.91 -2.04 -24.93 16 16 C 0.25 11.69 8.36 84.73 0.71 12.40 16 17 F -0.14 -6.76 16.70 44.97 0.75 -6.01 16 18 N -0.50 -21.21 3.11 -878.81 -2.73 -23.94 16 19 C 0.00 0.12 4.79 86.31 0.41 0.53 16 20 C 0.07 2.20 7.01 72.01 0.50 2.71 16 21 O -0.40 -13.43 10.83 -148.98 -1.61 -15.04 16 22 C 0.07 2.44 7.01 72.01 0.50 2.95 16 23 C 0.04 1.57 5.42 86.31 0.47 2.04 16 24 H 0.26 12.36 8.31 -92.71 -0.77 11.59 16 25 H 0.15 6.16 6.06 -2.91 -0.02 6.14 16 26 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 27 H 0.19 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 2.99 5.00 -2.39 -0.01 2.98 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 3.04 8.14 -2.39 -0.02 3.03 16 34 H 0.08 3.33 7.01 -2.39 -0.02 3.31 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -59.40 286.48 2.22 -57.18 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.10 Total: 8.44 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.52 Total: 2.15 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -4.56 Total: -90.17 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -1.61 Total: -15.04 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.75 Total: -6.01 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -59.40 2.22 -57.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575307507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.873 kcal (2) G-P(sol) polarization free energy of solvation -59.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds