Wall clock time and date at job start Mon Mar 30 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46753 * 179.97438 * 12 11 9 14 14 O 1.21289 * 120.00176 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99348 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99358 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00117 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99591 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99926 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47193 * 90.00051 * 20 18 16 22 22 H 1.48501 * 109.47335 * 210.00036 * 20 18 16 23 23 H 1.48498 * 109.47241 * 329.99854 * 20 18 16 24 24 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 25 25 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 27 27 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 28 28 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 29 29 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 30 30 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 31 31 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 32 32 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 33 33 H 0.96996 * 120.00832 * 359.97438 * 15 13 12 34 34 H 0.97001 * 119.99985 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7187 3.3558 5.8485 14 8 3.0915 4.4088 5.3759 15 7 2.6639 3.1992 7.1861 16 6 3.0293 4.2304 8.0124 17 1 3.3612 5.1680 7.5916 18 6 2.9724 4.0692 9.3914 19 7 2.5679 2.9285 9.9034 20 14 3.4707 5.4739 10.5173 21 1 2.2833 6.3141 10.8160 22 1 4.0185 4.9234 11.7830 23 1 4.5067 6.3010 9.8481 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.0394 4.2709 1.3157 30 1 2.7806 3.5330 3.3354 31 1 1.2776 1.9544 5.1312 32 1 2.9554 1.3601 5.1312 33 1 2.3655 2.3573 7.5641 34 1 2.5286 2.8158 10.8660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077248.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:45 Heat of formation + Delta-G solvation = -13.957850 kcal Electronic energy + Delta-G solvation = -19317.347407 eV Core-core repulsion = 16058.383694 eV Total energy + Delta-G solvation = -3258.963713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50842 -39.13471 -37.96067 -34.65124 -34.16622 -33.55240 -31.41860 -30.63806 -30.38631 -27.45966 -24.64288 -24.06884 -22.87323 -20.28760 -19.77487 -19.40311 -18.54738 -17.94729 -16.60315 -15.47040 -15.43322 -15.32967 -14.84501 -14.64377 -14.45086 -14.06450 -13.97843 -13.55748 -13.39040 -12.99569 -12.38020 -12.17332 -11.91535 -11.64601 -11.53132 -11.24007 -11.13613 -10.82378 -10.47223 -10.33080 -9.70285 -9.64815 -9.61562 -8.99324 -8.65143 -8.64442 -8.11238 -6.52553 -3.94661 1.42487 2.10644 2.55495 3.10635 3.21056 3.25651 3.49066 3.59076 3.74666 4.10832 4.38097 4.56406 4.88056 5.01254 5.16256 5.22847 5.33669 5.39786 5.50869 5.60709 5.93750 5.95951 5.98859 6.07141 6.13062 6.23213 6.40695 6.72302 6.94230 7.40470 7.44783 7.89298 7.91116 8.43509 8.54459 9.03395 9.38426 9.86077 10.64305 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.003548 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.435833 B = 7890.770492 C = 8488.572811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.138 3.862 4 N -0.303 5.303 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.107 3.893 8 C -0.282 4.282 9 C 0.590 3.410 10 O -0.547 6.547 11 N -0.707 5.707 12 C 0.111 3.889 13 C 0.428 3.572 14 O -0.600 6.600 15 N -0.549 5.549 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.189 0.811 30 H 0.407 0.593 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 -1.831 -16.437 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.030 4.030 4 N -0.126 5.126 5 N -0.168 5.168 6 H 0.288 0.712 7 C -0.046 4.046 8 C -0.297 4.297 9 C 0.377 3.623 10 O -0.426 6.426 11 N -0.360 5.360 12 C -0.016 4.016 13 C 0.214 3.786 14 O -0.487 6.487 15 N -0.183 5.183 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.206 0.794 30 H 0.244 0.756 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.230 0.770 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.185 -1.955 -17.578 17.726 hybrid contribution 0.420 1.196 1.442 1.920 sum -0.765 -0.760 -16.136 16.172 Atomic orbital electron populations 1.21616 0.93997 1.02042 1.02000 1.20128 0.96526 0.88034 1.04122 1.22473 0.94884 0.96981 0.88643 1.77128 1.22312 0.90602 1.22509 1.46082 1.52084 1.13144 1.05483 0.71247 1.23297 0.96646 0.99039 0.85585 1.20316 1.19161 0.95546 0.94646 1.17177 0.77188 0.84528 0.83391 1.90724 1.47503 1.20133 1.84269 1.45532 1.67615 1.17714 1.05161 1.20930 1.02557 0.97207 0.80947 1.19767 0.85985 0.89241 0.83606 1.90476 1.53977 1.29076 1.75152 1.41800 1.56692 1.15941 1.03896 1.19725 1.41645 0.95091 0.87052 0.87695 1.25323 0.96929 0.97904 0.97529 1.69613 1.46119 1.24113 1.13568 0.85818 0.78949 0.80291 0.78996 1.20272 1.20795 1.19333 0.93107 0.91915 0.92026 0.90754 0.87904 0.79385 0.75593 0.89765 0.89767 0.76992 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 37.16 0.37 -1.16 16 2 C -0.05 -0.59 5.97 -27.89 -0.17 -0.75 16 3 C 0.14 1.85 6.52 -82.02 -0.53 1.32 16 4 N -0.30 -3.81 12.63 33.89 0.43 -3.38 16 5 N -0.46 -4.37 7.29 30.85 0.22 -4.14 16 6 H 0.44 2.47 8.96 -182.72 -1.64 0.83 16 7 C 0.11 1.10 11.52 -16.56 -0.19 0.91 16 8 C -0.28 -3.84 6.13 -105.07 -0.64 -4.48 16 9 C 0.59 9.50 7.81 -12.52 -0.10 9.40 16 10 O -0.55 -10.01 14.92 5.28 0.08 -9.93 16 11 N -0.71 -11.52 5.52 -62.57 -0.35 -11.86 16 12 C 0.11 2.01 6.15 -5.19 -0.03 1.97 16 13 C 0.43 9.59 7.85 -10.98 -0.09 9.50 16 14 O -0.60 -14.87 15.24 5.55 0.08 -14.78 16 15 N -0.55 -13.38 5.29 -10.96 -0.06 -13.43 16 16 C -0.31 -8.19 9.68 -14.93 -0.14 -8.33 16 17 H 0.11 2.92 7.16 -52.49 -0.38 2.54 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.63 13.05 55.50 0.72 -22.91 16 20 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.36 6.55 -51.92 -0.34 1.02 16 29 H 0.19 1.38 7.46 -52.49 -0.39 0.99 16 30 H 0.41 6.29 6.36 -40.82 -0.26 6.03 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.40 9.30 7.90 -40.82 -0.32 8.98 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -32.38 303.39 -5.94 -38.32 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.00 Total: 13.34 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -1.62 Total: 8.95 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.97 Total: -55.73 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.16 Total: -24.71 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.38 -5.94 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077248.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.358 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds