Wall clock time and date at job start Mon Mar 30 2020 04:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42894 * 114.00001 * 2 1 4 4 C 1.53002 * 109.47468 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46986 * 64.99631 * 4 3 2 6 6 C 1.34782 * 120.00175 * 180.02562 * 5 4 3 7 7 O 1.21519 * 119.99480 * 0.02562 * 6 5 4 8 8 C 1.48143 * 119.99829 * 179.97438 * 6 5 4 9 9 C 1.41359 * 120.54981 * 359.97438 * 8 6 5 10 10 C 1.35126 * 119.82141 * 179.76550 * 9 8 6 11 11 N 1.36138 * 120.96111 * 0.51175 * 10 9 8 12 12 C 1.36492 * 119.42920 * 179.75575 * 11 10 9 13 13 H 1.08006 * 119.99654 * 152.28132 * 12 11 10 14 14 C 1.39512 * 120.00079 * 332.27803 * 12 11 10 15 15 N 1.30974 * 119.99898 * 333.47048 * 14 12 11 16 16 Si 1.86794 * 119.99761 * 153.46892 * 14 12 11 17 17 H 1.48500 * 109.47077 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47299 * 300.00158 * 16 14 12 19 19 H 1.48499 * 109.47586 * 60.00019 * 16 14 12 20 20 C 1.34589 * 121.14116 * 359.48226 * 11 10 9 21 21 O 1.22013 * 119.93842 * 180.27177 * 20 11 10 22 22 C 1.38652 * 120.54290 * 179.97438 * 8 6 5 23 23 H 1.09004 * 109.47110 * 299.99632 * 1 2 3 24 24 H 1.08993 * 109.47471 * 60.00070 * 1 2 3 25 25 H 1.09005 * 109.47242 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47356 * 60.00013 * 3 2 1 27 27 H 1.09002 * 109.47185 * 300.00044 * 3 2 1 28 28 H 1.09000 * 109.47201 * 305.00178 * 4 3 2 29 29 H 1.09004 * 109.47833 * 184.99932 * 4 3 2 30 30 H 0.97001 * 120.00313 * 0.02562 * 5 4 3 31 31 H 1.08003 * 120.09054 * 0.04227 * 9 8 6 32 32 H 1.07995 * 119.52320 * 180.25099 * 10 9 8 33 33 H 0.97008 * 120.00475 * 354.42872 * 15 14 12 34 34 H 1.07996 * 120.47515 * 359.97438 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 5.2894 0.3551 -1.4733 7 8 6.1070 0.6813 -0.6355 8 6 5.7355 -0.2732 -2.7386 9 6 4.7942 -0.6586 -3.7203 10 6 5.2177 -1.2261 -4.8712 11 7 6.5422 -1.4438 -5.0988 12 6 6.9349 -2.0238 -6.2703 13 1 7.9138 -1.8138 -6.6752 14 6 6.0717 -2.8880 -6.9445 15 7 5.1578 -3.5506 -6.2803 16 14 6.2195 -3.1000 -8.7945 17 1 5.1942 -4.0654 -9.2656 18 1 6.0087 -1.7900 -9.4613 19 1 7.5728 -3.6127 -9.1275 20 6 7.4714 -1.0921 -4.1909 21 8 8.6529 -1.2930 -4.4197 22 6 7.0831 -0.4928 -2.9794 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8463 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9785 2.1766 0.0902 30 1 3.3240 0.3032 -1.9194 31 1 3.7397 -0.4958 -3.5529 32 1 4.4947 -1.5149 -5.6196 33 1 5.1324 -3.5035 -5.3117 34 1 7.8240 -0.2079 -2.2471 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586557220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:58 Heat of formation + Delta-G solvation = -110.643325 kcal Electronic energy + Delta-G solvation = -19697.169229 eV Core-core repulsion = 16401.720168 eV Total energy + Delta-G solvation = -3295.449061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.32385 -40.71728 -38.85325 -37.84695 -36.28375 -35.81691 -33.70910 -30.96477 -30.68221 -28.03535 -27.07304 -25.39088 -24.16721 -23.34484 -21.82268 -20.92913 -18.92103 -18.42117 -17.69724 -17.59421 -17.19875 -16.75428 -16.58344 -16.17112 -15.98156 -15.76144 -15.55132 -15.04232 -14.78374 -14.50865 -13.97517 -13.86186 -13.11693 -13.07022 -12.86862 -12.64046 -12.60107 -12.34071 -12.11610 -11.89922 -11.54693 -11.36592 -10.85772 -10.71588 -10.58855 -10.17349 -9.55720 -8.92914 -6.69080 -0.40418 0.76342 1.47030 1.52751 1.84371 1.88878 2.06310 2.13023 2.39921 2.57544 2.83469 3.06469 3.66457 3.90089 3.97913 4.11454 4.20693 4.25722 4.45135 4.57147 4.58938 4.62157 4.64614 4.85841 4.94411 5.06868 5.17403 5.26914 5.32099 5.36987 5.54370 6.02514 6.23327 6.26415 6.45318 6.69532 7.10692 7.42229 7.82789 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.004799 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.300773 B = 5833.262358 C = 6897.414758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.054 3.946 4 C 0.116 3.884 5 N -0.701 5.701 6 C 0.566 3.434 7 O -0.577 6.577 8 C -0.070 4.070 9 C -0.198 4.198 10 C 0.067 3.933 11 N -0.293 5.293 12 C -0.445 4.445 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.816 5.816 16 Si 1.134 2.866 17 H -0.259 1.259 18 H -0.254 1.254 19 H -0.270 1.270 20 C 0.424 3.576 21 O -0.644 6.644 22 C -0.233 4.233 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.416 0.584 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.280 0.720 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.043 7.473 5.415 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.023 4.023 4 C -0.007 4.007 5 N -0.354 5.354 6 C 0.354 3.646 7 O -0.458 6.458 8 C -0.079 4.079 9 C -0.220 4.220 10 C -0.068 4.068 11 N 0.019 4.981 12 C -0.573 4.573 13 H 0.112 0.888 14 C -0.204 4.204 15 N -0.442 5.442 16 Si 0.948 3.052 17 H -0.182 1.182 18 H -0.178 1.178 19 H -0.196 1.196 20 C 0.236 3.764 21 O -0.539 6.539 22 C -0.258 4.258 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.254 0.746 31 H 0.197 0.803 32 H 0.185 0.815 33 H 0.092 0.908 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.394 6.657 4.647 18.294 hybrid contribution 0.873 0.602 1.470 1.812 sum -15.521 7.259 6.116 18.193 Atomic orbital electron populations 1.22915 0.79248 1.03630 1.01202 1.87920 1.21651 1.28439 1.95708 1.22850 0.90712 0.85281 1.03415 1.21593 0.94095 0.99088 0.85899 1.45703 1.06092 1.62084 1.21536 1.18220 0.83075 0.77820 0.85476 1.90702 1.54418 1.53318 1.47331 1.20127 0.93201 0.99650 0.94893 1.20640 1.00578 1.07729 0.93042 1.22192 0.85153 0.99580 0.99873 1.41795 1.06752 1.35790 1.13809 1.21392 1.07428 1.30074 0.98434 0.88805 1.28667 0.90110 0.89157 1.12466 1.70718 1.31173 1.31128 1.11173 0.82751 0.78066 0.78908 0.65466 1.18246 1.17768 1.19551 1.17451 0.86239 0.86981 0.85743 1.90712 1.18201 1.64564 1.80434 1.21981 0.96866 1.08765 0.98202 0.92763 0.92696 0.89325 0.89183 0.90535 0.91931 0.88981 0.74597 0.80330 0.81538 0.90841 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.47 10.65 -148.98 -1.59 -9.05 16 3 C 0.05 0.73 6.07 71.98 0.44 1.16 16 4 C 0.12 2.37 6.06 86.38 0.52 2.89 16 5 N -0.70 -17.91 5.46 -465.67 -2.54 -20.46 16 6 C 0.57 20.54 7.79 86.87 0.68 21.22 16 7 O -0.58 -24.84 16.39 -3.77 -0.06 -24.91 16 8 C -0.07 -2.83 5.91 -19.78 -0.12 -2.95 16 9 C -0.20 -7.03 9.51 22.32 0.21 -6.82 16 10 C 0.07 2.86 8.27 83.31 0.69 3.55 16 11 N -0.29 -15.38 2.61 -476.94 -1.25 -16.63 16 12 C -0.44 -23.94 8.96 84.28 0.76 -23.19 16 13 H 0.09 5.44 7.56 -2.91 -0.02 5.41 16 14 C 0.01 0.40 4.74 85.13 0.40 0.80 16 15 N -0.82 -39.13 12.33 21.75 0.27 -38.86 16 16 Si 1.13 39.67 30.00 68.60 2.06 41.73 16 17 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 18 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 19 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 20 C 0.42 24.17 7.36 84.85 0.62 24.79 16 21 O -0.64 -41.95 16.77 -5.36 -0.09 -42.04 16 22 C -0.23 -11.65 9.60 22.95 0.22 -11.43 16 23 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 24 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.42 8.62 6.57 -92.71 -0.61 8.01 16 31 H 0.18 4.37 6.50 -2.91 -0.02 4.35 16 32 H 0.17 6.68 6.38 -2.91 -0.02 6.66 16 33 H 0.28 13.90 6.98 -92.70 -0.65 13.25 16 34 H 0.13 6.53 7.69 -2.91 -0.02 6.51 16 Total: -1.00 -74.92 299.49 3.12 -71.80 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.65 Total: 26.85 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.67 Total: 11.57 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -3.52 Total: -75.95 kcal Atomic # 8 Polarization: -74.26 SS G_CDS: -1.74 Total: -76.00 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.06 Total: 41.73 kcal Total: -74.92 3.12 -71.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586557220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.839 kcal (2) G-P(sol) polarization free energy of solvation -74.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds