Wall clock time and date at job start Mon Mar 30 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42893 * 114.00155 * 2 1 4 4 C 1.53003 * 109.47135 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46804 * 65.00297 * 4 3 2 6 6 C 1.34772 * 119.99655 * 180.02562 * 5 4 3 7 7 O 1.21601 * 120.00251 * 0.02562 * 6 5 4 8 8 C 1.47501 * 120.00099 * 179.97438 * 6 5 4 9 9 C 1.41657 * 120.25796 * 359.97438 * 8 6 5 10 10 C 1.36028 * 119.11734 * 180.02562 * 9 8 6 11 11 C 1.40653 * 119.62135 * 359.76384 * 10 9 8 12 12 O 1.21942 * 119.73678 * 180.24925 * 11 10 9 13 13 N 1.34551 * 120.52274 * 0.50750 * 11 10 9 14 14 C 1.37018 * 119.53876 * 179.73174 * 13 11 10 15 15 H 1.08006 * 119.99861 * 332.37370 * 14 13 11 16 16 C 1.39196 * 120.00180 * 152.36968 * 14 13 11 17 17 N 1.31168 * 120.00115 * 333.44275 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 153.44995 * 16 14 13 19 19 H 1.48501 * 109.46965 * 180.02562 * 18 16 14 20 20 H 1.48501 * 109.46876 * 299.99623 * 18 16 14 21 21 H 1.48495 * 109.47406 * 60.00076 * 18 16 14 22 22 C 1.35636 * 120.92664 * 359.46425 * 13 11 10 23 23 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47179 * 300.00106 * 1 2 3 25 25 H 1.09000 * 109.46961 * 59.99890 * 1 2 3 26 26 H 1.09003 * 109.47231 * 60.00351 * 3 2 1 27 27 H 1.08991 * 109.47479 * 300.00274 * 3 2 1 28 28 H 1.08998 * 109.47003 * 305.00306 * 4 3 2 29 29 H 1.08998 * 109.47028 * 185.00423 * 4 3 2 30 30 H 0.96999 * 119.99816 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.44029 * 0.04319 * 9 8 6 32 32 H 1.07997 * 120.18981 * 180.02562 * 10 9 8 33 33 H 0.97004 * 119.99875 * 354.42423 * 17 16 14 34 34 H 1.07995 * 119.83705 * 180.26786 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 5.2894 0.3550 -1.4733 7 8 6.1076 0.6812 -0.6350 8 6 5.7336 -0.2704 -2.7332 9 6 4.7851 -0.6541 -3.7129 10 6 5.2204 -1.2294 -4.8661 11 6 6.5983 -1.4279 -5.0670 12 8 6.9912 -1.9392 -6.1020 13 7 7.4860 -1.0626 -4.1241 14 6 8.8232 -1.2703 -4.3386 15 1 9.1484 -2.0744 -4.9822 16 6 9.7626 -0.4451 -3.7271 17 7 9.4408 0.7829 -3.3969 18 14 11.4818 -1.0862 -3.3768 19 1 12.2843 -0.0204 -2.7248 20 1 11.3970 -2.2630 -2.4750 21 1 12.1307 -1.4852 -4.6516 22 6 7.0760 -0.4868 -2.9665 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8899 28 1 3.8508 0.5683 0.8427 29 1 3.9785 2.1764 0.0903 30 1 3.3239 0.3027 -1.9191 31 1 3.7304 -0.4917 -3.5465 32 1 4.5124 -1.5282 -5.6249 33 1 8.5764 1.1426 -3.6507 34 1 7.8040 -0.1966 -2.2235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586553786.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:54 Heat of formation + Delta-G solvation = -113.490510 kcal Electronic energy + Delta-G solvation = -19849.953034 eV Core-core repulsion = 16554.380509 eV Total energy + Delta-G solvation = -3295.572524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.39441 -40.57578 -38.82843 -37.85840 -36.39430 -35.67867 -33.72514 -31.35487 -30.33186 -27.81839 -27.08308 -25.22675 -24.22836 -23.36980 -22.05473 -20.86177 -18.73892 -18.38156 -17.58107 -17.54253 -17.16869 -16.98970 -16.71416 -16.13167 -15.87230 -15.73656 -15.55108 -15.11645 -14.73650 -14.36845 -13.93590 -13.84751 -13.21403 -13.10610 -12.89147 -12.62129 -12.56376 -12.40360 -12.09765 -11.94457 -11.56327 -11.08027 -10.91416 -10.77967 -10.59488 -10.11406 -9.54021 -8.95734 -6.76188 0.02090 0.38741 1.44928 1.50854 1.78981 1.95944 2.04554 2.24155 2.43132 2.58441 2.85299 3.05485 3.85301 3.90798 3.95350 4.08006 4.13036 4.23051 4.46727 4.55735 4.59301 4.63179 4.68400 4.89262 4.94677 5.09113 5.18623 5.31221 5.35001 5.44386 5.53994 6.01416 6.19016 6.24418 6.56260 6.68406 7.27306 7.30647 7.84581 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026029 B = 0.004942 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.483836 B = 5664.327956 C = 6530.426770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.055 3.945 4 C 0.119 3.881 5 N -0.708 5.708 6 C 0.583 3.417 7 O -0.592 6.592 8 C -0.281 4.281 9 C 0.008 3.992 10 C -0.282 4.282 11 C 0.444 3.556 12 O -0.623 6.623 13 N -0.308 5.308 14 C -0.461 4.461 15 H 0.101 0.899 16 C 0.000 4.000 17 N -0.829 5.829 18 Si 1.132 2.868 19 H -0.263 1.263 20 H -0.258 1.258 21 H -0.259 1.259 22 C 0.136 3.864 23 H 0.090 0.910 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.413 0.587 31 H 0.176 0.824 32 H 0.160 0.840 33 H 0.273 0.727 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.046 2.867 8.500 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.021 4.021 4 C -0.004 4.004 5 N -0.361 5.361 6 C 0.373 3.627 7 O -0.474 6.474 8 C -0.289 4.289 9 C -0.015 4.015 10 C -0.304 4.304 11 C 0.255 3.745 12 O -0.515 6.515 13 N 0.005 4.995 14 C -0.588 4.588 15 H 0.119 0.881 16 C -0.211 4.211 17 N -0.456 5.456 18 Si 0.946 3.054 19 H -0.187 1.187 20 H -0.182 1.182 21 H -0.184 1.184 22 C -0.006 4.006 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.251 0.749 31 H 0.193 0.807 32 H 0.178 0.822 33 H 0.085 0.915 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.738 3.048 9.099 16.758 hybrid contribution -1.774 -0.209 -1.297 2.207 sum -15.512 2.839 7.802 17.594 Atomic orbital electron populations 1.22920 0.79285 1.03657 1.01150 1.87919 1.21602 1.28358 1.95696 1.22826 0.90744 0.85265 1.03265 1.21505 0.93938 0.98851 0.86127 1.45554 1.06011 1.63111 1.21455 1.17665 0.82888 0.77145 0.85015 1.90734 1.54351 1.54459 1.47873 1.19162 0.91988 1.18061 0.99708 1.21396 0.99955 0.90200 0.89906 1.21754 0.92458 1.13520 1.02708 1.18146 0.89060 0.84020 0.83324 1.90706 1.81863 1.50538 1.28392 1.41745 1.09149 1.37179 1.11449 1.21295 0.80660 1.20083 1.36758 0.88077 1.28665 1.09585 0.91894 0.90925 1.70804 1.24562 1.13374 1.36842 0.82797 0.67471 0.76475 0.78665 1.18738 1.18194 1.18356 1.22319 0.96852 0.94210 0.87221 0.89178 0.92894 0.92727 0.89376 0.90632 0.92136 0.89587 0.74910 0.80724 0.82223 0.91507 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.37 10.65 -148.98 -1.59 -8.96 16 3 C 0.06 0.78 6.07 71.98 0.44 1.22 16 4 C 0.12 2.58 6.06 86.38 0.52 3.11 16 5 N -0.71 -18.65 5.46 -466.30 -2.54 -21.20 16 6 C 0.58 21.90 7.76 86.69 0.67 22.58 16 7 O -0.59 -26.91 16.32 -4.04 -0.07 -26.98 16 8 C -0.28 -11.46 5.88 -20.06 -0.12 -11.57 16 9 C 0.01 0.27 9.57 22.60 0.22 0.49 16 10 C -0.28 -11.55 9.96 22.35 0.22 -11.33 16 11 C 0.44 23.77 7.35 84.87 0.62 24.40 16 12 O -0.62 -37.81 16.76 -5.13 -0.09 -37.89 16 13 N -0.31 -16.76 2.62 -474.90 -1.24 -18.00 16 14 C -0.46 -26.07 8.97 84.11 0.75 -25.32 16 15 H 0.10 5.96 7.56 -2.91 -0.02 5.94 16 16 C 0.00 -0.01 4.75 85.02 0.40 0.40 16 17 N -0.83 -45.35 12.33 21.69 0.27 -45.08 16 18 Si 1.13 44.28 30.00 68.60 2.06 46.34 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 C 0.14 6.76 7.91 84.04 0.66 7.42 16 23 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.41 8.54 6.54 -92.71 -0.61 7.93 16 31 H 0.18 3.85 6.48 -2.91 -0.02 3.83 16 32 H 0.16 5.60 8.06 -2.91 -0.02 5.58 16 33 H 0.27 15.50 6.97 -92.71 -0.65 14.85 16 34 H 0.15 7.87 5.93 -2.91 -0.02 7.85 16 Total: -1.00 -76.06 299.27 3.10 -72.96 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.65 Total: 25.90 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 5.65 Total: 12.91 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.52 Total: -84.28 kcal Atomic # 8 Polarization: -72.09 SS G_CDS: -1.74 Total: -73.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.06 Total: 46.34 kcal Total: -76.06 3.10 -72.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586553786.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.529 kcal (2) G-P(sol) polarization free energy of solvation -76.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds