Wall clock time and date at job start Mon Mar 30 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47152 * 2 1 4 4 N 1.30446 * 125.99006 * 270.01720 * 3 2 1 5 5 N 1.39935 * 108.90003 * 179.72464 * 4 3 2 6 6 H 0.96998 * 125.75472 * 180.27595 * 5 4 3 7 7 C 1.34258 * 108.49136 * 0.43452 * 5 4 3 8 8 C 1.38054 * 107.41520 * 359.57809 * 7 5 4 9 9 C 1.47421 * 126.41174 * 180.26178 * 8 7 5 10 10 O 1.21602 * 119.99937 * 179.97438 * 9 8 7 11 11 N 1.34779 * 120.00515 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00176 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46753 * 179.97438 * 12 11 9 14 14 O 1.21289 * 120.00176 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99348 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99358 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00117 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99591 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00035 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99926 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47193 * 90.00051 * 20 18 16 22 22 H 1.48501 * 109.47335 * 210.00036 * 20 18 16 23 23 H 1.48498 * 109.47241 * 329.99854 * 20 18 16 24 24 H 1.09003 * 109.46561 * 60.00454 * 1 2 3 25 25 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47436 * 300.00556 * 1 2 3 27 27 H 1.08998 * 109.47436 * 239.99444 * 2 1 3 28 28 H 1.09007 * 109.47001 * 119.99709 * 2 1 3 29 29 H 1.08002 * 126.29527 * 179.84921 * 7 5 4 30 30 H 0.97000 * 119.99526 * 359.97438 * 11 9 8 31 31 H 1.08991 * 109.46974 * 300.00073 * 12 11 9 32 32 H 1.09000 * 109.47030 * 60.00136 * 12 11 9 33 33 H 0.96996 * 120.00832 * 359.97438 * 15 13 12 34 34 H 0.97001 * 119.99985 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2875 2.1436 -1.0555 5 7 2.7275 3.4067 -0.6442 6 1 2.9802 4.1374 -1.2301 7 6 2.7443 3.4357 0.6979 8 6 2.3090 2.2035 1.1433 9 6 2.1609 1.7833 2.5485 10 8 1.7649 0.6636 2.8098 11 7 2.4644 2.6400 3.5438 12 6 2.3166 2.2225 4.9402 13 6 2.7187 3.3558 5.8485 14 8 3.0915 4.4088 5.3759 15 7 2.6639 3.1992 7.1861 16 6 3.0293 4.2304 8.0124 17 1 3.3612 5.1680 7.5916 18 6 2.9724 4.0692 9.3914 19 7 2.5679 2.9285 9.9034 20 14 3.4707 5.4739 10.5173 21 1 2.2833 6.3141 10.8160 22 1 4.0185 4.9234 11.7830 23 1 4.5067 6.3010 9.8481 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.0394 4.2709 1.3157 30 1 2.7806 3.5330 3.3354 31 1 1.2776 1.9544 5.1312 32 1 2.9554 1.3601 5.1312 33 1 2.3655 2.3573 7.5641 34 1 2.5286 2.8158 10.8660 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588077248.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:45 Heat of formation + Delta-G solvation = -39.141019 kcal Electronic energy + Delta-G solvation = -19318.439431 eV Core-core repulsion = 16058.383694 eV Total energy + Delta-G solvation = -3260.055738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.44773 -40.63397 -39.56961 -36.23341 -35.49895 -34.87776 -33.35274 -31.72704 -31.28384 -28.97731 -26.44833 -24.98141 -23.98668 -21.51853 -21.24793 -20.57072 -20.05573 -19.42514 -17.92440 -17.06762 -16.77329 -16.73151 -16.22738 -16.03173 -15.67617 -15.53631 -15.08729 -14.95330 -14.78197 -14.05416 -13.77402 -13.52051 -13.50028 -13.26214 -12.88495 -12.43233 -12.42335 -12.16063 -12.11182 -11.79101 -11.54204 -10.90582 -10.55361 -10.51940 -10.20884 -10.06485 -9.76739 -8.48648 -5.98617 0.51280 1.07998 1.38401 1.44637 1.56955 1.76972 1.93711 2.14315 2.36402 2.44149 3.17806 3.19039 3.44555 3.74545 4.11718 4.18661 4.30061 4.42473 4.49203 4.50041 4.50423 4.62301 4.71722 5.07465 5.18554 5.31387 5.35018 5.41148 5.47753 5.94731 6.24281 6.45984 6.51100 6.67784 7.06067 7.27886 7.48131 7.97352 8.68289 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.040023 B = 0.003548 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.435833 B = 7890.770492 C = 8488.572811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C 0.128 3.872 4 N -0.319 5.319 5 N -0.445 5.445 6 H 0.461 0.539 7 C 0.133 3.867 8 C -0.317 4.317 9 C 0.592 3.408 10 O -0.575 6.575 11 N -0.706 5.706 12 C 0.124 3.876 13 C 0.435 3.565 14 O -0.623 6.623 15 N -0.561 5.561 16 C -0.336 4.336 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.996 3.004 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.269 1.269 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.221 0.779 30 H 0.412 0.588 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -0.992 -17.209 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.089 4.089 3 C -0.040 4.040 4 N -0.142 5.142 5 N -0.151 5.151 6 H 0.310 0.690 7 C -0.021 4.021 8 C -0.332 4.332 9 C 0.381 3.619 10 O -0.456 6.456 11 N -0.359 5.359 12 C -0.004 4.004 13 C 0.222 3.778 14 O -0.511 6.511 15 N -0.196 5.196 16 C -0.466 4.466 17 H 0.106 0.894 18 C -0.211 4.211 19 N -0.557 5.557 20 Si 0.819 3.181 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.193 1.193 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.238 0.762 30 H 0.250 0.750 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.233 0.767 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.922 -1.110 -18.397 18.454 hybrid contribution 0.350 0.960 1.569 1.873 sum -0.571 -0.150 -16.828 16.838 Atomic orbital electron populations 1.21563 0.93412 1.02860 1.01172 1.20135 0.97015 0.87769 1.03988 1.22659 0.95024 0.97554 0.88770 1.77085 1.22926 0.91696 1.22459 1.46120 1.50503 1.12805 1.05635 0.69005 1.23680 0.94010 0.98515 0.85931 1.20223 1.22288 0.97406 0.93295 1.17479 0.76257 0.83949 0.84168 1.90706 1.48796 1.21275 1.84802 1.45479 1.68022 1.18067 1.04375 1.20745 1.03122 0.95431 0.81094 1.20423 0.84198 0.89805 0.83413 1.90452 1.54550 1.30478 1.75579 1.41854 1.57504 1.15707 1.04531 1.19746 1.43380 0.95333 0.88093 0.89439 1.26114 0.96429 1.00249 0.98357 1.69681 1.46440 1.25457 1.14127 0.84879 0.78644 0.77407 0.77134 1.19622 1.19832 1.19343 0.92502 0.90337 0.94097 0.89214 0.89599 0.76248 0.75017 0.88834 0.88827 0.76728 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.89 71.98 0.71 -2.12 16 2 C -0.05 -1.17 5.97 29.85 0.18 -0.99 16 3 C 0.13 3.29 6.52 43.51 0.28 3.57 16 4 N -0.32 -7.43 12.63 -46.68 -0.59 -8.02 16 5 N -0.44 -7.18 7.29 -56.31 -0.41 -7.59 16 6 H 0.46 3.68 8.96 -213.43 -1.91 1.77 16 7 C 0.13 2.40 11.52 84.28 0.97 3.37 16 8 C -0.32 -8.26 6.13 -20.15 -0.12 -8.38 16 9 C 0.59 18.70 7.81 86.66 0.68 19.38 16 10 O -0.57 -21.06 14.92 -4.04 -0.06 -21.12 16 11 N -0.71 -22.31 5.52 -470.12 -2.59 -24.90 16 12 C 0.12 4.39 6.15 85.63 0.53 4.92 16 13 C 0.43 19.40 7.85 87.66 0.69 20.09 16 14 O -0.62 -30.71 15.24 -3.06 -0.05 -30.75 16 15 N -0.56 -27.55 5.29 -306.98 -1.62 -29.18 16 16 C -0.34 -18.17 9.68 84.04 0.81 -17.36 16 17 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 18 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 19 N -0.92 -48.26 13.05 21.66 0.28 -47.97 16 20 Si 1.00 41.11 29.55 68.60 2.03 43.14 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 2.31 6.55 -2.38 -0.02 2.29 16 29 H 0.22 2.45 7.46 -2.91 -0.02 2.42 16 30 H 0.41 12.15 6.36 -92.71 -0.59 11.56 16 31 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 34 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -68.98 303.39 0.12 -68.86 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -2.06 Total: 35.17 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 5.19 Total: 22.38 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -4.93 Total: -117.67 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.11 Total: -51.88 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -68.98 0.12 -68.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077248.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.721 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds