Wall clock time and date at job start Mon Mar 30 2020 04:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00155 * 2 1 4 4 C 1.53003 * 109.47135 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46804 * 65.00297 * 4 3 2 6 6 C 1.34772 * 119.99655 * 180.02562 * 5 4 3 7 7 O 1.21601 * 120.00251 * 0.02562 * 6 5 4 8 8 C 1.47501 * 120.00099 * 179.97438 * 6 5 4 9 9 C 1.41657 * 120.25796 * 359.97438 * 8 6 5 10 10 C 1.36028 * 119.11734 * 180.02562 * 9 8 6 11 11 C 1.40653 * 119.62135 * 359.76384 * 10 9 8 12 12 O 1.21942 * 119.73678 * 180.24925 * 11 10 9 13 13 N 1.34551 * 120.52274 * 0.50750 * 11 10 9 14 14 C 1.37018 * 119.53876 * 179.73174 * 13 11 10 15 15 H 1.08006 * 119.99861 * 332.37370 * 14 13 11 16 16 C 1.39196 * 120.00180 * 152.36968 * 14 13 11 17 17 N 1.31168 * 120.00115 * 333.44275 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 153.44995 * 16 14 13 19 19 H 1.48501 * 109.46965 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.46876 * 299.99623 * 18 16 14 21 21 H 1.48495 * 109.47406 * 60.00076 * 18 16 14 22 22 C 1.35636 * 120.92664 * 359.46425 * 13 11 10 23 23 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47179 * 300.00106 * 1 2 3 25 25 H 1.09000 * 109.46961 * 59.99890 * 1 2 3 26 26 H 1.09003 * 109.47231 * 60.00351 * 3 2 1 27 27 H 1.08991 * 109.47479 * 300.00274 * 3 2 1 28 28 H 1.08998 * 109.47003 * 305.00306 * 4 3 2 29 29 H 1.08998 * 109.47028 * 185.00423 * 4 3 2 30 30 H 0.96999 * 119.99816 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.44029 * 0.04319 * 9 8 6 32 32 H 1.07997 * 120.18981 * 180.02562 * 10 9 8 33 33 H 0.97004 * 119.99875 * 354.42423 * 17 16 14 34 34 H 1.07995 * 119.83705 * 180.26786 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 5.2894 0.3550 -1.4733 7 8 6.1076 0.6812 -0.6350 8 6 5.7336 -0.2704 -2.7332 9 6 4.7851 -0.6541 -3.7129 10 6 5.2204 -1.2294 -4.8661 11 6 6.5983 -1.4279 -5.0670 12 8 6.9912 -1.9392 -6.1020 13 7 7.4860 -1.0626 -4.1241 14 6 8.8232 -1.2703 -4.3386 15 1 9.1484 -2.0744 -4.9822 16 6 9.7626 -0.4451 -3.7271 17 7 9.4408 0.7829 -3.3969 18 14 11.4818 -1.0862 -3.3768 19 1 12.2843 -0.0204 -2.7248 20 1 11.3970 -2.2630 -2.4750 21 1 12.1307 -1.4852 -4.6516 22 6 7.0760 -0.4868 -2.9665 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8508 0.5683 0.8427 29 1 3.9785 2.1764 0.0903 30 1 3.3239 0.3027 -1.9191 31 1 3.7304 -0.4917 -3.5465 32 1 4.5124 -1.5282 -5.6249 33 1 8.5764 1.1426 -3.6507 34 1 7.8040 -0.1966 -2.2235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586553786.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:55 Heat of formation + Delta-G solvation = -88.882258 kcal Electronic energy + Delta-G solvation = -19848.885940 eV Core-core repulsion = 16554.380509 eV Total energy + Delta-G solvation = -3294.505431 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50954 -39.07631 -37.96512 -35.87192 -34.60142 -34.33615 -31.85943 -29.99699 -28.80126 -26.57776 -25.80381 -23.63972 -22.43497 -22.18364 -20.42526 -19.07697 -17.15266 -16.85072 -16.61814 -16.11816 -15.63070 -15.32087 -15.01682 -14.79501 -14.68866 -14.40761 -14.00374 -13.42570 -13.21349 -12.82009 -12.46631 -12.31762 -12.01875 -11.89837 -11.44249 -11.38775 -11.09033 -10.73968 -10.60226 -10.41885 -9.99800 -9.82961 -9.36783 -9.04013 -8.80497 -8.76944 -7.56314 -7.06159 -4.71254 1.86046 2.14236 3.08623 3.13327 3.33203 3.43034 3.55720 3.76946 3.81107 4.21205 4.40866 4.74312 4.91845 4.94874 5.05286 5.09931 5.15328 5.39843 5.46192 5.55811 5.64589 5.76026 5.91336 5.96995 6.38779 6.71839 6.84086 6.88035 6.97274 7.09762 7.29031 7.50009 7.88648 7.98327 8.16642 8.60809 8.79232 9.26385 9.84053 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.004942 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.483836 B = 5664.327956 C = 6530.426770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.733 5.733 6 C 0.584 3.416 7 O -0.556 6.556 8 C -0.294 4.294 9 C -0.019 4.019 10 C -0.290 4.290 11 C 0.474 3.526 12 O -0.572 6.572 13 N -0.292 5.292 14 C -0.418 4.418 15 H 0.122 0.878 16 C 0.025 3.975 17 N -0.808 5.808 18 Si 1.086 2.914 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.273 1.273 22 C 0.144 3.856 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.399 0.601 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.289 0.711 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 2.287 7.324 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.028 4.028 4 C 0.001 3.999 5 N -0.387 5.387 6 C 0.375 3.625 7 O -0.436 6.436 8 C -0.302 4.302 9 C -0.042 4.042 10 C -0.313 4.313 11 C 0.282 3.718 12 O -0.460 6.460 13 N 0.023 4.977 14 C -0.546 4.546 15 H 0.140 0.860 16 C -0.191 4.191 17 N -0.434 5.434 18 Si 0.907 3.093 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.198 1.198 22 C -0.001 4.001 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.235 0.765 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.749 2.453 7.899 13.563 hybrid contribution -2.365 -0.075 -1.052 2.589 sum -13.114 2.378 6.847 14.984 Atomic orbital electron populations 1.22755 0.81030 1.02897 0.99895 1.87972 1.19668 1.27538 1.95398 1.22844 0.93557 0.85293 1.01144 1.21266 0.91194 0.99228 0.88163 1.45693 1.07782 1.64887 1.20293 1.17825 0.81442 0.77155 0.86054 1.90736 1.52868 1.52983 1.47021 1.18697 0.92768 1.20215 0.98559 1.20929 0.97578 0.93336 0.92360 1.21459 0.94428 1.14355 1.01094 1.17316 0.87246 0.83590 0.83653 1.90756 1.80948 1.47653 1.26604 1.41713 1.09172 1.36009 1.10823 1.21309 0.79498 1.19137 1.34673 0.86002 1.27234 1.06715 0.92700 0.92442 1.70687 1.25457 1.12622 1.34655 0.83296 0.71648 0.76459 0.77936 1.19368 1.19661 1.19789 1.22268 0.95610 0.94515 0.87672 0.89552 0.94135 0.94012 0.91772 0.92533 0.90829 0.90126 0.76542 0.86844 0.85128 0.89753 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.19 10.65 -35.23 -0.38 -4.56 16 3 C 0.05 0.45 6.07 37.16 0.23 0.67 16 4 C 0.13 1.56 6.06 -4.04 -0.02 1.53 16 5 N -0.73 -10.98 5.46 -61.36 -0.33 -11.32 16 6 C 0.58 11.56 7.76 -12.49 -0.10 11.46 16 7 O -0.56 -12.80 16.32 5.28 0.09 -12.71 16 8 C -0.29 -6.24 5.88 -104.92 -0.62 -6.85 16 9 C -0.02 -0.36 9.57 -39.07 -0.37 -0.73 16 10 C -0.29 -6.26 9.96 -39.46 -0.39 -6.65 16 11 C 0.47 12.42 7.35 -15.45 -0.11 12.31 16 12 O -0.57 -16.68 16.76 4.97 0.08 -16.59 16 13 N -0.29 -7.64 2.62 -64.08 -0.17 -7.81 16 14 C -0.42 -11.18 8.97 -14.88 -0.13 -11.32 16 15 H 0.12 3.34 7.56 -52.48 -0.40 2.94 16 16 C 0.03 0.63 4.75 -17.48 -0.08 0.55 16 17 N -0.81 -21.21 12.33 55.51 0.68 -20.53 16 18 Si 1.09 21.44 30.00 -169.99 -5.10 16.34 16 19 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 C 0.14 3.49 7.91 -15.97 -0.13 3.37 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 5.18 6.54 -40.82 -0.27 4.92 16 31 H 0.11 1.64 6.48 -52.49 -0.34 1.30 16 32 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 33 H 0.29 7.81 6.97 -40.82 -0.28 7.53 16 34 H 0.17 4.27 5.93 -52.49 -0.31 3.96 16 LS Contribution 299.27 15.07 4.51 4.51 Total: -1.00 -32.57 299.27 -5.01 -37.58 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.78 Total: 9.41 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.62 Total: 5.68 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.18 Total: -39.65 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.21 Total: -33.87 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.10 Total: 16.34 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.57 -5.01 -37.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586553786.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.299 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds