Wall clock time and date at job start Mon Mar 30 2020 04:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42894 * 114.00001 * 2 1 4 4 C 1.53002 * 109.47468 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46986 * 64.99631 * 4 3 2 6 6 C 1.34782 * 120.00175 * 180.02562 * 5 4 3 7 7 O 1.21519 * 119.99480 * 0.02562 * 6 5 4 8 8 C 1.48143 * 119.99829 * 179.97438 * 6 5 4 9 9 C 1.41359 * 120.54981 * 359.97438 * 8 6 5 10 10 C 1.35126 * 119.82141 * 179.76550 * 9 8 6 11 11 N 1.36138 * 120.96111 * 0.51175 * 10 9 8 12 12 C 1.36492 * 119.42920 * 179.75575 * 11 10 9 13 13 H 1.08006 * 119.99654 * 152.28132 * 12 11 10 14 14 C 1.39512 * 120.00079 * 332.27803 * 12 11 10 15 15 N 1.30974 * 119.99898 * 333.47048 * 14 12 11 16 16 Si 1.86794 * 119.99761 * 153.46892 * 14 12 11 17 17 H 1.48500 * 109.47077 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47299 * 300.00158 * 16 14 12 19 19 H 1.48499 * 109.47586 * 60.00019 * 16 14 12 20 20 C 1.34589 * 121.14116 * 359.48226 * 11 10 9 21 21 O 1.22013 * 119.93842 * 180.27177 * 20 11 10 22 22 C 1.38652 * 120.54290 * 179.97438 * 8 6 5 23 23 H 1.09004 * 109.47110 * 299.99632 * 1 2 3 24 24 H 1.08993 * 109.47471 * 60.00070 * 1 2 3 25 25 H 1.09005 * 109.47242 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47356 * 60.00013 * 3 2 1 27 27 H 1.09002 * 109.47185 * 300.00044 * 3 2 1 28 28 H 1.09000 * 109.47201 * 305.00178 * 4 3 2 29 29 H 1.09004 * 109.47833 * 184.99932 * 4 3 2 30 30 H 0.97001 * 120.00313 * 0.02562 * 5 4 3 31 31 H 1.08003 * 120.09054 * 0.04227 * 9 8 6 32 32 H 1.07995 * 119.52320 * 180.25099 * 10 9 8 33 33 H 0.97008 * 120.00475 * 354.42872 * 15 14 12 34 34 H 1.07996 * 120.47515 * 359.97438 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 5.2894 0.3551 -1.4733 7 8 6.1070 0.6813 -0.6355 8 6 5.7355 -0.2732 -2.7386 9 6 4.7942 -0.6586 -3.7203 10 6 5.2177 -1.2261 -4.8712 11 7 6.5422 -1.4438 -5.0988 12 6 6.9349 -2.0238 -6.2703 13 1 7.9138 -1.8138 -6.6752 14 6 6.0717 -2.8880 -6.9445 15 7 5.1578 -3.5506 -6.2803 16 14 6.2195 -3.1000 -8.7945 17 1 5.1942 -4.0654 -9.2656 18 1 6.0087 -1.7900 -9.4613 19 1 7.5728 -3.6127 -9.1275 20 6 7.4714 -1.0921 -4.1909 21 8 8.6529 -1.2930 -4.4197 22 6 7.0831 -0.4928 -2.9794 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9785 2.1766 0.0902 30 1 3.3240 0.3032 -1.9194 31 1 3.7397 -0.4958 -3.5529 32 1 4.4947 -1.5149 -5.6196 33 1 5.1324 -3.5035 -5.3117 34 1 7.8240 -0.2079 -2.2471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586557220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:58 Heat of formation + Delta-G solvation = -86.377999 kcal Electronic energy + Delta-G solvation = -19696.117006 eV Core-core repulsion = 16401.720168 eV Total energy + Delta-G solvation = -3294.396838 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43728 -39.23932 -38.03724 -35.80880 -34.57875 -34.45192 -31.86855 -29.90061 -28.81269 -26.73242 -25.95921 -23.80958 -22.33056 -22.24962 -20.25689 -19.08595 -17.35278 -16.94738 -16.71619 -16.05726 -15.86208 -15.15363 -14.99857 -14.89275 -14.54078 -14.47602 -14.10448 -13.45459 -13.11138 -12.96800 -12.58213 -12.36446 -12.01526 -11.95445 -11.45073 -11.34865 -11.02033 -10.79637 -10.64135 -10.49776 -10.02920 -9.80747 -9.64554 -9.06317 -8.88272 -8.66390 -7.64152 -7.02138 -4.68273 1.41008 2.54794 3.02054 3.04379 3.25598 3.34647 3.50330 3.57280 3.73067 4.15340 4.40758 4.68523 4.87744 4.98149 5.01962 5.09048 5.11656 5.24954 5.40487 5.53461 5.69289 5.79505 5.83041 6.07019 6.41971 6.56368 6.84417 6.87416 6.99751 7.14012 7.24221 7.48364 7.76659 7.92079 8.22260 8.55286 8.62304 9.42290 9.74943 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.004799 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.300773 B = 5833.262358 C = 6897.414758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.048 3.952 4 C 0.123 3.877 5 N -0.725 5.725 6 C 0.566 3.434 7 O -0.546 6.546 8 C -0.082 4.082 9 C -0.232 4.232 10 C 0.071 3.929 11 N -0.284 5.284 12 C -0.402 4.402 13 H 0.121 0.879 14 C 0.025 3.975 15 N -0.810 5.810 16 Si 1.085 2.915 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.272 1.272 20 C 0.452 3.548 21 O -0.586 6.586 22 C -0.214 4.214 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.404 0.596 31 H 0.124 0.876 32 H 0.154 0.846 33 H 0.291 0.709 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 6.628 5.439 15.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.029 4.029 4 C -0.001 4.001 5 N -0.379 5.379 6 C 0.355 3.645 7 O -0.424 6.424 8 C -0.091 4.091 9 C -0.255 4.255 10 C -0.066 4.066 11 N 0.027 4.973 12 C -0.532 4.532 13 H 0.139 0.861 14 C -0.191 4.191 15 N -0.437 5.437 16 Si 0.906 3.094 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.197 1.197 20 C 0.262 3.738 21 O -0.476 6.476 22 C -0.240 4.240 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.240 0.760 31 H 0.142 0.858 32 H 0.171 0.829 33 H 0.104 0.896 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.550 5.792 4.643 14.581 hybrid contribution -0.114 0.795 1.274 1.506 sum -12.664 6.587 5.916 15.453 Atomic orbital electron populations 1.22763 0.80873 1.03019 0.99913 1.87973 1.19812 1.27374 1.95402 1.22831 0.93322 0.85457 1.01259 1.21328 0.91559 0.99214 0.88027 1.45810 1.07862 1.63842 1.20380 1.18544 0.81648 0.77650 0.86638 1.90702 1.53134 1.51865 1.46699 1.19826 0.94276 1.01387 0.93601 1.20037 0.98316 1.11761 0.95414 1.21703 0.86434 0.99869 0.98578 1.41741 1.05685 1.35666 1.14166 1.21355 1.07150 1.27319 0.97381 0.86112 1.27266 0.91639 0.90989 1.09187 1.70603 1.30490 1.30775 1.11861 0.83300 0.77840 0.77869 0.70403 1.19455 1.19707 1.19670 1.17016 0.86372 0.85760 0.84644 1.90783 1.16168 1.61460 1.79156 1.22097 0.95161 1.07519 0.99209 0.94137 0.93920 0.89457 0.91692 0.92413 0.90682 0.90011 0.75952 0.85823 0.82866 0.89573 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.17 10.65 -35.23 -0.38 -4.54 16 3 C 0.05 0.43 6.07 37.16 0.23 0.65 16 4 C 0.12 1.45 6.06 -4.04 -0.02 1.42 16 5 N -0.72 -10.53 5.46 -61.15 -0.33 -10.86 16 6 C 0.57 10.81 7.79 -12.19 -0.10 10.72 16 7 O -0.55 -11.95 16.39 5.35 0.09 -11.86 16 8 C -0.08 -1.73 5.91 -104.49 -0.62 -2.35 16 9 C -0.23 -4.48 9.51 -39.50 -0.38 -4.85 16 10 C 0.07 1.56 8.27 -16.75 -0.14 1.42 16 11 N -0.28 -7.27 2.61 -64.74 -0.17 -7.44 16 12 C -0.40 -10.46 8.96 -15.00 -0.13 -10.60 16 13 H 0.12 3.27 7.56 -52.48 -0.40 2.88 16 14 C 0.03 0.60 4.74 -17.44 -0.08 0.52 16 15 N -0.81 -19.73 12.33 55.52 0.68 -19.04 16 16 Si 1.08 20.11 30.00 -169.99 -5.10 15.01 16 17 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 18 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 C 0.45 12.29 7.36 -15.44 -0.11 12.18 16 21 O -0.59 -17.80 16.77 4.91 0.08 -17.72 16 22 C -0.21 -5.19 9.60 -38.53 -0.37 -5.56 16 23 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.40 5.18 6.57 -40.82 -0.27 4.91 16 31 H 0.12 1.88 6.50 -52.48 -0.34 1.54 16 32 H 0.15 3.24 6.38 -52.49 -0.33 2.90 16 33 H 0.29 7.28 6.98 -40.82 -0.28 7.00 16 34 H 0.14 3.34 7.69 -52.49 -0.40 2.94 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -32.39 299.49 -5.01 -37.39 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -3.78 Total: 9.65 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.61 Total: 4.89 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.18 Total: -37.34 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.21 Total: -34.12 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.10 Total: 15.01 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.39 -5.01 -37.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586557220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.984 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds